LOC110497973 (LOC106583826)


Basic Information

Item Value
gene id LOC110497973
gene name LOC106583826
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45291705 ~ 45296375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574470.2
TTTGATATAAGCCTAATATTGTAGCACTCAACAGAATCATCACAAGTACCTTTATTTATACTGTATATCCTGATCTCTCAAAAAAGGGAAATGAAAGAAAAAACAGGAACCGTGTATTTTCCGGTGGACAGTAGATGTCATACCTAGTTTCATATCAATTTCTGAGGACATAGAGGAAGGCTATTGTAACGACAAATCACTTGCAGAAGACGAGCCGCTTTACTCTGTTTCCCAGTACATCAGGAACATCCATGCCAGAGATGTCCTCTCCTTACAATACTTTACATGATAGCGATGTTCCCAACTTATATTGATCACATGGCTGTGTTCATGTTCCAGGGATCCAAACGGCTTGTTTCAATTGCTGTGGCAGTGGGATGTTTGACTGCATTCGGGGCACTGCTCTCCTTTTCTATGTATGAGAAGAGCACAGAAGAGCATTTCCAAAACTACAAGATCTTCCAAAAAACAAACACTGATCAAAATAACATTTCTGAAGAGCAAAGCCGTATAATCCTCGTAGAGAGCATTCCCCTGTATATGAAATATGACGACAATGCAACCTTTGGGACCCCAGTGGACAAAGCCTGGAGAGATCTCCTGTCCATGGCAACCTACCAAGTCGATGTGGCTTCCTTCTACTGGACTCTTACCGGTGATGACATCAATATCAACTCTTCCACTGACTTGCCTGGAAAGAACATACTGGAGCAGTTTGGAGCTTTACCTTCCAGAAATGTGTCAGTGAGAGTTGTGACAAGTATTCCCTCTGTGCTGACAAACTCCACAGATCTTCATTTTCTGAGACAGAAAGGAGTCCAAGTAAGAAAAGTTCCCTTTGGGCGTTTGACTGGGGGTGTACTCCACAGCAAGTTCTGGATTGTTGATAGGAAACACATTTTCCTGGGAAGTGCCAACATGGATTGGAGGTCTCTTACACAGGTAAAGGAACTGGGAGTGGTGATCTATAACTGCTCCAGTCTGGCTGAGGACCTCCATAAGATCTTTGAGTCATACTGGGTGATGGGTCATCGCAACAGCACCATCCCAAACCCTTGGCCCTCCAAGTATGACACTGCCATCAACAAAGAGCACCCCATGCTGCTGAAGACTGATAATGTTTCAAGCAAAATCTACATCACAGCCTCTCCTCCCACTTTCTGCCCCACCTCTCGGACGCAGGACCTTGATTCTATCCTCTCAGTGATCTCAGGGGCACAGCACTACATTGATGTAGCAGTCATGGAGTATTTCCCCACCACACGCTTCATACACCCTCAAAGGTACTGGCCAGCCATTGATGATGCATTAAAGAGGGCTGCTTTTGAGCGGAATGTTAAGGTCCGTCTGCTGGTGAGCTGTGGGCGGGATTCTGATCCAGCCATGCTTCCTTTTCTTCAGTCTCTAGCCTCCCTGAATTACCCTGCCCAGCGTATCAGCATTCAAGTGAAACTGTCCATTGTGCCAGTGGGGAACCAGTCAGAGATACCCCACTCTAGAGTAAACCATAATAAATACATGGTGACTGATAAAATGGCATATATTGGGACATCTAACTGGTCAGCTGACTACTTCAACACCACAGCTGGAGTGGGGCTGGTGGTTTCCCAGCACGCACCACACTGGGCCTGGAGGACCCAGGCTCTGCAGGGGCAGCTCAGGGCAGTATTTGACAGGGACTGGCAGTCTCAGTTTACTGTATGTCTCGCTGACTTGGGTCATCACCCTGACTGTGCCCTCTCAAAAGGATAGGCGCTCTACTTACCATCCGTACACTCAGTTATAACAATGTTTACTTTATAAAAGTCCCCAAAGCATTCAGTTATGGCAGTTATGGCTTAGGGAGATAACAGTAAGCCTGTTGGactgcttttttgttgttgtctttggTTGTTTCTATGAGGAACGTTGCAACTGAACACACATAATTTGCTTCATTATTTGTTTGTATTAGTTACCTTTTTTCCAGAGTGAAAATGTCATGTTGAATGTTTAATATTTCACTGTCTATTAGGGTACGTTGGGGGAAATCGTACCTTAATACCTTTTGCAAGCAAATAAATACTATTTCATGATATATA
>XM_036954920.1
TTGATATAAGCCTAATATTGTAGCACTCAACAGAATCATCACAAGTACCTTTATTTATACTGTATATCCTGATCTCTCAAAAAAGGGAAATGAAAGAAAAAACAGGAACCGTGTATTTTCCGGTGGACAGTAGATGTCATACCTAGTTTCATATCAATTTCTGAGGACATAGAGGAAGGCTATTGTAACGACAAATCACTTGCAGAAGACGAGCCGCTTTACTCTGTTTCCCAGTACATCAGGAACATCCATGCCAGAGATGTCCTCTCCTTACAATACTTTACATGATAGCGATGTTCCCAACGTAAGGTTATATTGATCACATGGCTGTGTTCATGTTCCAGGGATCCAAACGGCTTGTTTCAATTGCTGTGGCAGTGGGATGTTTGACTGCATTCGGGGCACTGCTCTCCTTTTCTATGTATGAGAAGAGCACAGAAGAGCATTTCCAAAACTACAAGATCTTCCAAAAAACAAACACTGATCAAAATAACATTTCTGAAGAGCAAAGCCGTATAATCCTCGTAGAGAGCATTCCCCTGTATATGAAATATGACGACAATGCAACCTTTGGGACCCCAGTGGACAAAGCCTGGAGAGATCTCCTGTCCATGGCAACCTACCAAGTCGATGTGGCTTCCTTCTACTGGACTCTTACCGGTGATGACATCAATATCAACTCTTCCACTGACTTGCCTGGAAAGAACATACTGGAGCAGTTTGGAGCTTTACCTTCCAGAAATGTGTCAGTGAGAGTTGTGACAAGTATTCCCTCTGTGCTGACAAACTCCACAGATCTTCATTTTCTGAGACAGAAAGGAGTCCAAGTAAGAAAAGTTCCCTTTGGGCGTTTGACTGGGGGTGTACTCCACAGCAAGTTCTGGATTGTTGATAGGAAACACATTTTCCTGGGAAGTGCCAACATGGATTGGAGGTCTCTTACACAGGTAAAGGAACTGGGAGTGGTGATCTATAACTGCTCCAGTCTGGCTGAGGACCTCCATAAGATCTTTGAGTCATACTGGGTGATGGGTCATCGCAACAGCACCATCCCAAACCCTTGGCCCTCCAAGTATGACACTGCCATCAACAAAGAGCACCCCATGCTGCTGAAGACTGATAATGTTTCAAGCAAAATCTACATCACAGCCTCTCCTCCCACTTTCTGCCCCACCTCTCGGACGCAGGACCTTGATTCTATCCTCTCAGTGATCTCAGGGGCACAGCACTACATTGATGTAGCAGTCATGGAGTATTTCCCCACCACACGCTTCATACACCCTCAAAGGTACTGGCCAGCCATTGATGATGCATTAAAGAGGGCTGCTTTTGAGCGGAATGTTAAGGTCCGTCTGCTGGTGAGCTGTGGGCGGGATTCTGATCCAGCCATGCTTCCTTTTCTTCAGTCTCTAGCCTCCCTGAATTACCCTGCCCAGCGTATCAGCATTCAAGTGAAACTGTCCATTGTGCCAGTGGGGAACCAGTCAGAGATACCCCACTCTAGAGTAAACCATAATAAATACATGGTGACTGATAAAATGGCATATATTGGGACATCTAACTGGTCAGCTGACTACTTCAACACCACAGCTGGAGTGGGGCTGGTGGTTTCCCAGCACGCACCACACTGGGCCTGGAGGACCCAGGCTCTGCAGGGGCAGCTCAGGGCAGTATTTGACAGGGACTGGCAGTCTCAGTTTACTGTATGTCTCGCTGACTTGGGTCATCACCCTGACTGTGCCCTCTCAAAAGGATAGGCGCTCTACTTACCATCCGTACACTCAGTTATAACAATGTTTACTTTATAAAAGTCCCCAAAGCATTCAGTTATGGCAGTTATGGCTTAGGGAGATAACAGTAAGCCTGTTGGactgcttttttgttgttgtctttggTTGTTTCTATGAGGAACGTTGCAACTGAACACACATAATTTGCTTCATTATTTGTTTGTATTAGTTACCTTTTTTCCAGAGTGAAAATGTCATGTTGAATGTTTAATATTTCACTGTCTATTAGGGTACGTTGGGGGAAATCGTACCTTAATACCTTTTGCAAGCAAATAAATACTATTTCATGATATATA
>XM_021574467.2
TGATATAAGCCTAATATTGTAGCACTCAACAGAATCATCACAAGTACCTTTATTTATACTGTATATCCTGATCTCTCAAAAAAGGGAAATGAAAGAAAAAACAGGAACCGTGTATTTTCCGGTGGACAGTAGATGTCATACCTAGTTTCATATCAATTTCTGAGGACATAGAGGAAGGCTATTGTAACGACAAATCACTTGCAGAAGACGAGCCGCTTTACTCTGTTTCCCAGTACATCAGGAACATCCATGCCAGAGATGTCCTCTCCTTACAATACTTTACATGATAGCGATGTTCCCAACGTAAGGGGATCCAAACGGCTTGTTTCAATTGCTGTGGCAGTGGGATGTTTGACTGCATTCGGGGCACTGCTCTCCTTTTCTATGTATGAGAAGAGCACAGAAGAGCATTTCCAAAACTACAAGATCTTCCAAAAAACAAACACTGATCAAAATAACATTTCTGAAGAGCAAAGCCGTATAATCCTCGTAGAGAGCATTCCCCTGTATATGAAATATGACGACAATGCAACCTTTGGGACCCCAGTGGACAAAGCCTGGAGAGATCTCCTGTCCATGGCAACCTACCAAGTCGATGTGGCTTCCTTCTACTGGACTCTTACCGGTGATGACATCAATATCAACTCTTCCACTGACTTGCCTGGAAAGAACATACTGGAGCAGTTTGGAGCTTTACCTTCCAGAAATGTGTCAGTGAGAGTTGTGACAAGTATTCCCTCTGTGCTGACAAACTCCACAGATCTTCATTTTCTGAGACAGAAAGGAGTCCAAGTAAGAAAAGTTCCCTTTGGGCGTTTGACTGGGGGTGTACTCCACAGCAAGTTCTGGATTGTTGATAGGAAACACATTTTCCTGGGAAGTGCCAACATGGATTGGAGGTCTCTTACACAGGTAAAGGAACTGGGAGTGGTGATCTATAACTGCTCCAGTCTGGCTGAGGACCTCCATAAGATCTTTGAGTCATACTGGGTGATGGGTCATCGCAACAGCACCATCCCAAACCCTTGGCCCTCCAAGTATGACACTGCCATCAACAAAGAGCACCCCATGCTGCTGAAGACTGATAATGTTTCAAGCAAAATCTACATCACAGCCTCTCCTCCCACTTTCTGCCCCACCTCTCGGACGCAGGACCTTGATTCTATCCTCTCAGTGATCTCAGGGGCACAGCACTACATTGATGTAGCAGTCATGGAGTATTTCCCCACCACACGCTTCATACACCCTCAAAGGTACTGGCCAGCCATTGATGATGCATTAAAGAGGGCTGCTTTTGAGCGGAATGTTAAGGTCCGTCTGCTGGTGAGCTGTGGGCGGGATTCTGATCCAGCCATGCTTCCTTTTCTTCAGTCTCTAGCCTCCCTGAATTACCCTGCCCAGCGTATCAGCATTCAAGTGAAACTGTCCATTGTGCCAGTGGGGAACCAGTCAGAGATACCCCACTCTAGAGTAAACCATAATAAATACATGGTGACTGATAAAATGGCATATATTGGGACATCTAACTGGTCAGCTGACTACTTCAACACCACAGCTGGAGTGGGGCTGGTGGTTTCCCAGCACGCACCACACTGGGCCTGGAGGACCCAGGCTCTGCAGGGGCAGCTCAGGGCAGTATTTGACAGGGACTGGCAGTCTCAGTTTACTGTATGTCTCGCTGACTTGGGTCATCACCCTGACTGTGCCCTCTCAAAAGGATAGGCGCTCTACTTACCATCCGTACACTCAGTTATAACAATGTTTACTTTATAAAAGTCCCCAAAGCATTCAGTTATGGCAGTTATGGCTTAGGGAGATAACAGTAAGCCTGTTGGactgcttttttgttgttgtctttggTTGTTTCTATGAGGAACGTTGCAACTGAACACACATAATTTGCTTCATTATTTGTTTGTATTAGTTACCTTTTTTCCAGAGTGAAAATGTCATGTTGAATGTTTAATATTTCACTGTCTATTAGGGTACGTTGGGGGAAATCGTACCTTAATACCTTTTGCAAGCAAATAAATACTATTTCATGATATATA
>XM_021574468.2
TGATATAAGCCTAATATTGTAGCACTCAACAGAATCATCACAAGTACCTTTATTTATACTGTATATCCTGATCTCTCAAAAAAGGGAAATGAAAGAAAAAACAGGAACCGTGTATTTTCCGGTGGACAGTAGATGTCATACCTAGTTTCATATCAATTTCTGAGGACATAGAGGAAGGCTATTGTAACGACAAATCACTTGCAGAAGACGAGCCGCTTTACTCTGTTTCCTACATCAGGAACATCCATGCCAGAGATGTCCTCTCCTTACAATACTTTACATGATAGCGATGTTCCCAACGTAAGGGGATCCAAACGGCTTGTTTCAATTGCTGTGGCAGTGGGATGTTTGACTGCATTCGGGGCACTGCTCTCCTTTTCTATGTATGAGAAGAGCACAGAAGAGCATTTCCAAAACTACAAGATCTTCCAAAAAACAAACACTGATCAAAATAACATTTCTGAAGAGCAAAGCCGTATAATCCTCGTAGAGAGCATTCCCCTGTATATGAAATATGACGACAATGCAACCTTTGGGACCCCAGTGGACAAAGCCTGGAGAGATCTCCTGTCCATGGCAACCTACCAAGTCGATGTGGCTTCCTTCTACTGGACTCTTACCGGTGATGACATCAATATCAACTCTTCCACTGACTTGCCTGGAAAGAACATACTGGAGCAGTTTGGAGCTTTACCTTCCAGAAATGTGTCAGTGAGAGTTGTGACAAGTATTCCCTCTGTGCTGACAAACTCCACAGATCTTCATTTTCTGAGACAGAAAGGAGTCCAAGTAAGAAAAGTTCCCTTTGGGCGTTTGACTGGGGGTGTACTCCACAGCAAGTTCTGGATTGTTGATAGGAAACACATTTTCCTGGGAAGTGCCAACATGGATTGGAGGTCTCTTACACAGGTAAAGGAACTGGGAGTGGTGATCTATAACTGCTCCAGTCTGGCTGAGGACCTCCATAAGATCTTTGAGTCATACTGGGTGATGGGTCATCGCAACAGCACCATCCCAAACCCTTGGCCCTCCAAGTATGACACTGCCATCAACAAAGAGCACCCCATGCTGCTGAAGACTGATAATGTTTCAAGCAAAATCTACATCACAGCCTCTCCTCCCACTTTCTGCCCCACCTCTCGGACGCAGGACCTTGATTCTATCCTCTCAGTGATCTCAGGGGCACAGCACTACATTGATGTAGCAGTCATGGAGTATTTCCCCACCACACGCTTCATACACCCTCAAAGGTACTGGCCAGCCATTGATGATGCATTAAAGAGGGCTGCTTTTGAGCGGAATGTTAAGGTCCGTCTGCTGGTGAGCTGTGGGCGGGATTCTGATCCAGCCATGCTTCCTTTTCTTCAGTCTCTAGCCTCCCTGAATTACCCTGCCCAGCGTATCAGCATTCAAGTGAAACTGTCCATTGTGCCAGTGGGGAACCAGTCAGAGATACCCCACTCTAGAGTAAACCATAATAAATACATGGTGACTGATAAAATGGCATATATTGGGACATCTAACTGGTCAGCTGACTACTTCAACACCACAGCTGGAGTGGGGCTGGTGGTTTCCCAGCACGCACCACACTGGGCCTGGAGGACCCAGGCTCTGCAGGGGCAGCTCAGGGCAGTATTTGACAGGGACTGGCAGTCTCAGTTTACTGTATGTCTCGCTGACTTGGGTCATCACCCTGACTGTGCCCTCTCAAAAGGATAGGCGCTCTACTTACCATCCGTACACTCAGTTATAACAATGTTTACTTTATAAAAGTCCCCAAAGCATTCAGTTATGGCAGTTATGGCTTAGGGAGATAACAGTAAGCCTGTTGGactgcttttttgttgttgtctttggTTGTTTCTATGAGGAACGTTGCAACTGAACACACATAATTTGCTTCATTATTTGTTTGTATTAGTTACCTTTTTTCCAGAGTGAAAATGTCATGTTGAATGTTTAATATTTCACTGTCTATTAGGGTACGTTGGGGGAAATCGTACCTTAATACCTTTTGCAAGCAAATAAATACTATTTCATGATATATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K16860 PLD3_4; phospholipase D3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574470.2 False 2081 mRNA 0.45 11 45291705 45296375
XM_036954920.1 False 2086 mRNA 0.45 11 45291706 45296375
XM_021574467.2 False 2051 mRNA 0.45 11 45291707 45296375
XM_021574468.2 True 2048 mRNA 0.45 11 45291707 45296375

Neighbor

gene id symbol gene type direction distance location
LOC110497972 LOC106582486 coding upstream 47 45266098 ~ 45291658 (+)
LOC110497971 LOC106582637 coding upstream 38877 45217001 ~ 45252828 (+)
trnaa-ugc-144 NA coding upstream 48727 45242903 ~ 45242978 (+)
LOC110497969 siva1 coding upstream 93363 45174289 ~ 45198342 (+)
LOC110497967 adssl2 coding upstream 117620 45166900 ~ 45174085 (+)
LOC110497977 LOC106582390 coding downstream 2071 45298446 ~ 45301424 (+)
zgc:162989 pp14b coding downstream 108261 45404636 ~ 45421914 (+)
bub1bb LOC106582108 coding downstream 130700 45427075 ~ 45430207 (+)
LOC110497981 LOC106581963 coding downstream 148451 45444826 ~ 45470840 (+)
si:dkey-248g15.3 NA coding downstream 337259 45633634 ~ 45635163 (+)
G1629047 NA non-coding upstream 34589 45256900 ~ 45257116 (+)
G1629028 NA non-coding upstream 79585 45211893 ~ 45212120 (+)
G1628861 NA non-coding upstream 173050 45118452 ~ 45118655 (+)
G1629069 NA non-coding downstream 14501 45310876 ~ 45377620 (+)
G1629113 NA non-coding downstream 82668 45379043 ~ 45379377 (+)
G1629115 NA non-coding downstream 83986 45380361 ~ 45380579 (+)
G1629117 NA non-coding downstream 84935 45381310 ~ 45381540 (+)
G1629120 NA non-coding downstream 87149 45383524 ~ 45383819 (+)
G1628865 LOC105030512 other upstream 97464 45186962 ~ 45194241 (+)
LOC110497964 LOC106583112 other upstream 238154 45051160 ~ 45053552 (+)
G1628689 NA other upstream 404532 44886871 ~ 44887173 (+)
G1628550 NA other upstream 405471 44829922 ~ 44886234 (+)
G1628488 NA other upstream 544259 44688382 ~ 44747446 (+)
G1629134 spit1 other downstream 100456 45396831 ~ 45399822 (+)
G1629200 NA other downstream 205419 45501794 ~ 45502263 (+)
G1629210 NA other downstream 219799 45516174 ~ 45516648 (+)
G1629779 LOC106580335 other downstream 717349 46013724 ~ 46016639 (+)

Expression


Co-expression Network