LOC110497977 (LOC106582390)


Basic Information

Item Value
gene id LOC110497977
gene name LOC106582390
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45298446 ~ 45301424 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574475.2
ccgttaaacctcatcgaagaagAAGTGCTGTACTTTGCAAGTTGAAAGGGCACGGGGCGGCGTTTCATGTTGTACTAGCTACGTGTGCTTCTGACAGGCTAGCCAGCAAGCTGAATAATTGCAGTGAACATCATGGTACTACTTGAAAACGACTCGTTTTTGACGGAGTTGACACGGCTGTTCCAGAAATGCAGGACATCAGGCAGTGTTGCCATCACGTTAAAGAAATATGATGGGAGAACCAAACCAGTCCCCAGGAAAGGTCACCCAGTGAATTATGAACCAGCAGACAACAAGTGTCTACTCAGAGCGTCAGATGGCAAGAAGAAAATCAGCACAGTGGTTAGTAGCAAAGAAGTAATCAAGTTCCAGATGGCATACTCTAACCTCCTGAGAGCTCACATGGATGGGCTCAAGAAGAAAGACAAGAAAAGCAAAAGCAAGAAAACCAAAGCCACCCAATGAGCAACAGACTCTTTCATAGCAGACTGGGGAAATCCACACTGGCCTGTACCACCTCCAACTatcatctctacctccatcctaCCTGTTCCGATATGTTCCCTGAGGCCCACCATCCTCCACTTGGGGACAGCTTTGACATCATGCCATTGTTTACACAGCAATGTCTCATCCCTGGCCAGTGAATGGCATCGGTCTAtatagggaggaagggagagccgAGGATGTTTAACACTCAGAAGATACTACAAGCCTTttgatgcacccccccccccccccccccccccccacaaatctATGGTGTGGATCAAAGTTACACGGAGATGCATTCATTTATGGAGTCACTGAAAGGATGGAGCATGTTGATGAATTGCCTTTCAAATCGTTTTAATTTGAACTACTAGGCCCTGTCTATTTATGTTTGAATTATCACTCAGTTTGGTTTGCTTGTCAATTTGATTACATTTTCACTGAAGTTATGATTTACTTTCCAATTGGACCTTGTCTTAACCATTTGTGGATAGATTATTACTGTGTACTATGAGTGAAGATGCCATATACATTTGTTATGGTTGGGGCTGAATGCTTTTTCTTGCTATTCAAATTCATATTATTTTAATGATGGAAAGTGAGATCCTGAGTTTGTTCTTTGTTGGTATTTCTTAAGACAAAATTATTAAGTGGTTGAGTTCCTTATTGGTCCAATTAATTTTCTGTAAACTCAGTTGTAAGGCAAGCTGTAGAGGAAGGGTCCCAAAGTTAGCTGACACAAGGCCGCTTTGGTACTTAGAAATGTGCTGTTTCCTGTGTTTAATCATCTAATTTGTGGGATGGATGTGTCATGATGGAATATTGATTAAGGGGAAAGTATTTTGAAACATGATTTAGTATATTTACTGGCAGCTGAAAGGCATATTTGATTTATGGATACACAGAGAAACTTGTTTTTAACCACATCAAACACTATCACTACACCTAACCATGGAAATGCTCTGTAAGGATTATAATTACTTTCCAGTGAATGTGACGGACAAACGCAGAGCTGCCGCTTTTGACATTCATCTGCCATTTATGTCACTGTATCAGAATGTCATTGATGAGGAATACAGCTGATGTTACTGTAAATTgatcttttttttttcaaaataaatGACAATATGGCAGTGGTTTGTTGATCTAAAGACTGAAATAGATTTGAAATAAAGTAAGGAATGGACAGTT
>TU1863990
GGGGCGGCGTTTCATGTTGTACTAGCTACGTGTGCTTCTGACAGGCTAGCCAGCAAGCTGAATAATTGCAGTGAACATCATGGTACTACTTGAAAACGACTCGTTTTTGACGGAGTTGACACGGCTGTTCCAGAAATGCAGGACATCAGGCAGTGTTGCCATCACGTTAAAGAAATATGATGGGAGAACCAAACCAGTCCCCAGGAAAGGTCACCCAGTGAATTATGAACCAGCAGACAACAAGTGTCTACTCAGAGCGTCAGATGGCAAGAAGAAAATCAGCACAGTGGTTAGTAGCAAAGAAGTAATCAAGTTCCAGATGGCATACTCTAACCTCCTGAGAGCTCACATGGATGGGCTCAAGAAGAAAGACAAGAAAAGCAAAAGCAAGAAAACCAAAGCCACCCAATGAGCAACAGACTCTTTCATAGCAGACTGGGGAAATCCACACTGGCCTGTACCACCTCCAACTatcatctctacctccatcctaCCTGTTCCGATATGTTCCCTGAGGCCCACCATCCTCCACTTGGGGACAGCTTTGACATCATGCCATTGTTTACACAGCAATGTCTCATCCCTGGCCAGTGAATGGCATCGGTCTAtatagggaggaagggagagccgAGGATGTTTAACACTCAGAAGATACTACAAGCCTTttgatgcacccccccccccccccccccccccccacaaatctATGGTGTGGATCAAAGTTACACGGAGATGCATTCATTTATGGAGTCACTGAAAGGATGGAGCATGTTGATGAATTGCCTTTCAAATCGTTTTAATTTGAACTACTAGGCCCTGTCTATTTATGTTTGAATTATCACTCAGTTTGGTTTGCTTGTCAATTTGATTACATTTTCACTGAAGTTATGATTTACTTTCCAATTGGACCTTGTCTTAACCATTTGTGGATAGATTATTACTGTGTACTATGAGTGAAGATGCCATATACATTTGTTATGGTTGGGGCTGAATGCTTTTTCTTGCTATTCAAATTCATATTATTTTAATGATGGAAAGTGAGATCCTGAGTTTGTTCTTTGTTGGTATTTCTTAAGACAAAATTATTAAGTGGTTGAGTTCCTTATTGGTCCAATTAATTTTCTGTAAACTCAGTTGTAAGGCAAGCTGTAGAGGAAGGGTCCCAAAGTTAGCTGACACAAGGCCGCTTTGGTACTTAGAAATGTGCTGTTTCCTGTGTTTAATCATCTAATTTGTGGGATGGATGTGTCATGATGGAATATTGATTAAGGGGAAAGTATTTTGAAACATGATTTAGTATATTTACTGGCAGCTGAAAGGCATATTTGATTTATGGATACACAGAGAAACTTGTTTTTAACCACATCAAACACTATCACTACACCTAACCATGGAAATGCTCTGTAAGGATTATAATTACTTTCCAGTGAATGTGACGGACAAACGCAGAGCTGCCGCTTTTGACATTCATCTGCCATTTATGTCACTGTATCAGAATGTCATTGATGAGGAATACAGCTGATGTTACTGTAA
>TU1863991
GGGGCGGCGTTTCATGTTGTACTAGCTACGTGTGCTTCTGACAGGCTAGCCAGCAAGCTGAATAATTGCAGTGAACATCATGGTACTACTTGAAAACGACTCGTTTTTGACGGAGTTGACACGGCTGTTCCAGAAATGCAGGACATCAGGCAGTGTTGCCATCACGTTAAAGAAATATGATGGGAGAACCAAACCAGTCCCCAGGAAAGGTCACCCAGTGAATTATGAACCAGCAGACAACAAGTGTCTACTCAGAGCGTCAGATGGCAAGAAGAAAATCAGCACAGTGGTTAGTAGCAAAGAAGTAATCAAGTTCCAGATGGCATACTCTAACCTCCTGAGAGCTCACATGGATGGGCTCAAGAAGAAAGACAAGAAAAGCAAAAGCAAGAAAACCAAAGCCACCCAATGAGCAACAGACTCTTTCATAGCAGACTGGGGAAATCCACACTGGCCTGTACCACCTCCAACTatcatctctacctccatcctaCCTGTTCCGATATGTTCCCTGAGGCCCACCATCCTCCACTTGGGGACAGCTTTGACATCATGCCATTGTTTACACAGCAATGTCTCATCCCTGGCCAGTGAATGGCATCGGTCTAtatagggaggaagggagagccgAGGATGTTTAACACTCAGAAGATACTACAAGCCTTttgatgcacccccccccccccccccccccccccacaaatctATGGTGTGGATCAAAGTTACACGGAGATGCATTCATTTATGGAGTCACTGAAAGGATGGAGCATGTTGATGAATTGCCTTTCAAATCGTTTTAATTTGAACTACTAGGCCCTGTCTATTTATGTTTGAATTATCACTCAGTTTGGTTTGCTTGTCAATTTGATTACATTTTCACTGAAGTTATGATTTACTTTCCAATTGGACCTTGTCTTAACCATTTGTGGATAGATTATTACTGTGTACTATGAGTGAAGATGCCATATACATTTGTTATGGTTGGGGCTGAATGCTTTTTCTTGCTATTCAAATTCATATTATTTTAATGATGGAAAGTGAGATCCTGAGTTTGTTCTTTGTTGGTATTTCTTAAGACAAAATTATTAAGTGGTTGAGTTCCTTATTGGTCCAATTAATTTTCTGTAAACTCAGTTGTAAGGCAAGCTGTAGAGGAAGGGTCCCAAAGTTAGCTGAATGTGACGGACAAACGCAGAGCTGCCGCTTTTGACATTCATCTGCCATTTATGTCACTGTATCAGAATGTCATTGATGAGGAATACAGCTGATGTTACTGTAA

Function

NR:

description
signal recognition particle 14 kDa protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574475.2 False 1683 mRNA 0.41 5 45298446 45301424
TU1863990 False 1533 TUCP 0.42 5 45298499 45301327
TU1863991 True 1279 TUCP 0.43 6 45298499 45301327

Neighbor

gene id symbol gene type direction distance location
LOC110497973 LOC106583826 coding upstream 2071 45291705 ~ 45296375 (+)
LOC110497972 LOC106582486 coding upstream 6788 45266098 ~ 45291658 (+)
LOC110497971 LOC106582637 coding upstream 45618 45217001 ~ 45252828 (+)
trnaa-ugc-144 NA coding upstream 55468 45242903 ~ 45242978 (+)
LOC110497969 siva1 coding upstream 100104 45174289 ~ 45198342 (+)
zgc:162989 pp14b coding downstream 103212 45404636 ~ 45421914 (+)
bub1bb LOC106582108 coding downstream 125651 45427075 ~ 45430207 (+)
LOC110497981 LOC106581963 coding downstream 143402 45444826 ~ 45470840 (+)
si:dkey-248g15.3 NA coding downstream 332210 45633634 ~ 45635163 (+)
LOC110497986 LOC106581668 coding downstream 361718 45663142 ~ 45672367 (+)
G1629047 NA non-coding upstream 41330 45256900 ~ 45257116 (+)
G1629028 NA non-coding upstream 86326 45211893 ~ 45212120 (+)
G1628861 NA non-coding upstream 179791 45118452 ~ 45118655 (+)
G1629069 NA non-coding downstream 9452 45310876 ~ 45377620 (+)
G1629113 NA non-coding downstream 77619 45379043 ~ 45379377 (+)
G1629115 NA non-coding downstream 78937 45380361 ~ 45380579 (+)
G1629117 NA non-coding downstream 79886 45381310 ~ 45381540 (+)
G1629120 NA non-coding downstream 82100 45383524 ~ 45383819 (+)
G1628865 LOC105030512 other upstream 104205 45186962 ~ 45194241 (+)
LOC110497964 LOC106583112 other upstream 244895 45051160 ~ 45053552 (+)
G1628689 NA other upstream 411273 44886871 ~ 44887173 (+)
G1628550 NA other upstream 412212 44829922 ~ 44886234 (+)
G1628488 NA other upstream 551000 44688382 ~ 44747446 (+)
G1629134 spit1 other downstream 95407 45396831 ~ 45399822 (+)
G1629200 NA other downstream 200370 45501794 ~ 45502263 (+)
G1629210 NA other downstream 214750 45516174 ~ 45516648 (+)
G1629779 LOC106580335 other downstream 712300 46013724 ~ 46016639 (+)
G1629912 NA other downstream 923958 46225382 ~ 46225820 (+)
G1628486 NA other upstream 549574 44683362 ~ 44748925 (+)

Expression


Co-expression Network