Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110497976 |
| gene name | LOC106582172 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 45317764 ~ 45378227 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021574471.2 | False | 5479 | mRNA | 0.51 | 18 | 45317764 | 45378223 |
| XM_021574472.2 | False | 5191 | mRNA | 0.51 | 17 | 45317764 | 45378223 |
| XM_036954921.1 | False | 5663 | mRNA | 0.51 | 19 | 45317764 | 45378224 |
| XM_036954922.1 | False | 5576 | mRNA | 0.51 | 19 | 45317764 | 45378224 |
| XM_036954923.1 | False | 5567 | mRNA | 0.51 | 18 | 45317764 | 45378224 |
| XM_036954924.1 | False | 4144 | mRNA | 0.55 | 19 | 45319245 | 45378227 |
| TU1864392 | True | 602 | lncRNA | 0.45 | 3 | 45367282 | 45378061 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| xgb | LOC106582340 | coding | downstream | 151 | 45300133 ~ 45317613 (-) |
| LOC110497970 | LOC106582697 | coding | downstream | 110861 | 45199833 ~ 45206903 (-) |
| LOC118941480 | NA | coding | downstream | 154935 | 45158163 ~ 45162829 (-) |
| LOC110497961 | LOC106582929 | coding | downstream | 202078 | 45055679 ~ 45115686 (-) |
| LOC110497960 | LOC106583292 | coding | downstream | 473858 | 44821022 ~ 44843906 (-) |
| LOC100136686 | LOC106610865 | coding | upstream | 6131 | 45384358 ~ 45400312 (-) |
| zfyve19 | LOC106582020 | coding | upstream | 45375 | 45423602 ~ 45427275 (-) |
| LOC110498581 | LOC106611608 | coding | upstream | 131041 | 45509268 ~ 45510014 (-) |
| LOC118941482 | NA | coding | upstream | 157565 | 45535792 ~ 45537427 (-) |
| LOC110498366 | plcb2 | coding | upstream | 160761 | 45538988 ~ 45551127 (-) |
| G1629400 | NA | non-coding | downstream | 57921 | 45259591 ~ 45259843 (-) |
| G1629399 | NA | non-coding | downstream | 59462 | 45257937 ~ 45258302 (-) |
| G1629398 | NA | non-coding | downstream | 61010 | 45256524 ~ 45256754 (-) |
| G1629026 | NA | non-coding | downstream | 106822 | 45210538 ~ 45210942 (-) |
| G1629453 | NA | non-coding | upstream | 53075 | 45431302 ~ 45431930 (-) |
| G1629454 | NA | non-coding | upstream | 53872 | 45432099 ~ 45432591 (-) |
| G1629462 | NA | non-coding | upstream | 66621 | 45444848 ~ 45445257 (-) |
| G1629471 | LOC106581963 | non-coding | upstream | 81541 | 45459768 ~ 45460583 (-) |
| G1629474 | NA | non-coding | upstream | 88152 | 45466379 ~ 45466658 (-) |
| G1627068 | NA | other | downstream | 1908655 | 43408727 ~ 43409109 (-) |
| G1626324 | NA | other | downstream | 2479330 | 42759294 ~ 42838434 (-) |
| G1626232 | LOC106611303 | other | downstream | 2676491 | 42640449 ~ 42641273 (-) |
| LOC110498355 | atg2b | other | downstream | 2847062 | 42465705 ~ 42480874 (-) |
| G1626105 | NA | other | downstream | 3061967 | 42255235 ~ 42255797 (-) |
| LOC110498001 | NA | other | upstream | 625538 | 46003765 ~ 46008718 (-) |
| G1631005 | NA | other | upstream | 1240980 | 46619207 ~ 46629506 (-) |
| G1631120 | LOC106612182 | other | upstream | 1452107 | 46830334 ~ 46830650 (-) |
| G1632192 | LOC106575636 | other | upstream | 2538068 | 47916295 ~ 47980466 (-) |
| G1632228 | NA | other | upstream | 2590287 | 47968514 ~ 47970332 (-) |
