LOC110497981 (LOC106581963)


Basic Information

Item Value
gene id LOC110497981
gene name LOC106581963
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45444826 ~ 45470840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574481.2
ctCTCTGTATGGCTGTGATAGTCTCTCATCCTGGATACTGCCTTTCCTCTCTGGTTTTGTCCCTTTCACTGGCCACCCTGTGTCCCCGGGAGCAGGCAGCGGTGCAGCGGCACACGGACAAGTTGTTAGCCACGGAGGAAGCTGGGGATGAATCATCCCCCAAAAAAGAGCCATTGAGATGGCAGTGTGTGCGTCTGCCTGGAGGGAGGAACGCGTCAAGCTTTCTCAAGCAAGCAGCAGCCTGCAGTGTGTGCCTGCTTGAGAGCCAGCCCTCctcgactgtgtgtgtgtgtatattcctGTGTGAGGGTTTGTGTGACGTAGTGTGTATAACGAGTGCTTGTtgtacagtgtatgtgtgtgtgcgcactctTGCTCGCAAGCCTCTGCCCTTCCTGGAGGAAAGGCTCTCCTTTTCAGCGAACCGCAAGGGCCGTCTTGAGTTTGGCAAGCTGTCAGTCTTCTGGACCTGACGATGTTTcgtaagaagaaaaagaagaggcCAGAGATCTCAACACCAAAGAACTTTGAGCACCGGGTGCACACCTCGTTTGACGCCAAGCGGTGCTGCTTTGTGGGCCTGCCGACCCAATGGCACAGTCTGATAGAGAACCTCCGTAGGCCCAAGCCTATGATGGACCCCTCCCGGATCACCTCCGTGGAGCTCAAGCCAAAGAAGACCATCGTGCGTGGGAGTATGATCGGTCATGGAGATTACATCTCAACCATGATCTCCGACATGAGCAGGTTGTCGGTGACCAGCTCCAACTCTCTGAGGAAGAGCAGCCCTTCTTCCAGGAAAAGGGCCCAGTCCCTGGGCAGGCTGGGGGAGGTGAAGGAGGGGGACACCTACCAGTATGAAGACCTGGGAGAAGATGAGCTGGAGCAGCAGCAGTGGAGAGACAGGGCTCATAACATCCACAGTGAGAGTGGGACGAGTATTACCCTACAGCCGAACGGCGTTCTCCCCAGGGCCAAGTCCACCTATGAAGTGAGCATCAGCTGTCTGGAGGGACCCCTGGCTCTATCCCAGCCAATGCAAGTGCCTATTAAGGGGGCTTATATCAGCTGTGAGGTGGGTAGCCCCACAGAGACACTGATGGTTAAGAGAGACTTCCAGGTGCCCAGGGTTATGCCACAAAAACAGAGGCCTATCTCGTTCTTCTACAGCCCAGCCATGGCTGTCCAGCATACCGACCATGGGGGTCGCCCCCCTCCGGAGTACAGCACCAACCTCTACATCCACTCCCACAACAGCCCTGGCAGACCATACTCCTCCTACGACCTGAAGGCAGAGTCGGCTCTGAGGCACCACCAGTCAGGCTTCCTACCAAGCACCACCAGTAGTCCCTTCATGAGTGGCATCAGACCCCACAGGACGGTACGCTCCTCAGCCAGCTACACCCTGGGACTGTCTCCCAACATGGGCCTGAGACCCAACGGCCCTGACCCCTTTCTGAGACACTCAGGCTGCCCTAATGCTCCCTTCCCCGGACAGGACAGCCCATCCCAGCTCCGGCCTTCCCCCACAGGCTCCCTGGCCACCAGCCCCCCAGGCACATGTTCCCCTGCCTTCAGACCCCCTCAGCACCCACAGAGGCCGCCACCAGACCCCCCCAAGGTGACCCATAAACAGTTTAAGGCTGCCCTGAACATGGTGGTGGACAAGGGAGACCCTCGGTCGTACCTGGAGAACTTTGTAAAGATTGGAGAAGGGTCCACAGGGGTGGTGTGTATCGCTCGGGAGAAACACAGCGGCAGGCAGGTGGCCGTGAAGATGATGGACCTGCGGAGACAACAACGTAGAGAGCTGCTTTTCAACGAGGTGGTGATCATGAGGGACTACCAGCACAGGAATGTGGTGGAGATGTTTAAAAGTGCCCTGGTGGAGGAGGAGCTCTGGGTCATTATGGAGTACCTACAGGGTGGAGCACTAACCAACATCGTGTCTGAGACCAGGCTGAGTGAGGAGCAGATAGCCACAGTGTGTGAGGCTGTGCTGCAAGCCCTGGCCTACCTTCACTCCCAGGGGGTTATCCACAGGGACATCAAGAGTGACTCCATACTGCTAACACTGGATGGGAGGATCAAGCTGTCCGACTTTGGGTTCTGTGCTCAGATCAGTAAAGACATCCCCAAAAGGAAGTCTTTAGTGGGAACACCCTACTGGATGGCTCCGGAGGTCATCTCTAAATCACCATACAGCACTGAGGTAGATGTGTGGTCTCTGGGTATCATGGTAGTTGAGATGGTGGATGGAGAGCCCCCTTACTTCAGTGAGACCCCTGTTGCAGCAATGAGAAGACTGAGGGATGAGCCAGCTCCCACTGTACGGAACTCAACACAGGTCTCCCCGGTGTTGAAGAACTTCCTGGACCGTATGTTGATCCGAGACCCAGTGGAGCGTGCCAGCGCCACAGACCTGCTAGAACACCCCTTCCTCCTACAGAGCGGCTCCCCGCAGTGCCTGGTGCCCCTGGTGGAACAGTACCGCAAGCGCATGTCCCGCTGCTGATTCTCCCCCCCTTGATGGACCCTGATCTCTGATTACTACTGTACCCTGAGTGTGACCTGCCCAGGCCCAACCCAGTCAGCAACCATCCCAGGGAGGGAGCAGCACCAGAGAGCCTGGTGCTGCTACAGAGCTCATGGCAGCAGGCCGGCAGGCTTGGTAGACAGTGACACAGCCTGGGCCTGCAAATCTAAGAAGCACTTTAGCAGTGAGTTGGCATAGTGTTACGGCAGCATGCAAACAAACAGTATTCCTCACTCATCTCAACAACGTCTGGGCCTACCTGTGATAGACAACATCCAATAGAATTCCTCTCAACATAACACCAATCTAGCATTGGTGCATTATATAAAACTTGAAATCCAAGGGAACTGTAAACTGTAGCATATTGTGAACCTTTACCGTAATTGAGCAGTTTCCCATCGTAGTGTTTGGATATTAGTTGTGTATTTTCAGCTTGTGCTATAGGCTCAAGCTGTGGTAGCTCATGACTTTGAGAGAAGCGTGATGTTACATACCTCTACAACCATATGGGACACTGACTGAAGTTCAGTGAAACCTTGCACCTTGTCAGTGAACAATTTGCATGGCCAAATGAAGGCACACCTGGCCTGATCGGAATGGTTAAAACATGCTACTGAGAGATGACATGAGAGACATCCTCCAACATCACCATGACAAATGTGTGGATGGGTTGGCTGTTTATTTTTATTGGGCTCAATGAATcatatttattttaatatttattATATTTTGCTTTTCTGAAAAGGGTTGTGAACTGTTTGTAGCCTAAGATGTGAAATTGCAAATAAGTAAACATTTTAGATTATCAACTTGAAATGTAGCGGTTGAACAAATAATGtaaatacagatactgtatattaggaCTTACTACTTGCAGAGCCATTGTATAGTTAGTTATATGGGATGAATTTGACTTAATTTTGAAAGTGTTTGTGTTTACGCTTGGACGCTGTGTTAGTATTGCCTCAAACATCCCTTCCACTGTGTGGTGACTGACTTTTGAAACTACAGGATGTGTGTGTTGCTactgaacatgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgcagtatTTGCATTGGTTTGAATAGATAAAGCACACAGGTTTGGCATGTGAAGAACGTCCACCAGCTGAGAGCACATTGCACATTGTCTTTGTATTCTTACCAGTGACACAACATATTTCatgtatttgtatttctatgtagGACATTCATGAAAAAGAGAATTATACATTATTTACATTTTCTAAAAATCAATAAATAATGCATATTGACTCTT
>TU1864072
GGCAGCATGCAAACAAACAGTATTCCTCACTCATCTCAACAACGTCTGGGCCTACCTGTGATAGACAACATCCAATAGAATTCCTCTCAACATAACACCAATCTAGCATTGGTGCATTATATAAAACTTGAAATCCAAGGGAACTGTAAACTGTAGCATATTGTGAACCTTTACCGTAATTGAGCAGTTTCCCATCGTAGTGTTTGGATATTAGTTGTGTATTTTCAGCTTGTGCTATAGGCTCAAGCTGTGGTAGCTCATGACTTTGAGAGAAGCGTGATGTTACATACCTCTACAACCATATGGGACACTGACTGAAGTTCAGTGAAACCTTGCACCTTGTCAGTGAACAATTTGCATGGCCAAATGAAGGCACACCTGGCCTGATCGGAATGGTTAAAACATGCTACTGAGAGATGACATGAGAGACATCCTCCAACATCACCATGACAAATGTGTGGATGGGTTGGCTGTTTATTTTTATTGGGCTCAATGAATcatatttattttaatatttattATATTTTGCTTTTCTGAAAAGGGTTGTGAACTGTTTGTAGCCTAAGATGTGAAATTGCAAATAAGTAAACATTTTAGATTATCAACTTGAAATGTAGCGGTTGAACAAATAATGtaaatacagatactgtatattaggaCTTACTACTTGCAGAGCCATTGTATAGTTAGTTATATGGGATGAATTTGACTTAATTTTGAAAGTGTTTGTGTTTACGCTTGGACGCTGTGTTAGTATTGCCTCAAACATCCCTTCCACTGTGTGGTGACTGACTTTTGAAACTACAGGATGTGTGTGTTGCTactgaacatgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574481.2 False 3928 mRNA 0.51 9 45444826 45470840
TU1864072 True 851 lncRNA 0.38 1 45469653 45470503

Neighbor

gene id symbol gene type direction distance location
bub1bb LOC106582108 coding upstream 14619 45427075 ~ 45430207 (+)
zgc:162989 pp14b coding upstream 22912 45404636 ~ 45421914 (+)
LOC110497977 LOC106582390 coding upstream 143402 45298446 ~ 45301424 (+)
LOC110497973 LOC106583826 coding upstream 148451 45291705 ~ 45296375 (+)
LOC110497972 LOC106582486 coding upstream 153168 45266098 ~ 45291658 (+)
si:dkey-248g15.3 NA coding downstream 162794 45633634 ~ 45635163 (+)
LOC110497986 LOC106581668 coding downstream 192302 45663142 ~ 45672367 (+)
LOC110497988 LOC106581430 coding downstream 214018 45684858 ~ 45720183 (+)
LOC110497992 LOC106581094 coding downstream 323050 45793890 ~ 45798812 (+)
LOC110497991 LOC106580844 coding downstream 345133 45815973 ~ 45862580 (+)
G1629152 NA non-coding upstream 2365 45441542 ~ 45442461 (+)
G1629120 NA non-coding upstream 61007 45383524 ~ 45383819 (+)
G1629117 NA non-coding upstream 63286 45381310 ~ 45381540 (+)
G1629115 NA non-coding upstream 64247 45380361 ~ 45380579 (+)
G1629113 NA non-coding upstream 65449 45379043 ~ 45379377 (+)
G1629181 NA non-coding downstream 6568 45477408 ~ 45477781 (+)
G1629182 NA non-coding downstream 7665 45478505 ~ 45478812 (+)
G1629183 NA non-coding downstream 8302 45479142 ~ 45479452 (+)
G1629193 NA non-coding downstream 21734 45492574 ~ 45492839 (+)
G1629204 NA non-coding downstream 35341 45506181 ~ 45506583 (+)
G1629134 spit1 other upstream 45004 45396831 ~ 45399822 (+)
G1628865 LOC105030512 other upstream 250585 45186962 ~ 45194241 (+)
LOC110497964 LOC106583112 other upstream 391275 45051160 ~ 45053552 (+)
G1628689 NA other upstream 557653 44886871 ~ 44887173 (+)
G1629200 NA other downstream 30954 45501794 ~ 45502263 (+)
G1629210 NA other downstream 45334 45516174 ~ 45516648 (+)
G1629779 LOC106580335 other downstream 542884 46013724 ~ 46016639 (+)
G1629912 NA other downstream 754542 46225382 ~ 46225820 (+)
LOC110498004 LOC106580093 other downstream 787079 46257919 ~ 46318609 (+)
G1629175 NA non-coding upstream 1439 45467960 ~ 45468214 (+)
G1629174 NA non-coding upstream 3592 45465807 ~ 45466061 (+)
G1629173 NA non-coding upstream 5350 45464093 ~ 45464303 (+)
G1629170 NA non-coding upstream 7596 45461829 ~ 45462057 (+)
G1629167 NA non-coding upstream 10338 45459100 ~ 45459315 (+)

Expression


Co-expression Network