LOC110497982 (LOC106581812)


Basic Information

Item Value
gene id LOC110497982
gene name LOC106581812
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45561747 ~ 45613546 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574483.2
GGCTCAGCCAGCTACCGTGTGCTAAGGACCTGCCTCCTTCACAGGCGATCACAGTGACAGGGGCtcggagagagaaaggaggtacCCCAAACCCAGACGGGTACATCCACATCCCCCTCACAGCATTTTCCATGTGTGGTGTCTCTCCCTCGCTGTGATACTGTAGCTGGCTGTTCTTGTGAGCCGCCATTTGCCTGCATGAGTGCTGGTGGTgttcctttccctctctgtcctatTCCTGGTGTCATCATGGCCTGTTTTGTTTGGATACCCTGACAACCAGAAACTCTAAAGCAGCTCGGCACTTCCCGCCCTGCCTCTCTaCCCTCAGTGACGTCATGttgaagaaagagaaggatgtgGAGCTGGATAAGAAGATTGAGGCTCTCCGCAGGAAGAATGAAGCACTCATGAAGAGGTACCAGgaggtagaggaagacaaGAAGAGAGCGGAGAAGGAAGGAATGATACTGCAAAGCCCTAAGGGTAAAGCAGGGGACTTAACCATCACCATCAACAAGTCAACCAGCGATCCTCGTGTTGTGATGACCAAACCAGGGACGGGTGGTTCTCCCACCCCAAAGTGGGTCCAGGAGcttggggagagggagacggaggggaaCCTGCTGGGCTCTGGGCGGGGCAGGAGGAAGCAGCTACTGGTCACCATGGCTGGCAACACAAAGGGTAAGAGGGTGGTGAGTGAGAGGCTGGAGAGAAGACCAGGTCCAGGTCCCCTCAGTCCACTGGATGTGAAGAGCCCTACAGAGGACAACCAGCACCGTGTGGAATCAACAGCAAGAGGAAAACACCAGCACACTCACACAGCAAAGAGGGACACAGGACCACAGgaTGAAGTGGGGAAGTGTTTGACAGAGGAGTGTCACTGGCTGTCAGAGTGTGAGCCTCACCACCAGGAGTCTGAGAGGCTAGACCCAGCGGGCGACACAGACCTCACCATCCCCACGTCTAAAGTGGAGCAGCAGGAGTACTTGTGCTGGAAGATGGAGCGTGAGCAGATCGACCGTGAACGCTTGGCGCGCCACAAAAATGCCAAGGGCCAGTGGAGGCGGGCATGGGACATGGACAAAACAGAGAATATGTTTTCAGATAAATCtcctagggagagagaaagggggcctACAGCCAGAGGAGGAAGAAATGCAAAGAGAGGTCACCCCAAATCAAATGCTGATCCACTGGGTCAGCAGCTGTGGGGCAAAGACAAGCGGGGTAAAAATGTTCCAGTGGTCAGCAGTAAAGCCAAGGGCAAGGACCGGCTGACTGGGAGGGCCAGAAGATGGGATGCCAGCGAGGATGGGGAGGATTTGCAGGCCTCCAAGACTAGTTTGGAGGAATTCTTAGAAGAGCTTGATGCTTTGGCTGACCCTGACATAGATGACTCCACTGCAGAAACTCCAGAGGTCAAAGAGGGTGACCTCAAAATGGAGTCTTCACTAACCCTGGATGTGGTGAAGACCGAGAAAGTGAGTGGAAGCGTCAGTCCTGGCCTGGACAAGGCCGAGACGGCTCAGGCCCCAGCCGACCCCCTGGAGGACGGGACATCCAGACAGGGGAAGGCTGAGGCCTCGCCCCCTCAAGCTACAGAGAAGAAGGTCCGCTTCTCAGAGGAGCTCATCAAGGGGCCCGGGGCCTACGAGAAGTCCAGTACTGGAGCCCAGAACTCTGCCCGCTCAGAAACCAAGGGCACCAGCGTGTTAAAAGTTGCCTCCCCCATCAAAAACGGACAGAAGTTCGAGGAGCAGAAGCAGTCCCCCAAGGGCGACCAGAAGGATGCTGGTAATGCCCTGGACTGGGGGGATCGGCAGGCTGCAGCTGTCCAGGCACAGAGCTCATCTGATGGGCATAGACAGGGTCAGGAGGGCCCTCCGTTTCTTGATGCCTCCAAAACAGAATGTGCTGAAAGCGGCCATGACTGTGTGCTCAGCCCTGTTCTTCTCATTTCACACAGCGATGCCCCTCCACAGGATAATTCTGTCCAGCCTTTAGAGCATGCCAAGAGCAATACAGAGGAGCTGATTGACTCCAGTCTGTCTGTTCTCAGCCTGGAGTCAGGAGAGACTCACCCAACCCACACCACCAGTACCGATAAGGATGCTAGCTGCTCAAGGTGGGAAAAGGAAACAACACATGTTCAAGTGAAGTCATTTTGAGCCTTTTGTCTGCTTGAAAATACTTTGCTTACAAGCACTTTATTCTTTATGAGGTATGAGTACTGACATGTCATACATTACTTAAAGttggaatccttaatggtgaaacagcTGCGTCCGTTTGCGATATTACAAtaacaaagaagttactgcaaacaacgaATACAGTTTTTTCCCCTCGGACATCATTACACGCGTGATAGAAGAGCACAATATGTATtgcaatttttttttaccatgctGCACGGTGCTCCTCAGCTCAgcaacaggaacaatggtggtggtggggcggcCAGCAGCGCTGTTTCTCCTTAttgcggattccatctttaagtGTTATTTAAATGGCTGTTTTTGTTTACATTTGAAGTATTATTTCAAGGTACCAGTCCCAATGCTTGTATTAGTTCAGTTCCTATGGATGACTAACCTACATAACCTGAACAGGCCCTGCCATTAACCTTTGCCAGCCTTAGCAGTTTGAATGACAAAATATAATTAGCATTATATGCTAATAGTTGTACACTGACTTTatttacagtactagtcaaaagtttggacacacctactcattccatggcttttcatttttttttactattttctacattgtacaaaaataat
>XM_021574482.2
aggacagaaggaggaggggacaggCAGGGACAGGCAGGGAAAGGGGTGTGAGAGGTAATTTTAACTGAGAGCAAGTgctccagagagagggagagagcaagagcatgtgtgtgggagggacagagagtgagagagtgggagagcaAGCCAGCAGACGGGGGCTGTAAATCCGTTAACAGGGGCGCTCTGTGCATTTGTTAGACATCTTGGCTGTCAGCCCAACTTGGCTCATTGTAATCAAGGCATGATCGTGGACTCCAAGCAGCCCTCTCCGCCACCTCGGCTGTTGCCTCGCGCTTGGACCCAGCCCAGGTTTCAGCGCTGACATGGAGAGACCTaCCCTCAGTGACGTCATGttgaagaaagagaaggatgtgGAGCTGGATAAGAAGATTGAGGCTCTCCGCAGGAAGAATGAAGCACTCATGAAGAGGTACCAGgaggtagaggaagacaaGAAGAGAGCGGAGAAGGAAGGAATGATACTGCAAAGCCCTAAGGGTAAAGCAGGGGACTTAACCATCACCATCAACAAGTCAACCAGCGATCCTCGTGTTGTGATGACCAAACCAGGGACGGGTGGTTCTCCCACCCCAAAGTGGGTCCAGGAGcttggggagagggagacggaggggaaCCTGCTGGGCTCTGGGCGGGGCAGGAGGAAGCAGCTACTGGTCACCATGGCTGGCAACACAAAGGGTAAGAGGGTGGTGAGTGAGAGGCTGGAGAGAAGACCAGGTCCAGGTCCCCTCAGTCCACTGGATGTGAAGAGCCCTACAGAGGACAACCAGCACCGTGTGGAATCAACAGCAAGAGGAAAACACCAGCACACTCACACAGCAAAGAGGGACACAGGACCACAGgaTGAAGTGGGGAAGTGTTTGACAGAGGAGTGTCACTGGCTGTCAGAGTGTGAGCCTCACCACCAGGAGTCTGAGAGGCTAGACCCAGCGGGCGACACAGACCTCACCATCCCCACGTCTAAAGTGGAGCAGCAGGAGTACTTGTGCTGGAAGATGGAGCGTGAGCAGATCGACCGTGAACGCTTGGCGCGCCACAAAAATGCCAAGGGCCAGTGGAGGCGGGCATGGGACATGGACAAAACAGAGAATATGTTTTCAGATAAATCtcctagggagagagaaagggggcctACAGCCAGAGGAGGAAGAAATGCAAAGAGAGGTCACCCCAAATCAAATGCTGATCCACTGGGTCAGCAGCTGTGGGGCAAAGACAAGCGGGGTAAAAATGTTCCAGTGGTCAGCAGTAAAGCCAAGGGCAAGGACCGGCTGACTGGGAGGGCCAGAAGATGGGATGCCAGCGAGGATGGGGAGGATTTGCAGGCCTCCAAGACTAGTTTGGAGGAATTCTTAGAAGAGCTTGATGCTTTGGCTGACCCTGACATAGATGACTCCACTGCAGAAACTCCAGAGGTCAAAGAGGGTGACCTCAAAATGGAGTCTTCACTAACCCTGGATGTGGTGAAGACCGAGAAAGTGAGTGGAAGCGTCAGTCCTGGCCTGGACAAGGCCGAGACGGCTCAGGCCCCAGCCGACCCCCTGGAGGACGGGACATCCAGACAGGGGAAGGCTGAGGCCTCGCCCCCTCAAGCTACAGAGAAGAAGGTCCGCTTCTCAGAGGAGCTCATCAAGGGGCCCGGGGCCTACGAGAAGTCCAGTACTGGAGCCCAGAACTCTGCCCGCTCAGAAACCAAGGGCACCAGCGTGTTAAAAGTTGCCTCCCCCATCAAAAACGGACAGAAGTTCGAGGAGCAGAAGCAGTCCCCCAAGGGCGACCAGAAGGATGCTGGTAATGCCCTGGACTGGGGGGATCGGCAGGCTGCAGCTGTCCAGGCACAGAGCTCATCTGATGGGCATAGACAGGGTCAGGAGGGCCCTCCGTTTCTTGATGCCTCCAAAACAGAATGTGCTGAAAGCGGCCATGACTGTGTGCTCAGCCCTGTTCTTCTCATTTCACACAGCGATGCCCCTCCACAGGATAATTCTGTCCAGCCTTTAGAGCATGCCAAGAGCAATACAGAGGAGCTGATTGACTCCAGTCTGTCTGTTCTCAGCCTGGAGTCAGGAGAGACTCACCCAACCCACACCACCAGTACCGATAAGGATGCTAGCTGCTCAAGGTGGGAAAAGGAAACAACACATGTTCAAGTGAAGTCATTTTGAGCCTTTTGTCTGCTTGAAAATACTTTGCTTACAAGCACTTTATTCTTTATGAGGTATGAGTACTGACATGTCATACATTACTTAAAGttggaatccttaatggtgaaacagcTGCGTCCGTTTGCGATATTACAAtaacaaagaagttactgcaaacaacgaATACAGTTTTTTCCCCTCGGACATCATTACACGCGTGATAGAAGAGCACAATATGTATtgcaatttttttttaccatgctGCACGGTGCTCCTCAGCTCAgcaacaggaacaatggtggtggtggggcggcCAGCAGCGCTGTTTCTCCTTAttgcggattccatctttaagtGTTATTTAAATGGCTGTTTTTGTTTACATTTGAAGTATTATTTCAAGGTACCAGTCCCAATGCTTGTATTAGTTCAGTTCCTATGGATGACTAACCTACATAACCTGAACAGGCCCTGCCATTAACCTTTGCCAGCCTTAGCAGTTTGAATGACAAAATATAATTAGCATTATATGCTAATAGTTGTACACTGACTTTatttacagtactagtcaaaagtttggacacacctactcattccatggcttttcatttttttttactattttctacattgtacaaaaataat
>XM_021574484.2
aggacagaaggaggaggggacaggCAGGGACAGGCAGGGAAAGGGGTGTGAGAGGTAATTTTAACTGAGAGCAAGTgctccagagagagggagagagcaagagcatgtgtgtgggagggacagagagtgagagagtgggagagcaAGCCAGCAGACGGGGGCTGTAAATCCGTTAACAGGGGCGCTCTGTGCATTTGTTAGACATCTTGGCTGTCAGCCCAACTTGGCTCATTGTAATCAAGGCATGATCGTGGACTCCAAGCAGCCCTCTCCGCCACCTCGGCTGTTGCCTCGCGCTTGGACCCAGCCCAGGTTTCAGCGCTGACATGGAGAGACCTaCCCTCAGTGACGTCATGttgaagaaagagaaggatgtgGAGCTGGATAAGAAGATTGAGGCTCTCCGCAGGAAGAATGAAGCACTCATGAAGAGGTACCAGgaggtagaggaagacaaGAAGAGAGCGGAGAAGGAAGGAATGATACTGCAAAGCCCTAAGGGTAAAGCAGGGGACTTAACCATCACCATCAACAAGTCAACCAGCGATCCTCGTGTTGTGATGACCAAACCAGGGACGGGTGGTTCTCCCACCCCAAAGTGGGTCCAGGAGcttggggagagggagacggaggggaaCCTGCTGGGCTCTGGGCGGGGCAGGAGGAAGCAGCTACTGGTCACCATGGCTGGCAACACAAAGGGTAAGAGGGTGGTGAGTGAGAGGCTGGAGAGAAGACCAGGTCCAGGTCCCCTCAGTCCACTGGATGTGAAGAGCCCTACAGAGGACAACCAGCACCGTGTGGAATCAACAGCAAGAGGAAAACACCAGCACACTCACACAGCAAAGAGGGACACAGGACCACAGgaTGAAGTGGGGAAGTGTTTGACAGAGGAGTGTCACTGGCTGTCAGAGTGTGAGCCTCACCACCAGGAGTCTGAGAGGCTAGACCCAGCGGGCGACACAGACCTCACCATCCCCACGTCTAAAGTGGAGCAGCAGGAGTACTTGTGCTGGAAGATGGAGCGTGAGCAGATCGACCGTGAACGCTTGGCGCGCCACAAAAATGCCAAGGGCCAGTGGAGGCGGGCATGGGACATGGACAAAACAGAGAATATGTTTTCAGATAAATCtcctagggagagagaaagggggcctACAGCCAGAGGAGGAAGAAATGCAAAGAGAGGTCACCCCAAATCAAATGCTGATCCACTGGGTCAGCAGCTGTGGGGCAAAGACAAGCGGGGTAAAAATGTTCCAGTGGTCAGCAGTAAAGCCAAGGGCAAGGACCGGCTGACTGGGAGGGCCAGAAGATGGGATGCCAGCGAGGATGGGGAGGATTTGCAGGCCTCCAAGACTAGTTTGGAGGAATTCTTAGAAGAGCTTGATGCTTTGGCTGACCCTGACATAGATGACTCCACTGCAGAAACTCCAGAGGTCAAAGAGGGTGACCTCAAAATGGAGTCTTCACTAACCCTGGATGTGGTGAAGACCGAGAAAGTGAGTGGAAGCGTCAGTCCTGGCCTGGACAAGGCCGAGACGGCTCAGGCCCCAGCCGACCCCCTGGAGGACGGGACATCCAGACAGGGGAAGGCTGAGGCCTCGCCCCCTCAAGCTACAGAGAAGAAGGTCCGCTTCTCAGAGGAGCTCATCAAGGGGCCCGGGGCCTACGAGAAGTCCAGTACTGGAGCCCAGAACTCTGCCCGCTCAGAAACCAAGGGCACCAGCGTGTTAAAAGTTGCCTCCCCCATCAAAAACGGACAGAAGTTCGAGGAGCAGAAGCAGTCCCCCAAGGGCGACCAGAAGGATGCTGGTAATGCCCTGGACTGGGGGGATCGGCAGGCTGCAGCTGTCCAGGCACAGAGCTCATCTGATGGGCATAGACAGGGTCAGGAGGGCCCTCCGTTTCTTGATGCCTCCAAAACAGAATGTGCTGAAAGCGGCCATGACTGTGTGCTCAGCCCTGTTCTTCTCATTTCACACAGCGATGCCCCTCCACAGGATAATTCTGTCCAGCCTTTAGAGCATGCCAAGAGCAATACAGAGGAGCTGATTGACTCCAGTCTGTCTGTTCTCAGCCTGGAGTCAGGAGAGACTCACCCAACCCACACCACCAGTACCGATAAGGCAAGAGAAAATGGGAAGATTGTTTGAAGGACTTTTGATGTTGCTATAACATTTTCTAGAACTGAACAACAACTTGCTTAATTAATTCAAGTGTTTACCATGAGCCTTTTAGTTTAATACAGCACTTGCTTCCAATAACTCTTCGTAGATGTCCTGTGTCTAGTTGGTCAGGTTAAGACTAACATGCGCAATGTTGTTTCTTTTGAAAGGATGCTAGCTGCTCAAGGTGGGAAAAGGAAACAACACATGTTCAAGTGAAGTCATTTTGAGCCTTTTGTCTGCTTGAAAATACTTTGCTTACAAGCACTTTATTCTTTATGAGGTATGAGTACTGACATGTCATACATTACTTAAAGttggaatccttaatggtgaaacagcTGCGTCCGTTTGCGATATTACAAtaacaaagaagttactgcaaacaacgaATACAGTTTTTTCCCCTCGGACATCATTACACGCGTGATAGAAGAGCACAATATGTATtgcaatttttttttaccatgctGCACGGTGCTCCTCAGCTCAgcaacaggaacaatggtggtggtggggcggcCAGCAGCGCTGTTTCTCCTTAttgcggattccatctttaagtGTTATTTAAATGGCTGTTTTTGTTTACATTTGAAGTATTATTTCAAGGTACCAGTCCCAATGCTTGTATTAGTTCAGTTCCTATGGATGACTAACCTACATAACCTGAACAGGCCCTGCCATTAACCTTTGCCAGCCTTAGCAGTTTGAATGACAAAATATAATTAGCATTATATGCTAATAGTTGTACACTGACTTTatttacagtactagtcaaaagtttggacacacctactcattccatggcttttcatttttttttactattttctacattgtacaaaaataat

Function

NR:

description
uncharacterized protein C15orf52-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574483.2 False 2798 mRNA 0.51 14 45561747 45612866
XM_021574482.2 False 2813 mRNA 0.51 14 45561747 45613546
XM_021574484.2 True 3022 mRNA 0.50 14 45561747 45613546

Neighbor

gene id symbol gene type direction distance location
LOC110498366 plcb2 coding downstream 10620 45538988 ~ 45551127 (-)
LOC118941482 NA coding downstream 24320 45535792 ~ 45537427 (-)
LOC110498581 LOC106611608 coding downstream 51733 45509268 ~ 45510014 (-)
zfyve19 LOC106582020 coding downstream 134472 45423602 ~ 45427275 (-)
LOC100136686 LOC106610865 coding downstream 161435 45384358 ~ 45400312 (-)
mthfd1b mthfd1 coding upstream 29471 45643017 ~ 45662977 (-)
LOC118941483 NA coding upstream 53508 45667054 ~ 45668680 (-)
LOC110497987 LOC106581578 coding upstream 58960 45672506 ~ 45682662 (-)
LOC110497989 tmem39b coding upstream 129514 45743060 ~ 45748073 (-)
LOC110497990 LOC106581236 coding upstream 150311 45763857 ~ 45774045 (-)
G1629489 NA non-coding downstream 76399 45484946 ~ 45485348 (-)
G1629488 NA non-coding downstream 77008 45484495 ~ 45484739 (-)
G1629483 NA non-coding downstream 81886 45479616 ~ 45479861 (-)
G1629480 NA non-coding downstream 85879 45475554 ~ 45475868 (-)
G1629477 NA non-coding downstream 92984 45468512 ~ 45468763 (-)
G1629617 NA non-coding upstream 108932 45722478 ~ 45722775 (-)
G1629643 NA non-coding upstream 115207 45728753 ~ 45729051 (-)
G1629670 NA non-coding upstream 177744 45791290 ~ 45792023 (-)
G1630558 NA non-coding upstream 192832 45806378 ~ 45806579 (-)
G1630596 NA non-coding upstream 246858 45860404 ~ 45861600 (-)
G1627068 NA other downstream 2152638 43408727 ~ 43409109 (-)
G1626324 NA other downstream 2723313 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 2920474 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 3091045 42465705 ~ 42480874 (-)
G1626105 NA other downstream 3305950 42255235 ~ 42255797 (-)
LOC110498001 NA other upstream 390219 46003765 ~ 46008718 (-)
G1631005 NA other upstream 1005661 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 1216788 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 2302749 47916295 ~ 47980466 (-)
G1632228 NA other upstream 2354968 47968514 ~ 47970332 (-)

Expression


Co-expression Network