LOC110497986 (LOC106581668)


Basic Information

Item Value
gene id LOC110497986
gene name LOC106581668
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45663142 ~ 45672367 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574489.2
AAAATGTCATGAAAAGCAAAAATGTCTCAGACAGCAGGTGGCAGCATTGAATTGCTGAAAGAAAGAGATGAAGGGCGTAAACCAACCACTGTTTATAGGCGTGTTCACGCGAAGCAATGGGCGTAACTTTGCTCTGGATATTTTGAAGCTTGCTGAGTGCCAAGCTTTCTCGAGGGTTACATAGAAGGATTTCTGGCTGTTGGCCTGAATTAAGACATGAAGAAATACAGAGAACGATGGAGAGCAAATTCTGCATTTTGACCGAAACAGAAGACCTCAAAACCCTGATTTCGAGCACCGAAGAGAGTCTGCAAATTGAAAGGACCAAGACATTGTTTGAGGAGATCCGTGCATCCATCAACAACAATGATGAAGAGGACCGTTCCTTTTGGAGGCCTGTGCTCCCATGGGGGGGCGTTTACACCATCAGGGCAGGGAGGAAGGCCATCTCATGCACCCCTCTGTATGTTAAGATAAGCCTAAAGAACACCTGCACCATCGATGGGTTCCTCATGATTCTTTATGTAATTTTGAGAGACAACCAGAGCTTTCCCCGGGAGGTGGGCATATTCCTGGGCAGGCAGTTTGTGGAGCATTTCCTCTACCTGATGGACTCGTATGACTACACCACCGTTAAGATGCTGTGGATCTGGGACAGGATGTCCAAGAGGCAGTACCGCTCAGTGATCCACCATGCAGCGTTGGAGATCGACCTGTTTGGTAATGAACATGAGAACTTCACCAAGAACTTGGAGACAATGATGTCTACCATGCAGGAGAGTCTGTGCACCAACTGGAGCTGTCCTGCTCGTTTCCAGGAGTTCATACAGAAAACCATCAACATCAATCCTCCTCACGAGCTGCCCCCTAGAGATCCCATTCAGTCAGCTGTGGATGAGTTCTTCTGTCCCAAGATCATTCTCTGCAAAGAACTGGGGTGTAATGGGTTGAGGGAGTTCTCTCAGAGGGTCTTCTGCCATGGACCACCTCCTTTTGTCATTCTCAACATGCAGCTTTGGAAGTCTGAGGAGCTGTCCTATGTTCCCTACCATCTAGCCCTATCCCAACACAGGTACTCACTGGAGGGCGCCACACTCTTCAACAAGGAGGAGCATCACTACTCTGCAGCCTTCCAGATAGACGGCTACTGGATGCACTATGACGGGCTGAGGAGCGACAACCTGATTCTGTTAAACAAGCCCCCTgaactcctccttctctcttcccttgtCTACATCCGCGCCTCAGACAAATGAGATGCACTAATGTAACCAAGCAGGGATGGGGTCGGTTCCATTTTTCATTCCATCATTTCAGGATGAAAATAAATTCTCCTGAATTTACTTGAATTGAAAAGGAATTGACCCCAATTGTGTCACCATGGTCCAGAAGGAAGGAGGTAGATACTAGACAACACTGATAGGGAAGCATCTTTTGAAAAATGCACACTAACATCTTCCTGTTTATTGCCCTTCGTTCACAGAAATAGTATCCAAGTTACTTTACATTTGGCTCATGATGGGTTTTGTCTTCCATTCCTCAGTGAGCTCTTACCAGATACTTTTATCACCTAATCATATTTATTGAAATTTTTATCTAGTTTGAAAAGGCTTATACCACATTTCCAAACTTTTTAGGAGATCATGTCAACAACTTCCTTGTTTTTATACTTTGAGATTACTTTTTGGAATTATGTGCTCCATTTTGCCTGACTGTTGCCTCAAACACTCACTGTGCAAAATGATAAGTTCATCTTCTCTTTGGGCATGCTTGGAATCCAAGAATATATGCATGGACTATAATAGTTCTGGGGAGGTATGCATATTAAAGAATCAACTCAACCTTAAATAGCTCCACTGCAACAAAAACAAAGGTTTGCAGCGTGTTTAGTTGTCTTGGGTGAAATGGTTGCACTTTCCGAGAAGCAAATTCAGCTAATCAAACTTTGATGTAGAATTGtcaacagggtgtgtgtgtgtatatataggctAGACTAGTGAAGCATCTGAGATTGTACAGGACTCATCTACTACAATCCTTTTGTGCATACTAGCCCTGACCTCAGATCAAACTGGTGCTTTTTTTGTACTATTTCCCCTGTTTAAAAACATTTGAAACAGTATTTGCATTTTGTGGAAATTCAATCATTATCCTTAATTTACTTGCTTGTTTTAAGCTGTCCATTGGGCTTCAACTTGGAAGTGAGTCACACAGCGTTAACTTGTATTAAAATGAATACCTGCTCAAATATTTGTATATTGTGTGAATGTATCATTGGATAAAATTTCAGTTCTGTCTTAAATGTAAGTAATTACTTGTACTTACAAGTACCCCAGCATAGTGATGTTACATAAGTGCTTCTTGAGTGCTTACCTTTCACAGTAGCATATAATACCCTGAATTCAAATTATTCTGCACAATTCAATATGGTACATTGTTACATCCCAATCTAAACAAGATGTCAAAGCATTagtaaataaatgtgattttgtAATGCATTTGATCATTTGGAAATAACACTACTGCTCATCACAGGCTTCATATGCACATATGTACTGTTAAGCATTGACCTCTGCCAGTTTCATCTTTGTCAGAACTAAATAATGAAACTCTTTGAGCAACA

Function

NR:

description
uncharacterized protein C14orf28 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574489.2 True 2623 mRNA 0.42 5 45663142 45672367

Neighbor

gene id symbol gene type direction distance location
si:dkey-248g15.3 NA coding upstream 27979 45633634 ~ 45635163 (+)
LOC110497981 LOC106581963 coding upstream 192302 45444826 ~ 45470840 (+)
bub1bb LOC106582108 coding upstream 232935 45427075 ~ 45430207 (+)
zgc:162989 pp14b coding upstream 241228 45404636 ~ 45421914 (+)
LOC110497977 LOC106582390 coding upstream 361718 45298446 ~ 45301424 (+)
LOC110497988 LOC106581430 coding downstream 12491 45684858 ~ 45720183 (+)
LOC110497992 LOC106581094 coding downstream 121523 45793890 ~ 45798812 (+)
LOC110497991 LOC106580844 coding downstream 143606 45815973 ~ 45862580 (+)
LOC110497996 LOC106580630 coding downstream 242436 45914803 ~ 45918675 (+)
LOC110497997 LOC106580683 coding downstream 256959 45929326 ~ 45960769 (+)
G1629320 mthfd1 non-coding upstream 12723 45643017 ~ 45650419 (+)
G1629213 NA non-coding upstream 93027 45524037 ~ 45570115 (+)
G1629211 NA non-coding upstream 143508 45518766 ~ 45519634 (+)
G1629204 NA non-coding upstream 156559 45506181 ~ 45506583 (+)
G1629193 NA non-coding upstream 170303 45492574 ~ 45492839 (+)
G1629336 LOC106581578 non-coding downstream 8633 45681000 ~ 45681254 (+)
G1629306 NA non-coding downstream 48734 45721101 ~ 45722154 (+)
G1629305 NA non-coding downstream 50109 45722476 ~ 45722759 (+)
G1629303 LOC106581236 non-coding downstream 99022 45771389 ~ 45773995 (+)
G1629373 NA non-coding downstream 101710 45774077 ~ 45774279 (+)
G1629210 NA other upstream 146494 45516174 ~ 45516648 (+)
G1629200 NA other upstream 160879 45501794 ~ 45502263 (+)
G1629134 spit1 other upstream 263320 45396831 ~ 45399822 (+)
G1628865 LOC105030512 other upstream 468901 45186962 ~ 45194241 (+)
G1629779 LOC106580335 other downstream 341357 46013724 ~ 46016639 (+)
G1629912 NA other downstream 553015 46225382 ~ 46225820 (+)
LOC110498004 LOC106580093 other downstream 585552 46257919 ~ 46318609 (+)
G1631702 NA other downstream 1987759 47660126 ~ 47661235 (+)
G1631844 NA other downstream 2075330 47747697 ~ 47749082 (+)

Expression


Co-expression Network