LOC110497994 (LOC106583609)


Basic Information

Item Value
gene id LOC110497994
gene name LOC106583609
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45867770 ~ 45871532 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574519.2
tgattGGGCATTTatcaaggaaggaaggaaggactcaAGCAAGGGTGTATTTCTTACATATTGGAACATCGTCCCAGTTCAGCCTACCTAATGACAAATCACCTCAAGCTGTGTTCGGTATAGAGGACACCCGTGTCTACAGAAAGGTGGAAAACGAAACATCACATTTCTTGCGATGAAAATAAAGTGGTGGCTCTGTATTTTATGGAGAGTATTTTCACTTAGTATTGCAATATCTACATCGGGTATTTATGGGTCTCCGTCTGTTTCACGTCCAGTTGGCAGGAGAAAAATCCTCAAACTGGGCACATCACAAGGCGTTGGTGACTTGCTTACAGCCCACCTATCATCCACAGCAAACAGAAAATCAAGCCCGAGGATACTCTCTCACAGTATCTCATTCAGAACACCCCAACTCACACCAGCGCCTGTAAGGATATATTCCTCTCCACCACCCGAGATCCAGCGCCCTACGCTTCTCGATAGGACTGTACCAAAGTCTCAACCTGATTTTGCTACGCTCCCGGACGTTTCGGTTACGTGTTCCAGTGGTGACTTCGTGGTCCGGGTCAAACGGAATTTTTATGGTTTTGAGGCCGACACAGATGAGTTGACGCTGGGAAGCACCTGCAAGAGTAACGGTGTTCTCATGCCTTATGGTGACTTGCTCTTCTCGTATCCATTGATGGAGTGTGATGGCAAACGGCAGATGCCACCGGGTTATCTCATCTATACATTTGTGCTCCATTACACGCCTCTGACCTGGTTCCCACGCAGAGCGCATCGCTTTAACGTGCAGGTCGAGTGTCGGTTTCAAAGGTATCATCATGTTTATCAGCTGGTGGTGCGCCCTACGTGGGAAACACACACCGTGCTTAAAAAGCTAAAGGGGCGCGTTAACTTCCGAATCCAGCTGATGGACGATGCATGGGCCATGCCAGCCAAGTCCCAGGTGTACATGCTGGGACAGACCATTAATTTCCAGGTTTCTGCACTTAATCTATCCCATGGAGGAAAGCTTTTCATCAACCACTGCTATGCCACAACATCTAAAGACTCCAAGACATCCCTCAAGTTCACTGTCATTGACAACTTTGGCTGCATGCTGGAGAGCCAGAAGAACCCTGGTGGCTCTCAGTTTGTCTCCCCCAGGACTGATGACACCCTCCGGTTCTTCCTCAGTGCCTTCCAGTTCACCTCTGACCCAGACACACCGGTCTTCCTTCACTGTAAACTGCATGTGACATCAGAGGAAACCGGCCCCATACACAAGTCTTGCACCTACCAAGAGAACAGGTGGAAAGCTGTCATGGGAGAGGATTCCATCTGTGACTGCTGTGACTCCAAATGTGTGACACCGAAACCCAGAAGATCCATGGTGAAGGGGTTTGCCAGCAGCGGGCCTCTACTGCTCTTAGATCAGCCATCCGCACCAAAGGGTGGTTTCCCACCAGTCAGTCCCTCACTAGTTGAAGACACTGTCTGGTTTGAGACCAAAATGGATGAGTTTGACAACCCAGATCTACTGGAAACCATTGACGTGGAGAAGTATCGTGATAAGGAAGAGGGTTATACTCGTTCCAAGGAGGATGAATCAGTGCCGTTGGAGGGTGAGGAGTCAGTGGTTCAGACTGTGTTTAGAAAGGGGGAGATATTTGAGGGCACACAGGGGTCAGGTGTGAGGGATTCACAGTTGATAAGGGGAGAGGGGTCAGGGTTTAGAGCTGAGGGGACAGGGTTGCGACTAGAGTTTCCATGGGAGAGGGCAGAGTTGAGAGAGAGGAATCCATGGGAGAGTAAGGGATCAGTGTTGACCGAGGAGGGCTCCATTGAAAGGCAATGGATGCATCCACAGGAGGAGTCCTCCCTGGGATCAGAGATGGGGGGAAAGTCTGTATCACAGGAAGAGGTGGTTTCACAGTCCATGAAGGAATGGGGATTTGGGGTGGGTGAGGTGCAACCACTTGTGATTCCTGAGGatgaggggaaggaaggaagagtgGAGTCTGGGGAAACAGATGAGGATGACAAGACGTTTCCACTCTTCTCTGAGACTGGTGAGGAGATCATTAGTGATTTTGACGGGCTGGTAGAGTCCGGGACTGACGGTGGGAAAGACTTGCCCAGGGTTTGGCATTTCAAGTGGTGATGGGGTCAGTGACTGAGACCATACAGTGGTTCATTCTAATCTTAACCATAGACTTCTACTACGGTACACCACTGATACAGTTGAAATAAATAATGCAACTCTTAATTTCTTCATCACCAGATGGAATGGGAAGTCTTTCTACAAGATTTGTTTTACTTTGACTTAAACATTTGAGGAAGTAAACTTTTCAGACAAAATTACAAATCCTTTCCTTGTCTTTATCTCAAAGCAGGAAATGCACATAACGGTAGGTGAAGAATACTGATAATGACATCAATAGGCCCACTGTTTTCCCAGTCAGACATTACATTAATACATTTGCCCCACAATGTTTGTACATACTACATGATTTTTCTGAGCATGCTAACTAGGGTCATTGTAAAATGTGAACATGGGATAACAAACCAACCACTGCTGTCCAAGCAGTATCCACAATATCTCCGCTAAGTGTGTCTTAAGTGCTATAAAGGAAGTTAATGTTTGTTTCCCTGTCGCACTGACTGAGAATCTTTGGTTGAAAATGTTCCAGATCACACCGACTGCATTGCCTCACCTTGATTGAGCTAATAAACTGACTGGTACAGAAAG

Function

NR:

description
uncharacterized protein LOC110497994

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574519.2 True 2737 mRNA 0.47 8 45867770 45871532

Neighbor

gene id symbol gene type direction distance location
LOC110497993 LOC106583710 coding downstream 49992 45795256 ~ 45817778 (-)
LOC118941361 NA coding downstream 78500 45786706 ~ 45789270 (-)
LOC110497990 LOC106581236 coding downstream 93725 45763857 ~ 45774045 (-)
LOC110497989 tmem39b coding downstream 119697 45743060 ~ 45748073 (-)
LOC110497987 LOC106581578 coding downstream 185108 45672506 ~ 45682662 (-)
LOC110497995 LOC106580785 coding upstream 307 45871839 ~ 45895860 (-)
LOC110498000 NA coding upstream 91549 45963081 ~ 45983398 (-)
LOC118941484 NA coding upstream 124490 45996022 ~ 46001745 (-)
LOC110498001 NA coding upstream 132534 46003765 ~ 46008718 (-)
LOC110498002 LOC106580335 coding upstream 142188 46013720 ~ 46016760 (-)
G1630596 NA non-coding downstream 6170 45860404 ~ 45861600 (-)
G1630558 NA non-coding downstream 61191 45806378 ~ 45806579 (-)
G1629670 NA non-coding downstream 75747 45791290 ~ 45792023 (-)
G1629643 NA non-coding downstream 138719 45728753 ~ 45729051 (-)
G1629617 NA non-coding downstream 144995 45722478 ~ 45722775 (-)
G1630623 NA non-coding upstream 34663 45906195 ~ 45907422 (-)
G1630642 NA non-coding upstream 59666 45931198 ~ 45936314 (-)
G1630645 NA non-coding upstream 65614 45937146 ~ 45937616 (-)
G1630661 NA non-coding upstream 85687 45957219 ~ 45957543 (-)
G1627068 NA other downstream 2458661 43408727 ~ 43409109 (-)
G1626324 NA other downstream 3029336 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 3226497 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 3397068 42465705 ~ 42480874 (-)
G1626105 NA other downstream 3611973 42255235 ~ 42255797 (-)
G1631005 NA other upstream 747675 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 958802 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 2044763 47916295 ~ 47980466 (-)
G1632228 NA other upstream 2096982 47968514 ~ 47970332 (-)

Expression


Co-expression Network