LOC110498000


Basic Information

Item Value
gene id LOC110498000
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 45963081 ~ 45983398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469751.2
cCCTAAAGTAAGGAAATAGTGTCTTCTGTGTGTACTTCATATTTTTGCAaatttagtacgacatccgggaacttttggcatactaactatatccatactatgaccaattaGCATACTATATtgcgGTCCTTCATTCCAAAACCTGAAGCCCCCTGTCCTCAGCAGGAAAGACCAGGAAAAAGTGTTGGCTTAAGGCTCGGTGGGTGACCGGTAACAATGATTCAACCAAGCTGTTCCAGGCCTGGAGTGGCACGCTGGAACTTCCAGAGGCTTGTAGACCTGAAGCAGTGTGATGTGATCCAGATCTGACATCCCTATTACCTCAACCACAGTCCTCACAGCTTAAGTCGTCTGCCCCTGCACCTGCTACACCAGCCACGACAGGTGATACAGATCTGCCACCCCCAGCAGTTCAGCTGCAGTCACAGCAGTCCTCTGCTGTGGTATTTCATTTACCGGCTGCACCAGTTCCTACTACACTGGCCATGAAGGGAGATACTATTGAGGAGACCCAGATGGATACAGATCTGCCATGCACTCCACCAGTGCCTGACAGACTCATCTCTGAGAAAACAGAGATGGGTGGCTGACAAGGAAaaataaaacacaacacacactctctctctctgtcatacacactcacacacattattCCCAGTGTAAATGAGTTGTATTTACTTGTTTATTTTATGTTTGCTCAATTTGATTTTAGGATTTGAGATATCTATTCCTACATATCCATTCTCAATATCTACATAATTACTCTAAATATCTATCAAATCAAAGTGTTATTGATATTGTAAAATACTTGCTTAATTTGTATAGTTTGAGGAAATTCTGTGTGCTTTTTAAAAACAtgcctccctctcacacacacattagacccaatgtaaatacattgtttattttATGTATGCTCCATTTTGTTTGAGGATTGTCAAATCAAAGTTTTTTTGTCacgtgtgctgaatacaacatgtgtaga
>XR_002469750.2
tttcttcaaatctgaaagcaatgtgaagccacgcccatcttctgaagaattgcattatggtcCCTAAAGTCCTTCATTCCAAAACCTGAAGCCCCCTGTCCTCAGCAGGAAAGACCAGGAAAAAGTGTTGGCTTAAGGCTCGGTGGGTGACCGGTAACAATGATTCAACCAAGCTGTTCCAGGCCTGGAGTGGCACGCTGGAACTTCCAGAGGCTTGTAGACCTGAAGCAGTGTGATGTGATCCAGATCTGACATCCCTATTACCTCAACCACAGTCCTCACAGCTTAAGTCGTCTGCCCCTGCACCTGCTACACCAGCCACGACAGGTGATACAGATCTGCCACCCCCAGCAGTTCAGCTGCAGTCACAGCAGTCCTCTGCTGTGGTATTTCATTTACCGGCTGCACCAGTTCCTACTACACTGGCCATGAAGGGAGATACTATTGAGGAGACCCAGATGGATACAGATCTGCCATGCACTCCACCAGTGCCTGACAGACTCATCTCTGAGAAAACAGAGATGGGTGGCTGACAAGGAAaaataaaacacaacacacactctctctctctgtcatacacactcacacacattattCCCAGTGTAAATGAGTTGTATTTACTTGTTTATTTTATGTTTGCTCAATTTGATTTTAGGATTTGAGATATCTATTCCTACATATCCATTCTCAATATCTACATAATTACTCTAAATATCTATCAAATCAAAGTGTTATTGATATTGTAAAATACTTGCTTAATTTGTATAGTTTGAGGAAATTCTGTGTGCTTTTTAAAAACAtgcctccctctcacacacacattagacccaatgtaaatacattgtttattttATGTATGCTCCATTTTGTTTGAGGATTGTCAAATCAAAGTTTTTTTGTCacgtgtgctgaatacaacatgtgtaga
>XR_002469752.2
atagaataaagtaggtggagtcttgtcgtttcggtcttcttgactggtcggagggttggaggcgggccttgctctagccagagcagaagccccattggtgcacagcggAGCCTTATCCTGAGCATCCGACCaatagagggggtcagtcttgtggctgggtgtatgtgttcttgcgacggaatgtctttgtttatatgagctatgtgtatgaatatttatataacacttTGCTACTTGTCTTGGCCAGACGATGTACATCCCTCACTTATATTTGTCAGCTCTTGCACGCGCCTTGAGTATAACACTGCCATGGTTGGCTAATTGCTAGCCACCTTACTAGTTAGGGCGTTAATAGCTAGCTAAGAGACAAAAGAGAACACAatcgaattgcaaaaatcactaactGAACGGATAAACTGAATTTAACAAGAATTATTAAAAAAAAGCTATAGGAATATGATTAATATACTGAGAATGATAAAACGAGTGACTTCGAGGCTAGTATGACTAGTCAGGCTGACAGGACGCTATGTATTAGGTAGGAAGTCGACGTTGTACAAAATATCTATggaactaataggagctggcagggtggGAAATAACCTCATAGGGCCTGTTTTTTCGTGATTACTTCAAAACTACGGCAAACTGCTCGGGAATATGGtcatattatgaaactgggctccacggCGGAGGCAATGAACTAGTTATCAGAAGAACAAAACAGTTAATGTCATGTGTCCAGCCTACGGTTGTCATTGGTTGTTTCTTTGCAGCTAGCTAAGCTAACATTAACTAAACATCGAACTTTTGTACATCGCTATATTCCGTACACTTTACCTTATTTTAGCGCtttaatacttccagatcaactgtaatatgaataccattgtaaagcacaatttctcccctttcaaGCAAAATCAATGACGAGACCTTCATGCTGCCCGCCTCTACATGATTGAAGATAGCAAAGGAGCTCCACcatgtctttttttaaatgtcgGGTGGGGAAGCGGAAAGCTATTGCGTGAAAGTCCTTCATTCCAAAACCTGAAGCCCCCTGTCCTCAGCAGGAAAGACCAGGAAAAAGTGTTGGCTTAAGGCTCGGTGGGTGACCGGTAACAATGATTCAACCAAGCTGTTCCAGGCCTGGAGTGGCACGCTGGAACTTCCAGAGGCTTGTAGACCTGAAGCAGTGTGATGTGATCCAGATCTGACATCCCTATTACCTCAACCACAGTCCTCACAGCTTAAGTCGTCTGCCCCTGCACCTGCTACACCAGCCACGACAGGTGATACAGATCTGCCACCCCCAGCAGTTCAGCTGCAGTCACAGCAGTCCTCTGCTGTGGTATTTCATTTACCGGCTGCACCAGTTCCTACTACACTGGCCATGAAGGGAGATACTATTGAGGAGACCCAGATGGATACAGATCTGCCATGCACTCCACCAGTGCCTGACAGACTCATCTCTGAGAAAACAGAGATGGGTGGCTGACAAGGAAaaataaaacacaacacacactctctctctctgtcatacacactcacacacattattCCCAGTGTAAATGAGTTGTATTTACTTGTTTATTTTATGTTTGCTCAATTTGATTTTAGGATTTGAGATATCTATTCCTACATATCCATTCTCAATATCTACATAATTACTCTAAATATCTATCAAATCAAAGTGTTATTGATATTGTAAAATACTTGCTTAATTTGTATAGTTTGAGGAAATTCTGTGTGCTTTTTAAAAACAtgcctccctctcacacacacattagacccaatgtaaatacattgtttattttATGTATGCTCCATTTTGTTTGAGGATTGTCAAATCAAAGTTTTTTTGTCacgtgtgctgaatacaacatgtgtaga
>TU1865779
tattttccgccattttcttcaaatctgaaagcaatgtgaagccacgcccatcttctgaagaattgcattatggtcCCTAAAGTCCTTCATTCCAAAACCTGAAGCCCCCTGTCCTCAGCAGGAAAGACCAGGAAAAAGTGTTGGCTTAAGGCTCGGTGGGTGACCGGTAACAATGATTCAACCAAGCTGTTCCAGGCCTGGAGTGGCACGCTGGAACTTCCAGAGGCTTGTAGACCTGAAGCAGTGTGATGTGATCCAGATCTGACATCCCTATTACCTCAACCACAGTCCTCACAGCTTAAGTCGTCTGCCCCTGCACCTGCTACACCAGCCACGACAGATCTGCCACCCCCAGCAGTTCAGCTGCAGTCACAGCAGTCCTCTGCTGTGGTATTTCATTTACCGGCTGCACCAGTTCCTACTACACTGGCCATGAAGGGAGATACTATTGAGGAGACCCAGATGGATACAGATCTGCCATGCACTCCACCAGTGCCTGACAGACTCATCTCTGAGAAAACAGAGATGGGTGGCTGACAAGGAAaaataaaacacaacacacactctctctctctgtcatacacactcacacacattattCCCAGTGTAAATGAGTTGTATTTACTTGTTTATTTTATGTTTGCTCAATTTGATTTTAGGATTTGAGATATCTATTCCTACATATCCATTCTCAATATCTACATAATTACTCTAAATATCTATCAAATCAAAGTGTTATTGATATTGTAAAATACTTGCTTAATTTGTATAGTTTGAGGAAATTCTGTGTGCTTTTTAAAAACAtgcctccctctcacacacacatt
>TU1865780
tggGAAATAACCTCATAGGGCCTGTTTTTTCGTGATTACTTCAAAACTACGGCAAACTGCTCGGGAATATGGtcatattatgaaactgggctccacggCGGAGGCAATGAACTAGTTATCAGAAGAACAAAAaaGCAAAATCAATGACGAGACCTTCATGCTGCCCGCCTCTACATGATTGAAGATAGCAAAGGAGCTCCACcatgtctttttttaaatgtcgGGTGGGGAAGCGGAAAGCTATTGCGTGAAAGTCCTTCATTCCAAAACCTGAAGCCCCCTGTCCTCAGCAGGAAAGACCAGGAAAAAGTGTTGGCTTAAGGCTCGGTGGGTGACCGGTAACAATGATTCAACCAAGCTGTTCCAGGCCTGGAGTGGCACGCTGGAACTTCCAGAGGCTTGTAGACCTGAAGCAGTGTGATGTGATCCAGATCTGACATCCCTATTACCTCAACCACAGTCCTCACAGCTTAAGTCGTCTGCCCCTGCACCTGCTACACCAGCCACGACAGATCTGCCACCCCCAGCAGTTCAGCTGCAGTCACAGCAGTCCTCTGCTGTGGTATTTCATTTACCGGCTGCACCAGTTCCTACTACACTGGCCATGAAGGGAGATACTATTGAGGAGACCCAGATGGATACAGATCTGCCATGCACTCCACCAGTGCCTGACAGACTCATCTCTGAGAAAACAGAGATGGGTGGCTGACAAGGAAaaataaaacacaacacacactctctctctctgtcatacacactcacacacattattCCCAGTGTAAATGAGTTGTATTTACTTGTTTATTTTATGTTTGCTCAATTTGATTTTAGGATTTGAGATATCTATTCCTACATATCCATTCTCAATATCTACATAATTACTCTAAATATCTATCAAATCAAAGTGTTATTGATATTGTAAAATACTTGCTTAATTTGTATAGTTTGAGGAAATTCTGTGTGCTTTTTAAAAACAtgcctccctctcacacacacatt
>TU1865781
TCCACACAACCGCTGCACTTTCATAGTTCACACTACTGTTAGTTAAACCATGGGAAGTTCTAGAACCTGCTAGAAGACTCATAGACGGTCCTCTGAGGAGTAAGACTTGACTCTGCTGCACCAGAAAGATCAGGTCTCCACCAGACCAGAGAAAGGGGCATAAATCTAGCCTGCCAGAGCTCGGTGGGTGACCGGTAACAATGATTCAACCAAGCTGTTCCAGGCCTGGAGTGGCACGCTGGAACTTCCAGAGGCTTGTAGACCTGAAGCAGTGTGATGTGATCCAGATCTGACATCCCTATTACCTCAACCACAGTCCTCACAGCTTAAGTCGTCTGCCCCTGCACCTGCTACACCAGCCACGACAGATCTGCCACCCCCAGCAGTTCAGCTGCAGTCACAGCAGTCCTCTGCTGTGGTATTTCATTTACCGGCTGCACCAGTTCCTACTACACTGGCCATGAAGGGAGATACTATTGAGGAGACCCAGATGGATACAGATCTGCCATGCACTCCACCAGTGCCTGACAGACTCATCTCTGAGAAAACAGAGATGGGTGGCTGACAAGGAAaaataaaacacaacacacactctctctctctgtcatacacactcacacacattattCCCAGTGTAAATGAGTTGTATTTACTTGTTTATTTTATGTTTGCTCAATTTGATTTTAGGATTTGAGATATCTATTCCTACATATCCATTCTCAATATCTACATAATTACTCTAAATATCTATCAAATCAAAGTGTTATTGATATTGTAAAATACTTGCTTAATTTGTATAGTTTGAGGAAATTCTGTGTGCTTTTTAAAAACAtgcctccctctcacacacacatt

Function

NR:

description
PREDICTED: uncharacterized protein LOC106578363 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469751.2 False 985 mRNA 0.42 6 45963081 45969782
XR_002469750.2 False 928 mRNA 0.42 6 45963081 45969843
XR_002469752.2 False 1896 mRNA 0.42 6 45963081 45972152
TU1865779 False 827 lncRNA 0.44 6 45963186 45969856
TU1865780 False 999 lncRNA 0.44 7 45963186 45971560
TU1865781 True 855 lncRNA 0.44 5 45963186 45983398

Neighbor

gene id symbol gene type direction distance location
LOC110497995 LOC106580785 coding downstream 67221 45871839 ~ 45895860 (-)
LOC110497994 LOC106583609 coding downstream 91549 45867770 ~ 45871532 (-)
LOC110497993 LOC106583710 coding downstream 145303 45795256 ~ 45817778 (-)
LOC118941361 NA coding downstream 173811 45786706 ~ 45789270 (-)
LOC110497990 LOC106581236 coding downstream 189036 45763857 ~ 45774045 (-)
LOC118941484 NA coding upstream 23870 45996022 ~ 46001745 (-)
LOC110498001 NA coding upstream 31914 46003765 ~ 46008718 (-)
LOC110498002 LOC106580335 coding upstream 41568 46013720 ~ 46016760 (-)
LOC110498003 LOC106580283 coding upstream 220578 46192730 ~ 46205374 (-)
LOC110498582 LOC106583554 coding upstream 236168 46208320 ~ 46209797 (-)
G1630661 NA non-coding downstream 5538 45957219 ~ 45957543 (-)
G1630645 NA non-coding downstream 25465 45937146 ~ 45937616 (-)
G1630642 NA non-coding downstream 26767 45931198 ~ 45936314 (-)
G1630623 NA non-coding downstream 55659 45906195 ~ 45907422 (-)
G1630596 NA non-coding downstream 101481 45860404 ~ 45861600 (-)
G1630677 NA non-coding upstream 39137 46011289 ~ 46011556 (-)
G1630746 NA non-coding upstream 124787 46096939 ~ 46097148 (-)
G1630776 NA non-coding upstream 176615 46148767 ~ 46149224 (-)
G1630782 NA non-coding upstream 183168 46155320 ~ 46155540 (-)
G1627068 NA other downstream 2553972 43408727 ~ 43409109 (-)
G1626324 NA other downstream 3124647 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 3321808 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 3492379 42465705 ~ 42480874 (-)
G1626105 NA other downstream 3707284 42255235 ~ 42255797 (-)
G1631005 NA other upstream 647055 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 858182 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 1944143 47916295 ~ 47980466 (-)
G1632228 NA other upstream 1996362 47968514 ~ 47970332 (-)

Expression


Co-expression Network