LOC110498001


Basic Information

Item Value
gene id LOC110498001
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46003765 ~ 46008718 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574525.2
GGAACAAGAAACGGTTGACTTTCGTTTCTGTTTGTGGGCTTGACGACAATCGACACGGAACTCGTTCCGGCCAGTTGTGACAACCAGCACCCTGTCGATCAAGTTTCCAATGCGGAATGCTTGTAATGTTCAATATGCGCACCGAGATGGATACAGACACACCCTAAATTGGAGCACCTAAGTTTCGTTTCCCAAAAAATCTAGGCACTGCATTATTTAACCCGGACCCAGTCTTTTCTCCTGCAGTCACTGATACAGTCACTGAGGAACCATGGAACTTCttactGTTATTGCGGTCACAGCAGGAGCAGGGGTAGCGGTGGTCATGGCTCCAGTTGCCCTAGGCGCTGTAGGGTTTACCGCCGCTGGCATCGCCGCAAACTCTGCAGCAGCCGGCATGATGGCATCTGCAGCCACTGCAAGTGGCGGTGGTGTGTTGGCTGGAAGCATCGTTGCCGTTCTGCAGTCGGCAGGTGCAGCAGGATTAGCTGGGTCTACAACTGCAGTGGTGGCTGGTGTTGGAGGAGCAGTGGGATGGCTCACCGCTACAGCAGCTGCACTCATCTGATGATCCAAATATTGATGATTGATAGCTGTCTTGGGACAGCTCTCGTCTAAGACAATTTTAATCACAAAGATCAcctctttaaatatatatatatattttatcctTTATTTAGGGATACATATAAACACTTGATAAGACGGTGAAGGAATGCTtagtgttaaaaaatatatattattgaaGTTCATATCCTCTATTGTGTGCAATGAAGGCAAATTATGACTGACTTGTTCTGTTTGGACATCTTGGTCAGCTGCACTTTCAAGCCCAGGGCTTTTTTATACCGTACTTTTTCATATTTCAGTTTAATACCTTCTTTATCTCAATCAAAGGTCAAGTGTTGCCAGATATAATGTAAACATTAGTCTGGTGTCTTTgtctctacatacagtatgtgtcagCTAGGGATGGAAATTAGTTTAGTCTTCGCAACAGGATGTTTTCCAATTGAGTGGCTTAGGCGGCTTTCTTCAAATCTGCACCTCACTGGTCTGTtgtacagtggtgtaaagtacttaagtaaaaaatgcTTTAAATACTAC
>TU1865759
CACCCTAAATTGGAGCACCTAAGTTTCGTTTCCCAAAAAATCTAGGCACTGCATTATTTAACCCGGACCCAGTCTTTTCTCCTGCAGTCACTGATACAGTCACTGAGGAACCATGGAACTTCttactGTTATTGCGGTCACAGCAGGAGCAGGGGTAGCGGTGGTCATGGCTCCAGTTGCCCTAGGCGCTGTAGGGTTTACCGCCGCTGGCATCGCCGCAAACTCTGCAGCAGCCGGCATGATGGCATCTGCAGCCACTGCAAGTGGCGGTGGTGTGTTGGCTGGAAGCATCGTTGCCGTTCTGCAGTCGGCAGGTGCAGCAGGATTAGCTGGGTCTACAACTGCAGTGGTGGCTGGTGTTGGAGGAGCAGTGGGATGGCTCACCGCTACAGCAGCTGCACTCATCTGATGATCCAAATATTGATGATTGATAGCTGTCTTGGGACAGCTCTCGTCTAAGACAATTTTAATCACAAAGATCAcctctttaaatatatatatatattttatcctTTATTTAGGGATACATATAAACACTTGATAAGACGGTGAAGGAATGCTtagtgttaaaaaatatatattattgaaGTTCATATCCTCTATTGTGTGCAATGAAGGCAAATTATGACTGACTTGTTCTGTTTGGACATCTTGGTCAGCTGCACTTTCAAGCCCAGGGCTTTTTTATACCGTACTTTTTCATATTTCAGTTTAATACCTTCTTTATCTCAATCAAAGGTCAAGTGTTGCCAGATATAATGTAAACATTAGTCTGGTGTCTTTgtctctacatacagtatgtgtcagCTAGGGATGGAAATTAGTTTAGTCTTCGCAACAGGATGTTTTCCAATTGAGTGGCTTAGGCGGCTTTCTTCAAATCTGCACCTCACTGGTCTGTtgtacagtggtgtaaagtacttaagtaaaaaatgcTTTAAATACTACTTAAgaagtttttgggggtatctttactttactatttgcCAACTTGTACttatacttcactacattcctaaagaaaacaatttactttttactccttacatatTCCTTGACACCAAAAGTgctcattacattttgacaggaaaatggtccaattcacacacttatcaagagaacctccctggtactccctactgcctctgatctggcgggctcactaaacacaaatgcttagtcagtaaattatgtctgagtgttggagtgtgcctctggctatcagtcattaaaaaaaactaaaaaataa
>TU1865762
GTCTGGTGTCTTTgtctctacatacagtatgtgtcagCTAGGGATGGAAATTAGTTTAGTCTTCGCAACAGGATGTTTTCCAATTGAGTTGATTAGGCTGATGTCTTCAAATCTGCACCTCACTGGTCTGTTGTAcattgcagtggtgtaaagtacttaagtaaaaaatactttaaatacTACTTAAGAAGTTTTTTGGAGTATCTgtaatttactatttatatttttgcgaacttgtacttttacttcactaaattccttgttacggatacaggtatcctgggGGTATTAGTAGGCGGCTTTCTTCAAATCTGTACCTCATTGGTCTGttgtgcagtggtgtaaagtacttaagtaaaaaatgcTTTGAATACTACTTAAGAAGTTTTTaggggtatctttactttactatttgcCAACTTGTACttatacttcactacattcctaaagaaaacaatttactttttactccttacatatTCCTTGACACCAAAAGTgctcattacattttgacaggaaaatggtccaattcacacacttatcaagagaacctccctggtactccctactgcctctgatctggcgggctcactaaacacaaatgcttagtcagtaaattatgtctgagtgttggagtgtgcctctggctatcagtcattaaaaaaaactaaaaaataa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574525.2 False 1107 mRNA 0.44 4 46004066 46006036
TU1865759 False 1249 TUCP 0.42 4 46003765 46005877
TU1865762 True 678 lncRNA 0.36 2 46003765 46008718

Neighbor

gene id symbol gene type direction distance location
LOC118941484 NA coding downstream 2321 45996022 ~ 46001745 (-)
LOC110498000 NA coding downstream 31914 45963081 ~ 45983398 (-)
LOC110497995 LOC106580785 coding downstream 108206 45871839 ~ 45895860 (-)
LOC110497994 LOC106583609 coding downstream 132534 45867770 ~ 45871532 (-)
LOC110497993 LOC106583710 coding downstream 186288 45795256 ~ 45817778 (-)
LOC110498002 LOC106580335 coding upstream 7684 46013720 ~ 46016760 (-)
LOC110498003 LOC106580283 coding upstream 186694 46192730 ~ 46205374 (-)
LOC110498582 LOC106583554 coding upstream 202284 46208320 ~ 46209797 (-)
LOC110498005 arhb coding upstream 327112 46333148 ~ 46415591 (-)
LOC110498006 LOC106579821 coding upstream 414692 46420728 ~ 46449566 (-)
G1630664 NA non-coding downstream 33405 45970191 ~ 45970661 (-)
G1630661 NA non-coding downstream 46523 45957219 ~ 45957543 (-)
G1630645 NA non-coding downstream 66450 45937146 ~ 45937616 (-)
G1630642 NA non-coding downstream 67752 45931198 ~ 45936314 (-)
G1630677 NA non-coding upstream 5253 46011289 ~ 46011556 (-)
G1630746 NA non-coding upstream 90903 46096939 ~ 46097148 (-)
G1630776 NA non-coding upstream 142731 46148767 ~ 46149224 (-)
G1630782 NA non-coding upstream 149284 46155320 ~ 46155540 (-)
G1630790 NA non-coding upstream 162762 46168798 ~ 46169074 (-)
G1627068 NA other downstream 2594957 43408727 ~ 43409109 (-)
G1626324 NA other downstream 3165632 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 3362793 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 3533364 42465705 ~ 42480874 (-)
G1626105 NA other downstream 3748269 42255235 ~ 42255797 (-)
G1631005 NA other upstream 613171 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 824298 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 1910259 47916295 ~ 47980466 (-)
G1632228 NA other upstream 1962478 47968514 ~ 47970332 (-)
LOC110498045 LOC106575475 other upstream 2105877 48111907 ~ 48147170 (-)

Expression


Co-expression Network