LOC110498002 (LOC106580335)


Basic Information

Item Value
gene id LOC110498002
gene name LOC106580335
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46013720 ~ 46016760 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574527.2
ATCCACGGTTGCAGATTGTGTGTGTCCGTGTAGTCACGCCCATAGGTGGAGTCTTCCACAATTTTGAGGCACGGTTGAAATACTCACACTTGTAGCCCTAGCCTTCTTTAATTTGTGCTCAGCAGCAGTGAGGTTAGTAGACCAGAGTGGGGAAACTTTTGTTGCTTCCCAAACGTAAAAGGGATCAACACGGATTTCAAAATCTGGCAAGATCTACCTATCTCTGGCTGGATTTAAAACCGTAAATCGTCTCGGTTTTTCTTTTAGATTTTCTTTTTGTTTAGGAAGCATAAAAGATGGGAGCTCAGTTTTCCAAGGGTGGAGTAGCTGTTGATGGAAAAGCCGTCGACGACCCAGCTGTCGCTAAAACTAATGGACAGGAGAATGGCCATGTTAAAACCAATGGAGATGTCTCTGCCAAGCCCGATGGGGACACAGCTCCCGTAGACGGGAATGGCACAGCCGAGCCAGCCAAAGAGGGCGAGACAGACTCCATCGAGGCTGCCCCTGCTGccgaaggagaggtggccaaggTCGACGGAGAGGCCGCCAAGGAtgccaagaagaagaagaagttctCCCTGAAGAACTCCTTCAAGTTCAAGGGCATCTCGCTCAAGAAGACCAAGAAGAGCAGCGAGGAGGAGGCCGCCTCCCCCACGGCGGAGGACAAGCCAGAGGAGAATGGCCACGCAGCAAAGGAGACGTCAGCCGCCGAGCCTGTGGCAGAGGCCAAGGAGGCCACCCCGGCCCCAGGGGGTGAGGCTGCAGCAGCAGAGGCCGCTCCCACAGAGGAAGCCCCTCCCACAGAGGAAGCCCCTACCGAGGAGGCCGCAGCCCCCGCAGAGGTCACGACACCCGCAGCATCTGAGACCGAGCCCAAGACAGAGTGACCGTGACTCGTCGCAGCTACTTGAACTGTTTTTCCAAGATTAAAGTATATAAATATATGAGACTCGTGCCACGTTCTTAAACTTATAAACAAAACTACAAACGAAGACAAATGAAGAAGGCTATATCACGTTTGCTGATTCAGCCACCAGTTCACTGCCTTTATCATTTCTCTACTGACGGAATCTCACTGGCCCTCTCACGAAAGTGTTGGCTTACAGCGCCCCCTCATGGTACACACTGGGACTGGCGTGTGGGGAAGGTATTGGATTGGATGTAGAATGAATCAGGAATACTGACTTATTTTCCCAATTCATGGAGAAGCATACTTTTAAACGCGTGGCAGTcctataacattttatttttctttctcatCTCTTGGGATTTAAAAATCGACAACGGTTATGGAGCAGGGCATACCACCTCCTTCTCTCGAAATGACTGTTATATGGACACAAACCTTTCAAATCATcatctaaaaaaaatatattctacATTACTATGTTTTACCCCCAAATTAAGTGTTTTGTGCTGTATAGAAAAACAAAATTCAAGGAGGGGGAAAGGAAATGTCTTCGTTCGTGCATTCTGGTTATTTTCTGGCTAAAACACATTTGAGCTTCTGAGTCTTGCGGTGTTCACATTTCAGAGTTTATGATGCAGATGTTGGGGTCGTGTACAAAAATGTGAGCTTTTTATCTGCAATTTGTCTCTGTAAATATGTTTTGGCCAATATTTTTGGTTCTCTTTATTTTGCTATCGTTTAAAGATGCTAATTGTTTTATTGTAACTTTTAACAAGGGTAAATAAATGTTTGATCCCCTATG

Function

NR:

description
MARCKS-related protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574527.2 True 1718 mRNA 0.47 2 46013720 46016760

Neighbor

gene id symbol gene type direction distance location
LOC110498001 NA coding downstream 7684 46003765 ~ 46008718 (-)
LOC118941484 NA coding downstream 11975 45996022 ~ 46001745 (-)
LOC110498000 NA coding downstream 41568 45963081 ~ 45983398 (-)
LOC110497995 LOC106580785 coding downstream 117860 45871839 ~ 45895860 (-)
LOC110497994 LOC106583609 coding downstream 142188 45867770 ~ 45871532 (-)
LOC110498003 LOC106580283 coding upstream 175970 46192730 ~ 46205374 (-)
LOC110498582 LOC106583554 coding upstream 191560 46208320 ~ 46209797 (-)
LOC110498005 arhb coding upstream 316388 46333148 ~ 46415591 (-)
LOC110498006 LOC106579821 coding upstream 403968 46420728 ~ 46449566 (-)
LOC110498008 LOC106579881 coding upstream 444997 46461757 ~ 46472164 (-)
G1630677 NA non-coding downstream 2164 46011289 ~ 46011556 (-)
G1630664 NA non-coding downstream 43059 45970191 ~ 45970661 (-)
G1630661 NA non-coding downstream 56177 45957219 ~ 45957543 (-)
G1630746 NA non-coding upstream 80179 46096939 ~ 46097148 (-)
G1630776 NA non-coding upstream 132007 46148767 ~ 46149224 (-)
G1630782 NA non-coding upstream 138560 46155320 ~ 46155540 (-)
G1630790 NA non-coding upstream 152038 46168798 ~ 46169074 (-)
G1630791 NA non-coding upstream 153359 46170119 ~ 46170486 (-)
G1627068 NA other downstream 2604611 43408727 ~ 43409109 (-)
G1626324 NA other downstream 3175286 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 3372447 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 3543018 42465705 ~ 42480874 (-)
G1631005 NA other upstream 602447 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 813574 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 1899535 47916295 ~ 47980466 (-)
G1632228 NA other upstream 1951754 47968514 ~ 47970332 (-)
LOC110498045 LOC106575475 other upstream 2095153 48111907 ~ 48147170 (-)

Expression


Co-expression Network