LOC110498003 (LOC106580283)


Basic Information

Item Value
gene id LOC110498003
gene name LOC106580283
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46192730 ~ 46205374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574528.2
GTAGTCCTAAAGAAATGCCCAAGAGCGTAGCTAGCTAATAGCTAACATAATTAATttggaaaataataataatacattttacatcAGCTATCTATCCTAAAACTGTATTTACTAGAAGAAGATACAAATTGAAAAACTGCATTTTACAAGCTTCTTCCTCATTCAGTGGGGTCAGAGTTCAGTAAATATTGGTGATGTCATGGTCTGAAGATGGCTGAAGGAGAAAGCTGTGACGGTTGGTGGGGAGGCTGGCTTCAACAAAGCTTCCAGGCCGTCAAAGATAAGTCATCAGAGGCATACGAATTTATAAAGCGTGACCTGACAGAGTTCTCCAACGTGGTGCAACATGACGCTGCGTGCTCCATCGTGGCCACAGCAAGCGCCGTTAGAAGCAAACTAGCGGTGGAGGGCTCCTCTGATACCACAGAGAAGGTGAAGAAGAGCCTATCCAGTTTCTTAGGAGTGATAACAGACACCCTCGCTCCTCCCCAGGACATGACCATCGACTGTGATGTCATCACGCTAGTGGCAACTCCAGCAGGCACCACAGAGGTGTATGACAGCACCAAGGCTCGTCTCTACAGTCTGCAGGCTGACCCTGCTACATACTGCAATGAGCCTGATGGTTCCCTAGAGCAGTTTGATGCGTGGCTCTCCAGCTTCAgcctggaggagaggaaaggagagatctCTGACCTCCTGGTCAACACCCCCTCTATCAGGGCCCTTTACACCAGAATGGTGCCAGCAGCTGTAGCCCATTCTGAATTCTGGCAGCGGTATTTCTACAAAGTCTTTCAGTTGGACCAGGAGGAGGCCAGGCGAGTGGCCTTGaagcagagagcagagcagacttCCCACACAGAGGCTCtgggctgggaggaggaggatgaagATGACTTCCTTGGCGCCACGTCTTCATCTCGCCTGGACTTCACGCCCCCATTGGACAACCCTGCTACCCAGCTGTCCCCACTTACACCAGTCACAATGGCGACGACCCCACTCAGCCCCATCCCGTCTCCAAGCGGGGAgcgctcctctcccctctccctgagCAGCGACAGCGGCAGCCTGCCCACCCAGGTGGAGGTGAGACCAGCCAGGCCACAGCCTGCAGTCGTGGAGCTGTCCCAGAAACTCAACAAGGCCAGCCTGGAGGAGAAAGAGCCAGAggggcagcaggaggaggagaatagggtTCAGTTAGAGGCCCCAGCCCAGCCTGAGCCCACAGAGAAGGCTACAGCTGAGAGAATAACAGTCCAGGCCCCAGCTACCACAGTTCAGGCCCCAGCTACCACCATCAGACCAGAGACCGAGGGGCCCCAGGACCTGAGGGTGTTTGAGCTCAACTCTGACAGCGGGAAGTCTACACCTTCAAACAATGGCAAGAAAGGGTCCAGCACAGATGTCAGTGAGGACTGGGAGAAGGACTTTGACCTGGACATGACAGAAGACGAGGTCCAGATGGTGCTCTCTAGAGTTGAGGCTACAGGAGAGcTGGAGGAGGACTGGGAAAACTGGAACTGATGATTGCTGTGGCGTACTGTTTCTATCCCGCCATTAAAGCGAGTTCTCGGCAGACGAACCATGCTTAACGTGTTTTACCTCTGTCCACGCCGTCACCGTGTCACGTTTGTTCGTAGGGGAATGTCCCTTTGGTTTGGACCATGTTGCTGAAGGCGCTAGCATAGCAATGGCAATCCAAGACAATACGATTAGAGCCAAGGCACCATCAGCTGTCAGTTTGTGCACATAGGTTTCAAAGCTGATTTACTCAGTCTTTTTGGTTATTTCTTGAAAGCTGCTGCTCCCTCTATCTTCTGAAATGCCATTAAGTACATGTAAATTGTTGCTAGTGAACTTCTTCAAAGTTATGAGTGGCGGGAATTATGACTTCACTTTAGGCTGAAGAATAGCCATTAAATTGTAACGCTGCGTATCACCTTTCATGAGATGAAATTCGTCATGTGATTTATTGAATGGTGAATATATTGATTTAAACTTTAAAAAAAGAAACTAACTCGTCTATCTTATGCAAGTGAATATTCATAAGGGAACCTATTTTGGCCTTTATAGGGAGCATTCATTTTGGATTCACTCCCAACCTTAGATACATATGACCTTGACAGACGAGCGATAGTGTGGACAAGATATCCAAAATGTTTTGTCACACACTTGCCATTCTGTCTGTTTTCATCCCTGCCCTGCTAAGTAATTGACATGAACATATCAGCTCTTCTGTGACCTCCATGGGCCACGTTTCCGCTTTATTTCCTGTCTCTGCTACAATAATCTATTATTCGATCAGTCCACGTCTAATATTATTCTGGATGGGTAAAGGTCTCATTTATTGTCAAAAGAGAAGATGATAATGACGCAATAAAGAGGCTGCAAAATGTTTCAGGTGTCATGGTGCCAGAGTATTGGGCTTGGATGTCTGAGGAGGTATGGCCTGTTGTCATGTTATTTCTGATGTTAAATAATTAATGAGATCCCACAGCCTGCTTAGTATGGACATATATACTGCACAATAGCTCTGAGTATGGAGTTGCAGAGAGCCAAGAGGAAATGAGGGCTTTGTCTGCTTGATTTATTTAACAATACAGTATAGACTAGCTTCATTCTGCAGTATCGCTTCATACTATTCTGCTATTTTATTGTCATAATTGTCTTCATCAGTGTAAACTGTGGCCAAGACTCAAAGCATAAAGATTTAGTGTATAGATCTCTACAATTACTGCTTTTCATGTGAATGTTATTTTTCTGAGCATTGTTTTGCATGTCAGTGCAATCACTTATGCAAACTGTTGTACAGCAGGTGTACTGTTTTAAGTTGTAAGGTCGCTTACTAGCTTGTAGTTGCTAAAGGAATGACCTGTTTATAATGAATTGATTGATATGTTGCATGTCTCAAGttatctatgtatttcacattaATACATATATTTGCACTTTAAACAATACGTttaaagctgttcattttaggcAATTACATTTTCCTCTATTTTTCAAATGATCATTGTCATTAAAAAGAGTCTCATGT

Function

NR:

description
BSD domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574528.2 True 3049 mRNA 0.46 11 46192730 46205374

Neighbor

gene id symbol gene type direction distance location
LOC110498002 LOC106580335 coding downstream 175970 46013720 ~ 46016760 (-)
LOC110498001 NA coding downstream 186694 46003765 ~ 46008718 (-)
LOC118941484 NA coding downstream 190985 45996022 ~ 46001745 (-)
LOC110498000 NA coding downstream 220578 45963081 ~ 45983398 (-)
LOC110497995 LOC106580785 coding downstream 296870 45871839 ~ 45895860 (-)
LOC110498582 LOC106583554 coding upstream 2946 46208320 ~ 46209797 (-)
LOC110498005 arhb coding upstream 127774 46333148 ~ 46415591 (-)
LOC110498006 LOC106579821 coding upstream 215354 46420728 ~ 46449566 (-)
LOC110498008 LOC106579881 coding upstream 256383 46461757 ~ 46472164 (-)
mgst3b LOC106579764 coding upstream 273349 46478723 ~ 46481326 (-)
G1630800 NA non-coding downstream 1415 46190704 ~ 46191315 (-)
G1630793 NA non-coding downstream 19905 46172566 ~ 46172825 (-)
G1630791 NA non-coding downstream 22244 46170119 ~ 46170486 (-)
G1630790 NA non-coding downstream 23656 46168798 ~ 46169074 (-)
G1630782 NA non-coding downstream 37190 46155320 ~ 46155540 (-)
G1630820 NA non-coding upstream 19645 46225019 ~ 46225260 (-)
G1630825 NA non-coding upstream 28957 46234331 ~ 46234882 (-)
G1630857 NA non-coding upstream 88775 46294149 ~ 46294426 (-)
G1630891 NA non-coding upstream 212479 46417853 ~ 46418136 (-)
G1627068 NA other downstream 2783621 43408727 ~ 43409109 (-)
G1626324 NA other downstream 3354296 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 3551457 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 3722028 42465705 ~ 42480874 (-)
G1631005 NA other upstream 413833 46619207 ~ 46629506 (-)
G1631120 LOC106612182 other upstream 624960 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 1710921 47916295 ~ 47980466 (-)
G1632228 NA other upstream 1763140 47968514 ~ 47970332 (-)
LOC110498045 LOC106575475 other upstream 1906539 48111907 ~ 48147170 (-)

Expression


Co-expression Network