LOC110498006 (LOC106579821)


Basic Information

Item Value
gene id LOC110498006
gene name LOC106579821
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46420728 ~ 46449566 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574534.2
CATAACCTGACAGACGTAAATTATAGCGCAAGCTTGCGCTGGGAGAAAAGAGGAGGTTCTTAAAGAGAGTTTTATTTATGTTTATGAAAAATAATTACAGCGATATTTCACAGGGACCTAATTTATTGTATTTGTCTTCTCATGCAAGAAAACTGGATAAGATTACAGTAGGAAATCAAAAACTAaagcgaaggagaggaggatgaagcgGCGCAATGCGGACTGCAGCAAACTCCGACGGCCGTTAAAACGGAACCGAATCACCGAGGGCATATACGGCAGtaCCTTCCTGTACCTGAAGTTCCTTGTGGTGTGGGCTCTGGTGCTGTTGGCAGACTTTGTGCTCGAGTTCAGATTTGAGTACCTGTGGCCTTTCTGGCTCTTCATCAGAAGTGTGTACGACTCCTTCAGATACCAGGGGCTGGCATTCTCAgtgttctttgtgtgtgtggcGTTTACCTCTGACACCATATGCCTGCTCTTCATCCCAGTACAATGGCTGTTCTTCGCTGCCAGTACCTATGTGTGGGTGCAGTACGTGTGGCACACAGAGAGGGGGGTCTGTCTCCCCACAGTGTCCCTTTGGATACTCTTTGTGTACATAGAGGCAGCCATCAGATTCAAAGACCTGAAGAACTTCTTCCATGTCGACTTGTGTCGCCCATTCGCTTCACATTGCATTGGCTACCCAGTGGTGACGCTGGGCTTTGGATTCAACAGCTACGTCAGCTATAAGATGCGCTTAAGAAGGCAGGAGGTGGTGCAGAAGGAGAACGAGTTTTACATGCAGCTCTTGCTGCAGGCCCTGCCACCAGAGCAACAGATGCTCCAGAGACAGGAAAGGGAGGCAGAGGAAGCTGCATTAGCTAAAGGGATATCTGAGATAGACTCCATCCCAGTCTCACAGAATGGCGCCCCCGCCAGTAAAAAAATGGCAGCTATGCTGGCGGAGCTGGAGTACAGAGATAAAGGGAAAGAGGGCCGCGAGGCCAAAAAGCAACACAACAGCATCCAGCCGTCATCGGTAGACTCTAAACTCCAGGAGATGGAGTACATGGAGAACCATATGAACAATAAGAGACTCACCACAGAGCTGGTGGGCAGCACAGAGAACCTGCTGCTGAAGGAGGAGAACTCCTCATCCTCGAAAAACTACAAGAACTCCAGCAGAAACGTGGCAGTCAACTCCTTGCCCTGCAGACACTGCGCCACCAACGGCAGTGTCCTATCAGCCCCTTCCTCCTTTTCCTGGGGGAAGAAGCAGAAGTGTGCAGTGGGGAAGGGTCCAGCAGTAGGCTCTCACAGGGATCCAACAGACAACTGCATCCCTAACAATCAGCTAAGCAAGCCTGAGGCGATTGTACGGCTGGAGCAGGATGTGAAGAAGCTGAAGGCAGACCTTCAGGCCAGCAGACAGGTGGAGCAGGACCTGCGCAGTCAGATCGGCTCCCTTGGCAGCGCTGAGCGCTCCATCCGCTCTGAACTGGGCCAGCTGCGCCAGGAGAACGAGCTGCTGCAGAACAAaCTCCATAACACCATCCAGGCCAAGCAGAAGGACAAGCAGACCATGGGCCAGCTGGAAAAGAGGCTGAAAGTTGAGCAGGAGGGCCACGCCAACGCAGAGAAACAACTTGCAGATGAGAAGAAACGCAAGAAGCTGGAGGATGCCACCGCAGCCAGAACCGTCGCACTAGCAGCCGCATCCAGGGGGGAGTGCACAGATACAATGAGGAGGCGGGTCACGGAGCTGGAGACGGAGTGTAAGAAACTAACCATGGACATCAAGCTCAAAGAAGACcagctcagagagctggagatgACCGTGCAGgagctCCAGAAGTACAAGGAGAATGAGAAGGACACAGAAGTGCTGATGTCAGCGCTGTCGGCCATGCAGGAAAAGACCCAGCACCTGGAGAACAGCCTGTCTGCAGAGACCCGCATCAAACTGGACCTGTTCTCAGCACTGGGTGATGCCAAGAGACAGCTGGAGATCGCACAAGGTCAGATCCTGCAGAAGGACCAGGAGATCAAGGACCTGAAGCAGAAGATAGCTGAGGTGATGGCTGTCATGCCCAGCATCTCCTACACATCTGACAGCAGCAACATGACTCCCATGGCCCCCCACTACTCCTCCAAGTTCATGGACACAAGTCCCTCTGGCTTGGACCCAAATGCCTCCATCTACCAGCCACTCAAAAAGTGAACGCTTCCTCCAACCCGtcattctcttttttttttttcttttttttaagccGACCTCCAGATCTGCTTGGAAGGGGTCTGGGACTTGTTTTTCCTTGTCAGATCCGAAATATGTTGTATTGTGACTATTTATTGTAGTTTTTATTTTAGAAGACTAAGGGACATCACATGTAAACCAGTTTTTTATTTTGGTAAATGTCTAGTGAAACCTTACAGAATTGGGCTTATGTAGGATGTTTCAGTTCCCCCTTCTACTCCACCTGTTACTTGGTCTCTGGTCTTGGTTAATTCTGGtgttggttttattaatttaaaaTCTGTGATGTGGATCTCTGCTAGCAGGAGTGCTCACCCATATTTCCATGTTGGAAGTTCTGATTGCTGAGGGCGGATACCCTTTTGTTTATATGGTAGGACTCTACACTCTGTACATTGGTATGGACTCTAGCCCTGTTTTGTCAATGGTATTTTTCAGTCGTGAATATCAGACCAAATTGAACGTTCCATTGGCTGTTCTTGGGGTTTTGTGGTATTGGTTCTATTATGTTTGAAAGTGGATTGTGTGGTCTCCTATTTACTTGTTGATCTTACCACAAAGTTGAATAAAAAAAATCACTGGGATGAGAATAGAGCTGTACCAAGATGTTATGTTAGAATAACAAGGGATAAACTACTGTCAACGTAAACCATCCTCAACAACTCCAAATGTTGAGTATCATCTACAAAATTAAATGTATTTCCCAAAAAGCACCCTAATTTCTACAATACTTTCCAAAAGTGTTAAGCAAAGGCTGTATTAAGAGAATTAATGATATGCCTTCTCTTTAAGCTCAATAGTCTTTCGCAACTTGTCATGATCACAGGGCCTTGATTCAGAACCTCAGTGGTGGGAGTTAGTAGCCTGCTATGCTAGAAAGGACTGAAGTACAGGGCTTTCCAACCACATACAATTATAACCTGGACCCTAACTATAGGTTCAGAAAAGATAGCCCACCTACAATCTCAACAGTTCTGACAATATGGCCACTCATGGTCTAATATGGTAACGTTACTACGAAGTCTACTCCAAACAGGCTCCCAGCATGGGAGTCTACTGCATCCAACTATAACACATCTCTCTACTGGAAACTCCTGTTTAACTATTGTCCCTACTTATGTTTTTATTGTTTTGACTTAATTGCACGGTTAAAATTCCACCGTTGATGGATGTTGTGtgtctctctgacctgtgtgtgtgtaagttacAAGAAACAAGAAATAAGGCTCTGGAAATGAACGTTACTTTTTTTCACAGAATTCTGCATGATAAATCTCCTTTTATTGCAGAATACTCAACTTCAGCCCATTTGCCAAGAAAGGATTGATTGTTTTCTAGGAATATACTGCAAAGACATTGGTTGACGTGTTTGACATTCATTCTCCTCTGACTTGTCTAAAGTATGTCAAGCAGGTGGGAAAACTGCTCACCTGTTTGTAGTAGACTGTTTACGTAGTTGAAAGCTTTGTAAATGTTACAGTATTGGCTACTGCCTGGGACATAGGTGTTAAGAACAGTCAACAATTTCTTTGGTattgttttttacatttgatttaaCCTTCATCATTCCCGTCATTTTCCTTCCCTGCATGGAGGAATAGCTTGAGCCTGATGTGGTTTGCTGTCATCTGAAATGGTAATTTGTGTGGTTATAACCTACTGTATATGGAAACTTTTTCTACAGATTAGTTTAGTCAATTGGTCCTTCAACTGATGTTGAAAgtataaaaacatgtatttatttttaattatgCCCAGTCATTGCTCTGTTTCTCCCCAAGTCTGACCTCGGCTAGGCTCGAACACTGAGGTTTACAAGGAATAAATTATTTTCTTGCAGATGTT
>TU1865811
ACAGAATTGGGCTTATGTAGGATGTTTCAGTTCCCCCTTCTACTCCACCTGTTACTTGGTCTCTGGTCTTGGTTAATTCTGGtgttggttttattaatttaaaaTCTGTGATGTGGATCTCTGCTAGCAGGAGTGCTCACCCATATTTCCATGTTGGAAGTTCTGATTGCTGAGGGCGGATACCCTTTTGTTTATATGGTAGGACTCTACACTCTGTACATTGGTATGGACTCTAGCCCTGTTTTGTCAATGGTATTTTTCAGTCGTGAATATCAGACCAAATTGAACGTTCCATTGGCTGTTCTTGGGGTTTTGTGGTATTGGTTCTATTATGTTTGAAAGTGGATTGTGTGGTCTCCTATTTACTTGTTGATCTTACCACAAAGTTGAATAAAAAAAATCACTGGGATGAGAATAGAGCTGTACCAAGATGTTATGTTAGAATAACAAGGGATAAACTACTGTCAACGTAAACCATCCTCAACAAAATTAAATGTATTTCCCAAAAAGCACCCTAATTTCTACAATACTTTCCAAAAGTGTTAAGCAAAGGCTGTATTAAGAGAATTAATGATATGCCTTCTCTTTAAGCTCAATAGTCTTTCGCAACTTGTCATGATCACAGGGCCTTGATTCAGAACCTCAGTGGTGGGAGTTAGTAGCCTGCTATGCTAGAAAGGACTGAAGTACAGGGCTTTCCAACCACATACAATTATAACCTGGACCCTAACTATAGGTTCAGAAAAGATAGCCCACCTACAATCTCAACAGTTCTGACAATATGGCCACTCATGGTCTAATATGGTAACGTTACTACGAAGTCTACTCCAAACAGGCTCCCAGCATGGGAGTCTACTGCATCCAACTATAACACATCTCTCTACTGGAAACTCCTGTTTAACTATTGTCCCTACTTATGTTTTTATTGTTTTGACTTAATTGCACGGTTAAAATTCCACCGTTGATGGATGTTGTGtgtctctctgacctgtgtgtgtgtaagttacAAGAAACAAGAAATAAGGCTCTGGAAATGAACGTTACTTTTTTTCACAGAATTCTGCATGATAAATCTCCTTTTATTGCAGAATACTCAACTTCAGCCCATTTGCCAAGAAAGGATTGATTGTTTTCTAGGAATATACTGCAAAGACATTGGTTGACGTGTTTGACATTCATTCTCCTCTGACTTGTCTAAAGTATGTCAAGCAGGTGGGAAAACTGCTCACCTGTTTGTAGTAGACTGTTTACGTAGTTGAAAGCTTTGTAAATGTTACAGTATTGGCTACTGCCTGGGACATAGGTGTTAAGAACAGTCAACAATTTCTTTGGTattgttttttacatttgatttaaCCTTCATCATTCCCGTCATTTTCCTTCCCTGCATGGAGGAATAGCTTGAGCCTGATGTGGTTTGCTGTCATCTGAAATGGTAATTTGTGTGGTTATAACCTACTGTATATGGAAACTTTTTCTACAGATTAGTTTAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574534.2 False 4087 mRNA 0.46 11 46420728 46449566
TU1865811 True 1496 lncRNA 0.39 2 46420876 46422397

Neighbor

gene id symbol gene type direction distance location
LOC110498005 arhb coding downstream 5137 46333148 ~ 46415591 (-)
LOC110498582 LOC106583554 coding downstream 210931 46208320 ~ 46209797 (-)
LOC110498003 LOC106580283 coding downstream 215354 46192730 ~ 46205374 (-)
LOC110498002 LOC106580335 coding downstream 403968 46013720 ~ 46016760 (-)
LOC110498001 NA coding downstream 414692 46003765 ~ 46008718 (-)
LOC110498008 LOC106579881 coding upstream 12191 46461757 ~ 46472164 (-)
mgst3b LOC106579764 coding upstream 29157 46478723 ~ 46481326 (-)
syf2 syf2 coding upstream 48224 46497790 ~ 46505960 (-)
LOC110498013 clic4 coding upstream 302456 46752022 ~ 46781884 (-)
srrm1 srrm1 coding upstream 340166 46789732 ~ 46803061 (-)
G1630891 NA non-coding downstream 2592 46417853 ~ 46418136 (-)
G1630857 NA non-coding downstream 126302 46294149 ~ 46294426 (-)
G1630825 NA non-coding downstream 185846 46234331 ~ 46234882 (-)
G1630820 NA non-coding downstream 195468 46225019 ~ 46225260 (-)
G1630800 NA non-coding downstream 229413 46190704 ~ 46191315 (-)
G1630901 NA non-coding upstream 5617 46455183 ~ 46455704 (-)
G1630906 NA non-coding upstream 15729 46465295 ~ 46466179 (-)
G1630910 NA non-coding upstream 23240 46472806 ~ 46473024 (-)
G1630985 NA non-coding upstream 137391 46586957 ~ 46587490 (-)
G1631005 NA non-coding upstream 171004 46619207 ~ 46629506 (-)
G1627068 NA other downstream 3011619 43408727 ~ 43409109 (-)
G1626324 NA other downstream 3582294 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 3779455 42640449 ~ 42641273 (-)
LOC110498355 atg2b other downstream 3950026 42465705 ~ 42480874 (-)
G1631120 LOC106612182 other upstream 380768 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 1466729 47916295 ~ 47980466 (-)
G1632228 NA other upstream 1518948 47968514 ~ 47970332 (-)
LOC110498045 LOC106575475 other upstream 1662347 48111907 ~ 48147170 (-)
G1630693 NA non-coding upstream 6163 46428560 ~ 46428833 (-)
G1630691 NA non-coding upstream 6775 46429172 ~ 46431432 (-)

Expression


Co-expression Network