LOC110498016 (LOC106579056)


Basic Information

Item Value
gene id LOC110498016
gene name LOC106579056
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46803721 ~ 46808821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574549.2
GCATTATGGGTTttgtcagttttttttaaatcccctCTCTGACTCTGACGTAAGCCTCTACACTGCAGCCCTGTTCAACATTACAACAATACAAATCCCCTGTGAGCAGGTAGTCAGCATGTTTGCCCACTTGTTGGCCCTATAGCGTAGCAGGCTGGATATTGTAGTAATTTACAATTGAGTCGTGACCTCTCGCGTTCTTACATCATAACGAGGAAAACCACGTATCCCAGCATGACTTTCTTCAGCCATTTAGTTACCCAATGGATGCTCGGTGCGCTTATTCAGTGACCAATCGGGGGGTAGCCTAATCTTTTAATTCTAAGAGTTAAATACCACGAAAAACGTTTTATCAGCGCAATTTACATCAATTAGTTTATTAGCCTAGTGTGGGAAGCGCTTGTGCGATCTGTAAAGCTTCATTTTGGTCAACAAGTGGTTGGCACGATCAACAGAGACAGATTCCAGGTTTTTGTCAGCACACAGGGGCAGCAGCTCGACATGCTATCGGGTATGCGGGTCTGTGTGCCCTCCGCTGCAGCTCTATTCGGCTCGTTGTGCCATGGCTGTCGCAGCTGGGCACGTAGTTTGTCATTCCGGGGTTTTAGTTGGTCGCCCCGAAAGATCAGCCGGTGGAACAGTCAAGATTCCATTGACCTACCTCCTGCGGAGAACCCACGAATTCTCATCACAGGTGGCCTTGGACAGTTAGGTGTGGGGCTTGCAGAAATCCTGAGGAAACAGTACGGAACAGAAAACGTTATCCTATCGGATATCAAGAAGCCTCCACCAGAAGTGTGCAGAAGTGgcCCGTTTGTGTATGCTGACGTGTTGGACTTTAAGAACCTCAGAGAGTTGGTGGTGAATAACCGCATCACCTGGCTGGTGCATTACAGCGCTCTACTCAGTGTTGTGGGAGAGGCAAATGTGGCCCTGGCACGCAAGATCAATATCACAGGGCTTCATAATGTGCTGGACCTGGCTCTGGAGAGCTGTTTACGTCTCTTTGTCCCCAGCACCATCGGAGCCTTTGGCCCTTCTTCTCCCCGTGACCCTGCACCTGACCTGTGTGTCCAGAGGCCTCGCACCATTTATGGGGTGTCCAAAGTGCATGGCGAACTGATGGGGGAGTATCTTCATCACAAGTATGGACTGGACTTCCGCTGCCTACGCTATCCTGGCGTCATCTCAGCTAACACACAGCCTGGGGGAGGAACAACAGACTATGCTGTCCAGATTTTTCACGATGCCCTCAGCACGGGTCACCACGAGTGCTATTTACGCGCTGACACGCGTCTGCCAATGATGCATGTTGGTGACTGCCACCGTGCGACTGTGGAGTTCATGCAGGCCCCAGAATGCCAGCTGTCGCTGCGCACATACAACATCGATGCCATGAGCTTCACCCCTGAGGAAGTGGCCACGGAAATCCGCAAGCACCTGCCCCACCTCAAGGTCACCTATAACCCTGACTCTGTCCGCCAGACAATTGCGGACAGCTGGCCGGTGAGGTTTGATGACTCCAACGCACGGAGAGATTGGGGCTGGAAGTCGACATATGGGCTTGAGGAGCTCGTCTCAGACATGCTGAGCTCCATCCGTGACAAGAGGACCAACGCCGGACTGCCAGTCAGCTAGCAGGTCCCGCCCACAGAGAGTGACTTACCAATCACTATTCCCTTAAGTCCGCTTCAGCCTGGGTCTGCCTATCACAACAGACCCTCTTTCCTTAGCATCATCTCCAAACCAGGACTCTTCTGTAGATCAGGATAATATTACACCAATAAACCAGGGACTATTTTCAAACCTGTCATCTTCAGCCAGAACCACTCAACTTTCCACAACAGTGGACATTGacaccacagatacacacacacacacacacacacaccgcaccctCTCATAATAGCAGCTTTACTCTTTTCAGGGAACCATACTGTCAACCATTCTCTTATGTTGTGACTGTCTTCCGTTTCTGTTTTAAATGTGATAGAGAATTTTAATATCATAGCAGGTTTAACATAGGCCTTACACGTCTGGGGGAAATAGGCTTCAGGCAAATTATTTTACATATAGTTAGTCATAACCCTACCTTCAGTTTCCAGTATCTCAAGGGGtttcatttacattttacatttacagtacgtcatttagcagacagtcttatccagagcgatttacagttagtgcattcatcttaacatAGCTAGgggagacaaccacatatcacagtcatagtaagtacatttttccttaATAAAGAAGTTATCAGCAAAGTTAGTGCTAAAAGGAAATGTTCCTCCTTGCCTGCTGTATTAGGGTAGTATAGAGGGCACAGTGATTTCCTTCCTGGCCTGTTGCGTTAGGGTAATATAGAGGGAACAGTGAAATGACACAGGAGCAGTGAGAGATATAGGGACAACTATCAGAAGAAATATAAAATCCACAATGTTTACAAAAGGCCTGCCTTTACAACACAACTTCAGTACATTTTCAAACATCTCCACATTTCTTTACAGTCAGTGTGATTTTGGGTACCAAATAAATTCAGAATTGAAGCCTTATTTTTAATTGACAACTAATTAGAAATATATTTGTGAGTAATGAACAAAATTGCAGTGTACTTTTGATCATAAATTGAATAAATCTCTTAATTTGCTCATTCTGTTGTTTTGTTATT
>TU1866209
CTGAGCTCCATCCGTGACAAGAGGACCAACGCCGGACTGCCAGTCAGCTAGCAGGTCCCGCCCACAGAGAGTGACTTACCAATCACTATTCCCTTAAGTCCGCTTCAGCCTGGGTCTGCCTATCACAACAGACCCTCTTTCCTTAGCATCATCTCCAAACCAGGACTCTTCTGTAGATCAGGATAATATTACACCAATAAACCAGGGACTATTTTCAAACCTGTCATCTTCAGCCAGAACCACTCAACTTTCCACAACAGTGGACATTGacaccacagatacacacacacacacacacacacaccgcaccctCTCATAATAGCAGCTTTACTCTTTTCAGGGAACCATACTGTCAACCATTCTCTTATGTTGTGACTGTCTTCCGTTTCTGTTTTAAATGTGATAGAGAATTTTAATATCATAGCAGGTTTAACATAGGCCTTACACGTCTGGGGGAAATAGGCTTCAGGCAAATTATTTTACATATAGTTAGTCATAACCCTACCTTCAGTTTCCAGTATCTCAAGGGGtttcatttacattttacatttacagtacgtcatttagcagacagtcttatccagagcgatttacagttagtgcattcatcttaacatAGCTAGgggagacaaccacatatcacagtcatagtaagtacatttttccttaATAAAGAAGTTATCAGCAAAGTTAGTGCTAAAAGGAAATGTTCCTCCTTGCCTGCTGTATTAGGGTAGTATAGAGGGCACAGTGATTTCCTTCCTGGCCTGTTGCGTTAGGGTAATATAGAGGGAACAGTGAAATGACACAGGAGCAGTGAGAGATATAGGGACAACTATCAGAAGAAATATAAAATCCACAATGTTTACAAAAGGCCTGCCTTTACAACACAACTTCAGTACATTTTCAAACATCTCCACATTTCTTTACAGTCAGTGTGATTTTGGGTACCAAATAAATTCAGAATTGAAGCCTTATTTTTAATTGACAACTAATTAGAAATATATTTGTGAGTAATGAACAAAATTGCAGT

Function

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0050662 obsolete coenzyme binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574549.2 False 2680 mRNA 0.46 9 46803721 46808821
TU1866209 True 1033 lncRNA 0.40 1 46803781 46804813

Neighbor

gene id symbol gene type direction distance location
srrm1 srrm1 coding downstream 660 46789732 ~ 46803061 (-)
LOC110498013 clic4 coding downstream 21837 46752022 ~ 46781884 (-)
syf2 syf2 coding downstream 297761 46497790 ~ 46505960 (-)
mgst3b LOC106579764 coding downstream 322395 46478723 ~ 46481326 (-)
LOC110498008 LOC106579881 coding downstream 331557 46461757 ~ 46472164 (-)
zgc:154055 LOC106578739 coding upstream 139 46808960 ~ 46818244 (-)
tmem54a tmem54 coding upstream 49338 46858159 ~ 46871021 (-)
LOC110498025 LOC106578367 coding upstream 123325 46932146 ~ 46935706 (-)
zbtb8a zbtb8a coding upstream 127505 46936326 ~ 46940595 (-)
gale gale coding upstream 132452 46941273 ~ 46946804 (-)
G1631094 NA non-coding downstream 53984 46749155 ~ 46749737 (-)
G1631086 NA non-coding downstream 66412 46737093 ~ 46737309 (-)
G1631066 NA non-coding downstream 85058 46717028 ~ 46718663 (-)
G1631005 NA non-coding downstream 179793 46619207 ~ 46629506 (-)
G1631118 NA non-coding upstream 19139 46827960 ~ 46828466 (-)
G1631121 NA non-coding upstream 61854 46870675 ~ 46880032 (-)
G1631205 NA non-coding upstream 192353 47001174 ~ 47001607 (-)
G1631206 NA non-coding upstream 196863 47005684 ~ 47005895 (-)
G1631213 NA non-coding upstream 233171 47041992 ~ 47042209 (-)
LOC110498001 NA other downstream 797844 46003765 ~ 46008718 (-)
G1627068 NA other downstream 3394612 43408727 ~ 43409109 (-)
G1626324 NA other downstream 3965287 42759294 ~ 42838434 (-)
G1626232 LOC106611303 other downstream 4162448 42640449 ~ 42641273 (-)
G1631120 LOC106612182 other upstream 21513 46830334 ~ 46830650 (-)
G1632192 LOC106575636 other upstream 1107474 47916295 ~ 47980466 (-)
G1632228 NA other upstream 1159693 47968514 ~ 47970332 (-)
LOC110498045 LOC106575475 other upstream 1303092 48111907 ~ 48147170 (-)
LOC110498375 dlgap2 other upstream 2086709 48812312 ~ 48896302 (-)

Expression


Co-expression Network