Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110498019 |
| gene name | hdac1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 46849573 ~ 46858039 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| hdac1 | Enables transcription corepressor activity. Involved in negative regulation of transcription by RNA polymerase II. Acts upstream of or within with a positive effect on secondary heart field specification. Acts upstream of or within several processes, including animal organ development; determination of dorsal identity; and nervous system development. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex. Is expressed in immature eye; nervous system; pectoral fin; and pharyngeal arch. Orthologous to human HDAC1 (histone deacetylase 1). |
| description |
|---|
| histone deacetylase 1 |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0070932 | histone H3 deacetylation | biological_process |
| GO:0070933 | histone H4 deacetylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0032041 | NAD-dependent histone deacetylase activity (H3-K14 specific) | molecular_function |
| GO:0097372 | NAD-dependent histone deacetylase activity (H3-K18 specific) | molecular_function |
| GO:0046969 | NAD-dependent histone deacetylase activity (H3-K9 specific) | molecular_function |
| GO:0046970 | NAD-dependent histone deacetylase activity (H4-K16 specific) | molecular_function |
| id | description |
|---|---|
| K06067 | HDAC1_2; histone deacetylase 1/2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036954944.1 | True | 2318 | mRNA | 0.46 | 13 | 46849573 | 46858039 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC100136287 | LOC100136287 | coding | upstream | 138 | 46833759 ~ 46849435 (+) |
| fam167b | LOC106610812 | coding | upstream | 25497 | 46819121 ~ 46824076 (+) |
| LOC110498012 | LOC106579491 | coding | upstream | 131427 | 46635957 ~ 46718661 (+) |
| rhd | LOC100136695 | coding | upstream | 387823 | 46458273 ~ 46461750 (+) |
| LOC110498004 | LOC106580093 | coding | upstream | 532920 | 46257919 ~ 46318609 (+) |
| pabpc4 | LOC106578531 | coding | downstream | 21135 | 46879174 ~ 46895034 (+) |
| ppie | ppie | coding | downstream | 37836 | 46895875 ~ 46903367 (+) |
| LOC110498023 | LOC106578479 | coding | downstream | 43374 | 46901413 ~ 46905243 (+) |
| gjb3 | LOC106578429 | coding | downstream | 64522 | 46922561 ~ 46926645 (+) |
| LOC110498028 | LOC106578112 | coding | downstream | 120134 | 46978173 ~ 46980818 (+) |
| G1630245 | LOC106562530 | non-coding | upstream | 19252 | 46829978 ~ 46830321 (+) |
| G1630237 | NA | non-coding | upstream | 21281 | 46827979 ~ 46828292 (+) |
| G1630236 | NA | non-coding | upstream | 21922 | 46827439 ~ 46827651 (+) |
| G1630233 | NA | non-coding | upstream | 31154 | 46818160 ~ 46818419 (+) |
| G1630229 | NA | non-coding | upstream | 40810 | 46806636 ~ 46808763 (+) |
| G1630239 | LOC106578367 | non-coding | downstream | 74152 | 46932191 ~ 46934633 (+) |
| G1630301 | NA | non-coding | downstream | 105310 | 46963349 ~ 46983339 (+) |
| G1630300 | NA | non-coding | downstream | 126793 | 46984832 ~ 46985582 (+) |
| G1630315 | NA | non-coding | downstream | 131272 | 46989311 ~ 46990215 (+) |
| G1630316 | NA | non-coding | downstream | 132373 | 46990412 ~ 46990816 (+) |
| G1629912 | NA | other | upstream | 623753 | 46225382 ~ 46225820 (+) |
| G1629779 | LOC106580335 | other | upstream | 832934 | 46013724 ~ 46016639 (+) |
| G1629210 | NA | other | upstream | 1332925 | 45516174 ~ 45516648 (+) |
| G1629200 | NA | other | upstream | 1347310 | 45501794 ~ 45502263 (+) |
| G1631702 | NA | other | downstream | 802087 | 47660126 ~ 47661235 (+) |
| G1631844 | NA | other | downstream | 889658 | 47747697 ~ 47749082 (+) |
| LOC110498044 | LOC106575475 | other | downstream | 1265909 | 48122225 ~ 48129380 (+) |
| LOC110498372 | LOC106575065 | other | downstream | 1720739 | 48251112 ~ 48583066 (+) |
| LOC110498046 | LOC106574720 | other | downstream | 1731586 | 48588944 ~ 48678169 (+) |
