LOC110498023 (LOC106578479)


Basic Information

Item Value
gene id LOC110498023
gene name LOC106578479
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46901413 ~ 46905243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574562.2
cgaTATTTTTGACTAACGGTCTGAAATAAAGCCTATGACCAGCCGCTCCACTCTGAATAACATTTAAATGACCGGCGAAAACACTCCGTTCGATGGTTCGTTCACGAGCCACACCTGGATAAATGGAACGTTGTACCGTAACGTCGTTATGTTAATTCCTTTCTGAAATCTTCATAGATTTTCATCTGTGGGGCGCAGTAAAACCATATTTCTCCATTACGATACGAACTGCAACTTTCCCGACGGAGTTTATGGTCCTTTCTATATAAAGTCATTTTGAAGTATCGCTGAAAGTGAAGAACACTCCAGAATTTTACCTGAGATCTCAACCAACAGTTGAAATAGTTTCTCGCACTAATTATTCCGTAATAACTTTCGTCAGGGAGGTAGATTGTGAGTCAGTCTCACAATGAACTGGGCATTCCTCCAGAGCCTCCTCAGTGGGGTGAACAAGTACTCCACGGCGTTCGGCCGCGTGTGGCTGTCCGTTGTCTTCCTCTTCAGGGTCATGGTGTTTGTCGTGGCAGCCGAGAATGTGTGGGGCGATGAGCAAAAAGACTTCACGTGCAACACGGCCCAGCCTGGCTGCCACAACGTCTGTTACGACCACTTCTTCCCTGTGTCCCACGTCCGCCTGTGGGCCCTGCAGCTCATCTTCGTCACATGTCCCTCTCTCCTGGTGGTAATGCACGTAGCCTACAGAGATGAACGTGAGCGTAAACACACACTAAAATACGGTGAGGGCTGCCAGAAAATCTACATGAACACCGGTAAGAAGCGTGGAGGGCTGTGGTGGACCTACGTCCTGACCCTGGTCTTCAAGGTGGCTGTGGACGCCACCTTTGTGTATTTAATCTACCATATCTACGAGGGCTATGACTTCCCCTCCCTCATCAAGTGTGAGCAGAAGCCCTGTCCCAACAAGGTGGACTGCTTCATTGCTCGCCCCACTGAGAAGCGGATCTTCACCATCTTCATGGTGGTCACCAGTCTGGCTTGTATCCTGCTCTCCTTCTTGGAGATCCTGTACCTGGTCGGGAAACGCTGTAAAGAGGTCTTCACCCGTATGCACAAGAACTCACCCTCCTCCACCATCCAGCCACGCCAGATGGCCATGGCTACCTCCCTGGTGGTTGGTGGCAAGAATGGAATGCAGTTCAACTCATTAAAGCTGCCCTCAATAAAGCTACCCAGCAAGGATACCTCAGCCCCATCTTATAGCGTTGTTGTGTATGCCTGAGGTAAAGACTGGTCAAAGACATTAGAGACTGAATGAGAGAATGCAAAGAAGACATAAGTATGGAGACAATGGGATATATCTTCCATTTCTCTTCAGGCCCTCACTGGGCTAGAGAGTACCTCACTGCCATTCAAGACTGTCTTCTCATTGCCTGAGCTACAATGGAACTGGATGGCTCTTGACATTCCTGGATAAATTGTTTACCTACCATTCTGTCATTGACCGGGTAATTAAACAAATCaattagtcactttaaataaaatATCCATCATTTACAGAGGAAAGTTTCACGCTAGGGCTGGGAAATGTAATTTATTCTTATGTTATTTGTTCGCTGTCTACCACACCTCACAACTTTACCAGTGCTATTTTTATGAAAGGACTCAACCATTGCCACACTGTGCCCATACCACTGCTGTTCTTATGCCCTCGAGAAGTTGTTTTCCCTGTCTCATCCTTcattacgaatggcagagactGCATCAGGCTTTGTTGTGAAAAAGATGAAGCAAAGAGCAATGTATTTTCAGACAATTAAAAATATGTAATTTCTTCTATGGACTTTGAGAGTATTTTTCTGGTCATACTGATGTTAGTCCATTAGATATGCACAAACATGGCTTGAAAAATGAGTATGGCTATTCTGTGTTTATGCTTATTACATTGTATATTCTAAAATACATACACTCTGCATAAAGccagtagagataatgattttaGTGGGTTTCTGTAAGCTGTTGATGAAACTGTGTATCTCAAAATACATGGATGTAAACATATTTGGGGATatttacagtgtcttcagaaagagTTCATACACTTTTACTTGgttcatattttgttgtgttacaacctgaattcaaaatgtattaaatctttttttctctcacccatctacacataataccccatgatgacaaagtgaaa

Function

NR:

description
gap junction beta-4 protein-like

GO: NA

KEGG:

id description
K07623 GJB4, CX30.3; gap junction beta-4 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574562.2 True 2167 mRNA 0.44 2 46901413 46905243

Neighbor

gene id symbol gene type direction distance location
pabpc4 LOC106578531 coding upstream 6379 46879174 ~ 46895034 (+)
LOC110498019 hdac1 coding upstream 43374 46849573 ~ 46858039 (+)
LOC100136287 LOC100136287 coding upstream 51978 46833759 ~ 46849435 (+)
fam167b LOC106610812 coding upstream 77337 46819121 ~ 46824076 (+)
LOC110498012 LOC106579491 coding upstream 183267 46635957 ~ 46718661 (+)
gjb3 LOC106578429 coding downstream 17318 46922561 ~ 46926645 (+)
LOC110498028 LOC106578112 coding downstream 72930 46978173 ~ 46980818 (+)
LOC110498029 NA coding downstream 375424 47280667 ~ 47338219 (+)
LOC110498032 LOC106577542 coding downstream 609581 47514824 ~ 47519654 (+)
LOC118941362 LOC106568776 coding downstream 859141 47764384 ~ 47765501 (+)
G1630245 LOC106562530 non-coding upstream 71092 46829978 ~ 46830321 (+)
G1630237 NA non-coding upstream 73121 46827979 ~ 46828292 (+)
G1630236 NA non-coding upstream 73762 46827439 ~ 46827651 (+)
G1630233 NA non-coding upstream 82994 46818160 ~ 46818419 (+)
G1630229 NA non-coding upstream 92650 46806636 ~ 46808763 (+)
G1630239 LOC106578367 non-coding downstream 26948 46932191 ~ 46934633 (+)
G1630301 NA non-coding downstream 58106 46963349 ~ 46983339 (+)
G1630300 NA non-coding downstream 79589 46984832 ~ 46985582 (+)
G1630315 NA non-coding downstream 84068 46989311 ~ 46990215 (+)
G1630316 NA non-coding downstream 85169 46990412 ~ 46990816 (+)
LOC110498004 LOC106580093 other upstream 641765 46257919 ~ 46318609 (+)
G1629912 NA other upstream 675593 46225382 ~ 46225820 (+)
G1629779 LOC106580335 other upstream 884774 46013724 ~ 46016639 (+)
G1629210 NA other upstream 1384765 45516174 ~ 45516648 (+)
G1629200 NA other upstream 1399150 45501794 ~ 45502263 (+)
G1631702 NA other downstream 754883 47660126 ~ 47661235 (+)
G1631844 NA other downstream 842454 47747697 ~ 47749082 (+)
LOC110498044 LOC106575475 other downstream 1218705 48122225 ~ 48129380 (+)
LOC110498372 LOC106575065 other downstream 1673535 48251112 ~ 48583066 (+)
LOC110498046 LOC106574720 other downstream 1684382 48588944 ~ 48678169 (+)

Expression


Co-expression Network