LOC110498028 (LOC106578112)


Basic Information

Item Value
gene id LOC110498028
gene name LOC106578112
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 46978173 ~ 46980818 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954947.1
AACGAAATCCATCAAACCCAAGCTTTGAACCCTCCCACTCCCACATCCAAATCCACTGGGATCTTCGTTTCGTCTGATTGGTTGAAGATGCGGCAACAAGGGGCGAGAACAATAGCATTATTCCGGCATAAAAAGAGTGCAGCTATGCCTTAGAGACGAAAACATTTCAGCAACACAGAGATCAATAGCTTAGCGAAAATATAAAATAGCAACCGAGGCTCCCGGTGTGACTGTAATTCCACAAACCTGGATATCATCCGAGACTTCGCCCACCTCTCCAAAGTGCTTTTCAGCCATTCGCAAAGATGCCCAAAGGATTCCTGGTAAAAAGAAACAAGAAATCAGCGCATGTTTCCTATAGGACTCGTACCGATGAGTATGAGCAGGAGCATCACATCCCAAACTTTCAGAGTCAGGTGGACTCATCTCCGCCTGTCTCTGTTCCGTCCTGTTTGGACCGTGCAGCCCCATCGCCGGACATCGCAGCAGACGCCCCGATCACCAGGCTGGATGCTGAAGCGGTTCAGTTTGGCAACCCCGAGGCGATGTACCAAGCCCTCTACAGCCCCACCCGGCCCATCAGCAAGGACCATGAGAGAACATATTACGGGAGAAGTTTCAATCTAGGCTCGCCAATATCTGCCGAGTCATTCCCGACATCTTCCTCCATCAGCAGCTTTGATAATCTCCTGTTCGCCCCCGTGGATTTGAAAATAGGCACCAGCAACAGCAACCGCAGCGGCATCACCAGCAGCATCCCGGCTACAGTCATCAGGGGCGGTACCAAGAGGCCCGCATCCGACACTGAGCGCAAGAGCAAACCTGCATCCAAGAAACCCAAAGCCATCAGAAAACTGCATTTTGAAGACGAAATGACAACGTCTCCGGTACTTGGTCTTAAAATCAAAGAGGCTCCTGTCGACTTTAAACCCAGAACGCAGACATCGGCAGGCGGGAAGCCGTTAGGAGAGTTTGTCTGCCAATTGTGTAAGGAAGCTTACGCGGACACATTTTCTTTAGCCCAGCACAAGTGCTCTAGGATCGTGAGAGTTGAGTACAGGTGTCCTGAGTGTGATAAGATGTTCAGTTGCCCGGCTAACCTCGCCTCTCACCGGCGCTGGCACAAACCGAGAGCGCAAAGCGCAGCAGGGATACCATCTACCCAGAGAATCAAATCTGAAATGGCCAAAATGCACCCCGCTGTCAAAACCATCCCGGAGGAAGCCAAAGACTCAAGAGCCGAGCTACTGAGTGACAGAGACACCCCAAGCCCAGGTGTGTCTGAATCGGGCTCGGAAGATGGTTTATACGACTGCCAATATTGTGGGAAAAGATTTAAGCGTCAAGCATACCTAAGAAAACATATTCTGGGACACCAAGCCTTGCAGAATAAAATGTTCAAGGACCACGCGTTTCAAAACAGCGACAGAGTGGAAGAGCAGGTGCCAGTGTCCACCTCATCCTCAGAGGAAAACCCAAACCAAAGTCCCCTGAATCTGAGCCCGGTGGACTGCCTTCTCTGCCCCGTTTGCGGGGAGAATTTCCCTAACAGGGCCAGCCAGGAGAGACACCTGCGTCTCATGCACTGCTCCCAGGTGTATCCCTGCAAGTATTGCCCTGCCACTTTCTACAGCTCACCCGGACTCACGAGGCACATCAACAAATGCCATCCGTCGGAAAATAGGCAGGTGATCCTGCTTCAAATGCCCGTGCGCCCGGCTTGCTGAACACAAGAAAACGCGTGCCTTGGACCGGAGCGTTGAAAAAAAGTTATTTACCTAGATTACAGAAAGACAGGGCAACTTGATGTTTAGATTTGTGTGTTTGATGAGAGGTATTCTATCAATGCCAATCAGCTGGTTGTTGAATGCTTATCCATTCCTTGAATATAAAAATAGGCATATATTTTGCGATTTTTCTCAAATTAGTTTATCGAAAGAAAACAAAACGTTAGTTTGACtgttaaatgtatttttctaGGACAGCTGCAGACGTGCTCAAGTAATAGCTTCTAGACCTAAGAACTGTTTAATTTGATATGGGTATTTTCTCTCATAAAATACTTTTAATTCACCGACTGTGAATTTCTGTATATCATTAAACTTTGTTAACTTATGAATTACAGGACAGACTGATCAACTTTGTCTTAAAAACCTAAAACTATCGAAACCTTTCCCTTTAGTAGAACCACAAATGCCTTTAGAATATAAGCACATCAAAACTCTGCTGTATAACTGCCTTAAAAAACTCAACATAATAATGGTTGTTTTCGTTTAGAATGCGGGCACATATTTTATTATTAATTGTTGCAATATTGTTTAATCATAatagttgtatttatttatttatttatttattctattTGCAATTATCTTATGtaatgtattgttgtgttgtgtgattatTCTGTGGTTGTTCTGGCAGTTCACATGTTGTAGCCAAATGTTATGTCAAAATTATGAGTTGTGATAATTGTCGTGGACCGGTCTAAATCTTCAATCTCCACAGCTCTTGTAAAACGTAAAGCTCTTACCTTAGATGCAATCTTTTTCTATGAACAGGTTATTTTCTTAAATGTTGGCTTTGATTGTATGTGTACACTGTTGTCTCCAATTATACATCGAAATAAAAACGATATTTTAAAAA

Function

NR:

description
PREDICTED: insulinoma-associated protein 1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954947.1 True 2646 mRNA 0.45 1 46978173 46980818

Neighbor

gene id symbol gene type direction distance location
gjb3 LOC106578429 coding upstream 51528 46922561 ~ 46926645 (+)
LOC110498023 LOC106578479 coding upstream 72930 46901413 ~ 46905243 (+)
ppie ppie coding upstream 74806 46895875 ~ 46903367 (+)
pabpc4 LOC106578531 coding upstream 83139 46879174 ~ 46895034 (+)
LOC110498019 hdac1 coding upstream 120134 46849573 ~ 46858039 (+)
LOC110498029 NA coding downstream 299849 47280667 ~ 47338219 (+)
LOC110498032 LOC106577542 coding downstream 534006 47514824 ~ 47519654 (+)
LOC118941362 LOC106568776 coding downstream 783566 47764384 ~ 47765501 (+)
LOC110498042 icef1 coding downstream 881045 47861863 ~ 47937951 (+)
LOC110498039 LOC106575636 coding downstream 957327 47938145 ~ 47981306 (+)
G1630239 LOC106578367 non-coding upstream 43540 46932191 ~ 46934633 (+)
G1630245 LOC106562530 non-coding upstream 147852 46829978 ~ 46830321 (+)
G1630237 NA non-coding upstream 149881 46827979 ~ 46828292 (+)
G1630236 NA non-coding upstream 150522 46827439 ~ 46827651 (+)
G1630233 NA non-coding upstream 159754 46818160 ~ 46818419 (+)
G1630300 NA non-coding downstream 4014 46984832 ~ 46985582 (+)
G1630315 NA non-coding downstream 8493 46989311 ~ 46990215 (+)
G1630316 NA non-coding downstream 9594 46990412 ~ 46990816 (+)
G1630317 NA non-coding downstream 10069 46990887 ~ 46991746 (+)
G1630321 NA non-coding downstream 24332 47005150 ~ 47005351 (+)
LOC110498004 LOC106580093 other upstream 718525 46257919 ~ 46318609 (+)
G1629912 NA other upstream 752353 46225382 ~ 46225820 (+)
G1629779 LOC106580335 other upstream 961534 46013724 ~ 46016639 (+)
G1629210 NA other upstream 1461525 45516174 ~ 45516648 (+)
G1629200 NA other upstream 1475910 45501794 ~ 45502263 (+)
G1631702 NA other downstream 679308 47660126 ~ 47661235 (+)
G1631844 NA other downstream 766879 47747697 ~ 47749082 (+)
LOC110498044 LOC106575475 other downstream 1143130 48122225 ~ 48129380 (+)
LOC110498372 LOC106575065 other downstream 1597960 48251112 ~ 48583066 (+)
LOC110498046 LOC106574720 other downstream 1608807 48588944 ~ 48678169 (+)

Expression


Co-expression Network