LOC110498030 (LOC106577595)


Basic Information

Item Value
gene id LOC110498030
gene name LOC106577595
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47389804 ~ 47394206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574570.2
CGCATCACGAGCCTCAGCGTATAGCCAAAAGCGTAGAGATGGCTCACAGAGGCCGTTTATTTGATGGCCTATGCAGGACGTCGCTCCGCCCCCTGTGTTTGTCGTAAACCTGGCTCCTGGCTACAATAAACCCGAGCTATGAGCACCCAGGGCTCGCCTCCTTCTCCAAGGCGATCAATCGGATCGCAGGCGTACTACAAGCACTCTCTTACGTAGCCATCCACAAGGAGAGAGCTGATACAACAACACGGTTGATCTGCTCAACAAAATCTACCTGCTTTCTGAACCATGTCGTTGAGCCCAAAACATACAACGCCTTTCTCAGTGAGTGATATTTTGAGTCCTATCGAGGAGACCTACAAGAAGTTTAGTGCCATGGACGGCGCAGGGAACCTAACCTCTCCACTGGGAGCTTACCGACAGCCTCAGGTGTCCCAGACTGGCATGCAACAGCACTCCATGGGCCACAACGCCACCGTGGCGACCACCTACCACATGCCACACACTGTCTCCCAGTTCTCGCACAGCGCCATGGGGGGATACTGCAATGGGAGCATTGGCAACATGGGAGACCTTCCGTCGTACCAGGAAACCATGAGAAATAGCGCAACAGCCACAGGGTGGTATGGCGCAAACACGGATCAAAGATATTCAACAATTTCTAGATTCATGGGACCTTCCACAGGTATGAACATGACTGGAATGGGGACCCTAACAGGCATGGGGGACGCCTCCAAGTCCATGCCACCCCTGCACGCAGCGCCCAGGAGGAAACGACGGGTACTCTTCTCCCAGGCTCAGGTGTATGAGCTAGAGAGGagattcaaacaacagaaatacctCTCAGCGCCAGAGCGGGAACACCTGGCCAGTATGATCCATCTGACCCCGACCCAGGTCAAGATCTGGTTCCAGAACCACAGGTACAAGATGAAGCGACAGGCCAAGGACAAAGCGGCGCAGCAGCTGCAGCAGGACAGCAGCCTGTGTCAGCAACAACAGTCGCCGAGGCGCGTGGCAGTGCCTGTTCTGGTGAAGGATGGTAAACCATGTCAGAACGGCTCCAACACACCAACCCCAAACCAGCAGCAGGtacagcagcaacagcaacagcaacaacagcagcagcaacagcaacagaACGGTTCTGGGGTCGTGCTCACCGCTTCCAGTAATGCCATCAATCAACACCAAAACCATCAGGTTAACTCATTAGTTCAGGCCCAAGACCTGGAGGAGATGTCACCTAGCCCTCCTTCACTCCATAGCCAGATCAACATGGCGCAAATAGACACTTCTGTTATAGACTACACTAATAACATGGTCAGTTCCAACCTCCTCTACGGCAGAACTTGGTAGGACCTACTGTAATTTACAATTTTTATATGTTAACCCGCGGACGAGCCCAAGAGAAAACGAGACATATCATGTTGATATACATAACTGTGCGAAAATGGAGCCCTTGGTGTCTGAGAGGACAACGCGCTCAGGCGCACCAGCTGGTCAGGGCACATTTTCTTGACATTTCTGAAGAGGAAGACTATTTTTGAACATTAAACGAAATTGCTACCCTTGAAATAGATTGTGTCGTTTCTGTACCTTTTCTAATCAATGTGATGGACTTCCTCATGATGTTAACGTTGTCTGTGTTGTTGAACGGGAATGCTGCTCCACATTAAGGGGACTGTAGGGAAAAGTGAGATAGGTGGGATCAGGTATGAACTCTCTTAAGGTACTAAACCACCACTTCTTTGCAGTGATAACCTGGTATTTGATGCTATTAATATTGTAATCTAATGTATTAATTTAGACTTAAAGAAAGTAGGAACTGTATATTTGGCTAACACACGAGAATGCGTTTACCTGTATGCTTGTTTTAAGTCGACTTTTTTGTTATCTTTCTTCTTTTGTCAAAACGAACAAATGCGTGATGGCTGCTGTACATGTTTCAAACCAATTGAACGTTAACAATAAATCACTTGAAGTGCGA
>XM_021574572.2
CGCATCACGAGCCTCAGCGTATAGCCAAAAGCGTAGAGATGGCTCACAGAGGCCGTTTATTTGATGGCCTATGCAGGACGTCGCTCCGCCCCCTGTGTTTGTCGTAAACCTGGCTCCTGGCTACAATAAACCCGAGCTATGAGCACCCAGGGCTCGCCTCCTTCTCCAAGGCGATCAATCGGATCGCAGGCGTACTACAAGCACTCTCTTACGTAGCCATCCACAAGGAGAGAGCTGATACAACAACACGGTTGATCTGCTCAACAAAATCTACCTGCTTTCTGAACCATGTCGTTGAGCCCAAAACATACAACGCCTTTCTCAGTGAGTGATATTTTGAGTCCTATCGAGGAGACCTACAAGAAGTTTAGTGCCATGGACGGCGCAGGGAACCTAACCTCTCCACTGGGAGCTTACCGACAGCCTCAGGTGTCCCAGACTGGCATGCAACAGCACTCCATGGGCCACAACGCCACCGTGGCGACCACCTACCACATGCCACACACTGTCTCCCAGTTCTCGCACAGCGCCATGGGGGGATACTGCAATGGGAGCATTGGCAACATGGGAGACCTTCCGTCGTACCAGGAAACCATGAGAAATAGCGCAACAGCCACAGGGTGGTATGGCGCAAACACGGATCAAAGATATTCAACAAGTATGAACATGACTGGAATGGGGACCCTAACAGGCATGGGGGACGCCTCCAAGTCCATGCCACCCCTGCACGCAGCGCCCAGGAGGAAACGACGGGTACTCTTCTCCCAGGCTCAGGTGTATGAGCTAGAGAGGagattcaaacaacagaaatacctCTCAGCGCCAGAGCGGGAACACCTGGCCAGTATGATCCATCTGACCCCGACCCAGGTCAAGATCTGGTTCCAGAACCACAGGTACAAGATGAAGCGACAGGCCAAGGACAAAGCGGCGCAGCAGCTGCAGCAGGACAGCAGCCTGTGTCAGCAACAACAGTCGCCGAGGCGCGTGGCAGTGCCTGTTCTGGTGAAGGATGGTAAACCATGTCAGAACGGCTCCAACACACCAACCCCAAACCAGCAGCAGGtacagcagcaacagcaacagcaacaacagcagcagcaacagcaacagaACGGTTCTGGGGTCGTGCTCACCGCTTCCAGTAATGCCATCAATCAACACCAAAACCATCAGGTTAACTCATTAGTTCAGGCCCAAGACCTGGAGGAGATGTCACCTAGCCCTCCTTCACTCCATAGCCAGATCAACATGGCGCAAATAGACACTTCTGTTATAGACTACACTAATAACATGGTCAGTTCCAACCTCCTCTACGGCAGAACTTGGTAGGACCTACTGTAATTTACAATTTTTATATGTTAACCCGCGGACGAGCCCAAGAGAAAACGAGACATATCATGTTGATATACATAACTGTGCGAAAATGGAGCCCTTGGTGTCTGAGAGGACAACGCGCTCAGGCGCACCAGCTGGTCAGGGCACATTTTCTTGACATTTCTGAAGAGGAAGACTATTTTTGAACATTAAACGAAATTGCTACCCTTGAAATAGATTGTGTCGTTTCTGTACCTTTTCTAATCAATGTGATGGACTTCCTCATGATGTTAACGTTGTCTGTGTTGTTGAACGGGAATGCTGCTCCACATTAAGGGGACTGTAGGGAAAAGTGAGATAGGTGGGATCAGGTATGAACTCTCTTAAGGTACTAAACCACCACTTCTTTGCAGTGATAACCTGGTATTTGATGCTATTAATATTGTAATCTAATGTATTAATTTAGACTTAAAGAAAGTAGGAACTGTATATTTGGCTAACACACGAGAATGCGTTTACCTGTATGCTTGTTTTAAGTCGACTTTTTTGTTATCTTTCTTCTTTTGTCAAAACGAACAAATGCGTGATGGCTGCTGTACATGTTTCAAACCAATTGAACGTTAACAATAAATCACTTGAAGTGCGA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09342 NKX2-1, TITF1; homeobox protein Nkx-2.1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574570.2 False 1990 mRNA 0.49 3 47389804 47394206
XM_021574572.2 True 1963 mRNA 0.49 3 47389804 47394206

Neighbor

gene id symbol gene type direction distance location
LOC110498370 LOC106577869 coding downstream 217005 46982690 ~ 47172799 (-)
LOC110498027 LOC106583458 coding downstream 429061 46955412 ~ 46960743 (-)
gale gale coding downstream 443000 46941273 ~ 46946804 (-)
zbtb8a zbtb8a coding downstream 449209 46936326 ~ 46940595 (-)
LOC110498025 LOC106578367 coding downstream 454098 46932146 ~ 46935706 (-)
LOC110498031 nx22a coding upstream 23184 47417390 ~ 47447993 (-)
LOC110498033 NA coding upstream 312296 47706502 ~ 47725019 (-)
LOC110498035 LOC106576115 coding upstream 332807 47727013 ~ 47747466 (-)
LOC110498037 LOC106575860 coding upstream 375681 47769887 ~ 47839786 (-)
LOC110498038 LOC106576015 coding upstream 445679 47839885 ~ 47845749 (-)
G1631454 NA non-coding downstream 12403 47352724 ~ 47377401 (-)
G1631345 NA non-coding downstream 76589 47311555 ~ 47313215 (-)
G1631213 NA non-coding downstream 347595 47041992 ~ 47042209 (-)
G1631206 NA non-coding downstream 383909 47005684 ~ 47005895 (-)
G1631205 NA non-coding downstream 388197 47001174 ~ 47001607 (-)
G1631621 NA non-coding upstream 127821 47522027 ~ 47522243 (-)
G1631628 NA non-coding upstream 142661 47536867 ~ 47537092 (-)
G1631638 NA non-coding upstream 162496 47556702 ~ 47556969 (-)
G1631721 NA non-coding upstream 233839 47628045 ~ 47628728 (-)
G1631723 NA non-coding upstream 236702 47630908 ~ 47631112 (-)
G1631120 LOC106612182 other downstream 559154 46830334 ~ 46830650 (-)
G1631005 NA other downstream 760298 46619207 ~ 46629506 (-)
LOC110498001 NA other downstream 1383927 46003765 ~ 46008718 (-)
G1627068 NA other downstream 3980695 43408727 ~ 43409109 (-)
G1626324 NA other downstream 4551370 42759294 ~ 42838434 (-)
G1632192 LOC106575636 other upstream 522089 47916295 ~ 47980466 (-)
G1632228 NA other upstream 574308 47968514 ~ 47970332 (-)
LOC110498045 LOC106575475 other upstream 717707 48111907 ~ 48147170 (-)
LOC110498375 dlgap2 other upstream 1501324 48812312 ~ 48896302 (-)
LOC110498059 LOC106573685 other upstream 2062888 49457082 ~ 49460760 (-)

Expression


Co-expression Network