LOC110498031 (nx22a)


Basic Information

Item Value
gene id LOC110498031
gene name nx22a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47417390 ~ 47447993 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574574.2
GTTTTCCTATTGATTCAATATTGTATATATGTGGAGAGAAGCCTATAATGCAATAGCTTTTTCAGGAGCAATTTGTTAAAACTCGCTTTCAAGTATTCGGAGTATAAAGCTACTTGGAGGTCCTTTGTATGTAAATAGGGTGTAAAAAAAAAGGCCCTTCCCATCTTTGTAATTAATTGACACGTTATACCACTCATCATGTTCTGAAGCACCAATGGTAGAGGCTCGGATCTCCCCAAAACCCACAATTTCACATCTGCAAACACTGTCTTCATCCACTTGACTCCCAAGACCCGCCCACACGTGGCCAACCTTTTGCGTTTTTAATGCTTTTTCACTGCAGGTTCATCTGTTGAGACCAACCTTATATGGGCTGATCGGACCGGTAATGGCTTATTTCTCCGTAGCACCCAGCAGTAGCACAGTATCAATGAGACAGATATAGCACTTCAGCCACTTTGGCATTCTTCCTGGACTTACAGAACTGATTCCTCTACTACTTGGATAGGCAATGGTTATCGACAGAGGCTCATGATTTTCTTTGAATAGTTCAAGGTAAAACAGCACTGAGATATCATTTTTTCTGAACTGcgattgtgttttgtgttttaaaGCAGCGGATTGCCAAACTGGTGCAGCAAATTTCCAGCATACATTTCCCCAGAATATGTCGTTGACCAACACAAAGACCGGCTTTTCTGTGAAGGACATTTTGGACCTCCCTGACACGAATGATGAAGAAGGATCTATCACTGGACCGGAGGAAGATAACGAGGGATCGGAGACGACAAAACCCACTGGAGTTTTGGTACAAAGTCCGCTAGAAAACGTTCAAAATCTGCCTATAAAGAACCGCTTTTATGATAGTAGTGACAATCCTTACACAAGATGGCTTGCCACCACAGACACTCTCCAATATTCACTGCATGGTCTTTCAGCAAGTTCTCAAGACTCAGCCAAGTCCCCAGAACCCTCTGCGGACGAATCGCCAGACAATGACAAGGAAACGTCAAGCAACGGCAGCGACTCCGGTAAGAAGCGAAAAAGAAGAGTGCTGTTTTCCAAGGCACAGACGTACGAACTTGAGCGTCGGTTTAGGCAACAGAGATACCTATCCGCGCCAGAGAGAGAACACCTCGCGAGTTTGATTCGCCTGACACCAACTCAAGTGAAAATTTGGTTCCAGAATCATCGGTACAAAATGAAGAGAGCGCGCGCTGAAAAAGGACTTGAAATGTCTTGTATAACAAGCACAATCTTCTCAAGTAAGATGGCCATTGGAGACTACGCCAACAATCATGTTCCAAGAGATGAGTATGTATGCCTTTCCCTAAATGGATTGTCTCACATTCTTCACAAGATGAACCTGAGATGCTTCAGATGCCAACAGTGTCAATCGATGCTTGGATTTTCAGTTTGATAATGACTGCCCATCAtctgtcacagacagacagacactcttcAATCAAAGAACAGTTTAACCATGATAACAAGACACAGCTTGGATGGAAGCTCTGTGTATAATATAACAACTCAAAACTATTTAAACGTTAAAgaggaactgacagcgttttaactactttgcataTATAAAACAAACAGGTTTCATTTGACTCAACATTGCATTATGTacactaaggcattgttggcagattcatataattcaccaatacatttcttggtagtccaaaacatattgctatcaggttgtaaatcacagctggcctggtacattgtttgctgcctccatttgGGATGTACTGTGTTTCAATGACTAAGTATTTTGGACAAAAACGCATGAATGttactaaggctgggaatgtcaatataATGAATTTAGCAAgtgcaatgatcacaagtcagtcataacgtggctaatatgctagcgtatctatttatgtagaaagctaaaaaaaaaaaagagtctaaCTTTAGCTAGATAGGCAGTTAGCTGCTAGGAGGATatcatgtcattggaggagtgtGTGAGTGATTTACTTTTTTAACTCATATTGTTTTTCGGTGGCTACACAGCTAGAGTTGCACGTGTCATTttgttagctagcaagaaatgtgaatcacTTTGAAATGTGAACAACTTttatccagttagcatatctcttggGCTCGCAAATTCACTCTGGCAAGCTATCTACTctaatttcagagcactcttgtctgagtgtgccagagcgcagagtAGATGCATTTCCCAACGcgcaacacctgttgaatatgaccAGTATCAGTAAATGTAGGCTAAACAAAGTAATAGTTAGTCAAGAACACTCAATATAACATTCAAACAttgtaaccagctctgctaggacaAGTAACATggtcagtgaggtgttctctcatttgtgtctggaagtagctagcaagcaagccaTTTTTAGTCAGTaagcttgggtgcttggttgggacaatGCATGTATAGGCAAGCAAGCTGCAGAAGGATAAACAGTCTATTCGACATTGTTTATCGGTGCAATTTGAACacgtttgagagggtttatctaatgttcctttgTTAGATttttagctcatcttgctctggctaTCATTAGTTGTTGATCGTGTTGCTGTTGATGTACATATAGGGATAGCCTACCTCtttatggttgtttgatcaataggactgtaaagttcccaaatgtataAGGACTCCCGTGGTATTTAGCTACATATTTGCAGAAAACCATTCAAGTGTATTTTGTCGCTTTTGGCAAAtgctttctaatgatctaaagtcgagctgttgcaactgcctgtaaacacacagtccagttcaaagtggatgatggcaggcccgtgtgccaaatggcttgtttgcatataggcctactgtatctctgattggctatggcgcaCCGGTCTACGTAGACTCTGGTCCTGGGGGTGTATAGGAACAGATTTTAATAAGATTTCATCTTGCTAAagtgctgtcagttccactttaagtcATAGATCTAAGTTTTGTATTTTGTCTGGAAAGTGTTTAAACCTCATGGGGATCCCTGTAAAAGTCTAGTTTATATTGATTGTATTATTTTAATGACGCATTTTTTTAATCTGTTTGACAGTGgtgaaataaacatttatttatctgttttacagtggtgaaataaacatttatttatctGTATTTGACAGTGgtgaaataaacatttatttatctGTATTTGACAGTGGTGAAATAAAGTTCAGTCTG
>XR_005037761.1
CCTATTGATTCAATATTGTATATATGTGGAGAGAAGCCTATAATGCAATAGCTTTTTCAGGAGCAATTTGTTAAAACTCGCTTTCAAGTATTCGGAGTATAAAGCTACTTGGAGGTCCTTTGTATGTAAATAGGGTGTAAAAAAAAAGGCCCTTCCCATCTTTGTAATTAATTGACACGTTATACCACTCATCATGTTCTGAAGCACCAATGGTAGAGGCTCGGATCTCCCCAAAACCCACAATTTCACATCTGCAAACACTGTCTTCATCCACTTGACTCCCAAGACCCGCCCACACGTGGCCAACCTTTTGCGTTTTTAATGCTTTTTCACTGCAGGTTCATCTGTTGAGACCAACCTTATATGGGCTGATCGGACCGGTAATGGCTTATTTCTCCGTAGCACCCAGCAGTAGCACAGTATCAATGAGACAGATATAGCACTTCAGCCACTTTGGCATTCTTCCTGGACTTACAGAACTGATTCCTCTACTACTTGGATAGGCAATGGTTATCGACAGAGGCTCATGATTTTCTTTGAATAGTTCAAGGTAAAACAGCACTGAGATATCATTTTTTCTGAACTGcgattgtgttttgtgttttaaaGCAGCGGATTGCCAAACTGGTGCAGCAAATTTCCAGCATACATTTCCCCAGAATATGTCGTTGACCAACACAAAGACCGGCTTTTCTGTGAAGGACATTTTGGACCTCCCTGACACGAATGATGAAGAAGGATCTATCACTGGACCGGAGGAAGATAACGAGGGATCGGAGACGACAAAACCCACTGGAGTTTTGGTACAAAGTCCGCTAGAAAACGTTCAAAATCTGCCTATAAAGAACCGCTTTTATGATAGTAGTGACAATCCTTACACAAGATGGCTTGCCACCACAGACACTCTCCAATATTCACTGCATGGTCTTTCAGCAAGTTCTCAAGACTCAGCCAAGTCCCCAGAACCCTCTGCGGACGAATCGCCAGACAATGACAAGGAAACGTCAAGCAACGGCAGCGACTCCGGTAAGAAGCGAAAAAGAAGAGTGCTGTTTTCCAAGGCACAGACGTACGAACTTGAGCGTCGGTTTAGGCAACAGAGATACCTATCCGCGCCAGAGAGAGAACACCTCGCGAGTTTGATTCGCCTGACACCAACTCAAGTGAAAATTTGGTTCCAGAATCATCGGTACAAAATGAAGAGAGCGCGCGCTGAAAAAGACCTTTTCTAAACTCTAACAAATGATGGAGAACCCCTGGAAAGACCTACTTCTTCACTACCAGCTGGTCTATGCTGGCCTTCACAGTATAAAAACTGAAGCTGGAGGAGCTGAAATGCTTCGGGTGAAGGCTCAGCTTCCCAGAGAATATAGCTGGATGacacacacagcaacagagaTATGAGCAAGAGATATGTAACCACCAGAAGCCAGTAAGGCATAGTGTTTAGAACATTGTTTGTAGAGATGTAATGTATAAGCCTAACATAGTTCTGCATTCTATATGATGAAGAATCAATACACATTCTATGTTATATTTCTAAACACTATTTCTTTAGTGTTTGTCTTTGATCGTGTAAAGTGAGGTGAATAATGATTAA
>XM_021574575.2
CCTATTGATTCAATATTGTATATATGTGGAGAGAAGCCTATAATGCAATAGCTTTTTCAGGAGCAATTTGTTAAAACTCGCTTTCAAGTATTCGGAGTATAAAGCTACTTGGAGGTCCTTTGTATGTAAATAGGGTGTAAAAAAAAAGGCCCTTCCCATCTTTGTAATTAATTGACACGTTATACCACTCATCATGTTCTGAAGCACCAATGGTAGAGGCTCGGATCTCCCCAAAACCCACAATTTCACATCTGCAAACACTGTCTTCATCCACTTGACTCCCAAGACCCGCCCACACGTGGCCAACCTTTTGCGTTTTTAATGCTTTTTCACTGCAGGTTCATCTGTTGAGACCAACCTTATATGGGCTGATCGGACCGGTAATGGCTTATTTCTCCGTAGCACCCAGCAGTAGCACAGTATCAATGAGACAGATATAGCACTTCAGCCACTTTGGCATTCTTCCTGGACTTACAGAACTGATTCCTCTACTACTTGGATAGGCAATGGTTATCGACAGAGGCTCATGATTTTCTTTGAATAGTTCAAGGTAAAACAGCACTGAGATATCATTTTTTCTGAACTGcgattgtgttttgtgttttaaaGCAGCGGATTGCCAAACTGGTGCAGCAAATTTCCAGCATACATTTCCCCAGAATATGTCGTTGACCAACACAAAGACCGGCTTTTCTGTGAAGGACATTTTGGACCTCCCTGACACGAATGATGAAGAAGGATCTATCACTGGACCGGAGGAAGATAACGAGGGATCGGAGACGACAAAACCCACTGGAGTTTTGGTACAAAGTCCGCTAGAAAACGTTCAAAATCTGCCTATAAAGAACCGCTTTTATGATAGTAGTGACAATCCTTACACAAGATGGCTTGCCACCACAGACACTCTCCAATATTCACTGCATGGTCTTTCAGCAAGTTCTCAAGACTCAGCCAAGTCCCCAGAACCCTCTGCGGACGAATCGCCAGACAATGACAAGGAAACGTCAAGCAACGGCAGCGACTCCGGTAAGAAGCGAAAAAGAAGAGTGCTGTTTTCCAAGGCACAGACGTACGAACTTGAGCGTCGGTTTAGGCAACAGAGATACCTATCCGCGCCAGAGAGAGAACACCTCGCGAGTTTGATTCGCCTGACACCAACTCAAGTGAAAATTTGGTTCCAGAATCATCGGTACAAAATGAAGAGAGCGCGCGCTGAAAAAGACCTTTTCTAAACTCTAACAAATGATGGAGAACCCCTGGAAAGACCTACTTCTTCACTACCAGCTGGTAAGAAATAACTGAGCAAATATGCGTAAATATATGATTATACATGATCAGTgttttataatatatattttttaaatccattgaAAATCCATTGGCCAGAGATTTCTCTATTTTGTGCCTGCATGATGCCCGCCTCTTGGGGGGCAGTCAATTTAGCCAGACATGATTTAGACCAGGAACATTTCTCCTTTATGGAATAGTGTGGTCCTTGGGTACTTCATGGATGGACTGCAGTTAGTACCACAACTGTCAGTATTTGAATCATCCAAATATCTACACGACTAGTAACTACAGAGAGACGAGGGAAACAG
>XM_021574573.2
CCTATTGATTCAATATTGTATATATGTGGAGAGAAGCCTATAATGCAATAGCTTTTTCAGGAGCAATTTGTTAAAACTCGCTTTCAAGTATTCGGAGTATAAAGCTACTTGGAGGTCCTTTGTATGTAAATAGGGTGTAAAAAAAAAGGCCCTTCCCATCTTTGTAATTAATTGACACGTTATACCACTCATCATGTTCTGAAGCACCAATGGTAGAGGCTCGGATCTCCCCAAAACCCACAATTTCACATCTGCAAACACTGTCTTCATCCACTTGACTCCCAAGACCCGCCCACACGTGGCCAACCTTTTGCGTTTTTAATGCTTTTTCACTGCAGGTTCATCTGTTGAGACCAACCTTATATGGGCTGATCGGACCGGTAATGGCTTATTTCTCCGTAGCACCCAGCAGTAGCACAGTATCAATGAGACAGATATAGCACTTCAGCCACTTTGGCATTCTTCCTGGACTTACAGAACTGATTCCTCTACTACTTGGATAGGCAATGGTTATCGACAGAGGCTCATGATTTTCTTTGAATAGTTCAAGGTAAAACAGCACTGAGATATCATTTTTTCTGAACTGcgattgtgttttgtgttttaaaGCAGCGGATTGCCAAACTGGTGCAGCAAATTTCCAGCATACATTTCCCCAGAATATGTCGTTGACCAACACAAAGACCGGCTTTTCTGTGAAGGACATTTTGGACCTCCCTGACACGAATGATGAAGAAGGATCTATCACTGGACCGGAGGAAGATAACGAGGGATCGGAGACGACAAAACCCACTGGAGTTTTGGTACAAAGTCCGCTAGAAAACGTTCAAAATCTGCCTATAAAGAACCGCTTTTATGATAGTAGTGACAATCCTTACACAAGATGGCTTGCCACCACAGACACTCTCCAATATTCACTGCATGGTCTTTCAGCAAGTTCTCAAGACTCAGCCAAGTCCCCAGAACCCTCTGCGGACGAATCGCCAGACAATGACAAGGAAACGTCAAGCAACGGCAGCGACTCCGGTAAGAAGCGAAAAAGAAGAGTGCTGTTTTCCAAGGCACAGACGTACGAACTTGAGCGTCGGTTTAGGCAACAGAGATACCTATCCGCGCCAGAGAGAGAACACCTCGCGAGTTTGATTCGCCTGACACCAACTCAAGTGAAAATTTGGTTCCAGAATCATCGGTACAAAATGAAGAGAGCGCGCGCTGAAAAAGGTATGGAAGTgacccatctcccctctccccggCGGGTGGCCGTACCTGTCTTAGTCAGGGATGGAAAGCCTTGTCATACTCTTAAAGCTCAGGACTTGGCGGCCACTTTTCAGGCTGGATTCCCCCTCTCGGCGTATAGCGCCCAGACCCTTCATCAAATGCAATATAATGCTCAGTACTGCGCCGCCACCACGCCACAATTCCCTTCAGCACATCACTTGGTGCAAACGCAACAGTGGACTTGGTGAACTAGTTGAGACTGACGGGGCTGCTGTTTAGGAGCACGATAGGGATTTCACTAGAAAATAAAGACTTTTCATTTTGCAGCTTGACCCATATCTACCATTTTTTCGGGGCTAATATGTGCGCCGTGTTTACATGTTTTCGTTAAGAGAACTGGGTCCAGCCTCTCCCGAGATTTAAGAATGTCAATGCTCTTGTGAAATTTTGTACAGTATGTttctgtgttgtagatatgttttatttttgtcATTCGTGTTATAAGCACGTGCAAAACCACTTTATAATTATGGAATATTTTATTTCTTGCTTCTTTTACAATGGACCGAAAATATTTATGGCCATGAATAAACATTGGCAACTTTTAGCTTTTTtccctttgtttttgttttttgtaaaTACTTTGTGGTAATTATTTGCAACCTAGAAACATGTCAGGATCGTATACGTGGAGATATACATATTTCCAATTCAAAAAGAAGGAAGAATTTCTGGCGGAATTGTCATGACTGTCTAACAGAGCCCATATTATTATGTGAATAACAGGTAAATCGCGCGCTGATGGGGAAATATCCCATTTTTTTATAAGGATTTTAATAAAATGCTGTGTTTCAGAAATTA
>XM_036954953.1
GAGATATTTCAGTTAGAACGAGCTGTTTTAACGCCGGCTACACCACTCAGCCCCTTCCAGTCATCAATCACCAGCAGCGGATTGCCAAACTGGTGCAGCAAATTTCCAGCATACATTTCCCCAGAATATGTCGTTGACCAACACAAAGACCGGCTTTTCTGTGAAGGACATTTTGGACCTCCCTGACACGAATGATGAAGAAGGATCTATCACTGGACCGGAGGAAGATAACGAGGGATCGGAGACGACAAAACCCACTGGAGTTTTGGTACAAAGTCCGCTAGAAAACGTTCAAAATCTGCCTATAAAGAACCGCTTTTATGATAGTAGTGACAATCCTTACACAAGATGGCTTGCCACCACAGACACTCTCCAATATTCACTGCATGGTCTTTCAGCAAGTTCTCAAGACTCAGCCAAGTCCCCAGAACCCTCTGCGGACGAATCGCCAGACAATGACAAGGAAACGTCAAGCAACGGCAGCGACTCCGGTAAGAAGCGAAAAAGAAGAGTGCTGTTTTCCAAGGCACAGACGTACGAACTTGAGCGTCGGTTTAGGCAACAGAGATACCTATCCGCGCCAGAGAGAGAACACCTCGCGAGTTTGATTCGCCTGACACCAACTCAAGTGAAAATTTGGTTCCAGAATCATCGGTACAAAATGAAGAGAGCGCGCGCTGAAAAAGGTATGGAAGTgacccatctcccctctccccggCGGGTGGCCGTACCTGTCTTAGTCAGGGATGGAAAGCCTTGTCATACTCTTAAAGCTCAGGACTTGGCGGCCACTTTTCAGGCTGGATTCCCCCTCTCGGCGTATAGCGCCCAGACCCTTCATCAAATGCAATATAATGCTCAGTACTGCGCCGCCACCACGCCACAATTCCCTTCAGCACATCACTTGGTGCAAACGCAACAGTGGACTTGGTGAACTAGTTGAGACTGACGGGGCTGCTGTTTAGGAGCACGATAGGGATTTCACTAGAAAATAAAGACTTTTCATTTTGCAGCTTGACCCATATCTACCATTTTTTCGGGGCTAATATGTGCGCCGTGTTTACATGTTTTCGTTAAGAGAACTGGGTCCAGCCTCTCCCGAGATTTAAGAATGTCAATGCTCTTGTGAAATTTTGTACAGTATGTttctgtgttgtagatatgttttatttttgtcATTCGTGTTATAAGCACGTGCAAAACCACTTTATAATTATGGAATATTTTATTTCTTGCTTCTTTTACAATGGACCGAAAATATTTATGGCCATGAATAAACATTGGCAACTTTTAGCTTTTTtccctttgtttttgttttttgtaaaTACTTTGTGGTAATTATTTGCAACCTAGAAACATGTCAGGATCGTATACGTGGAGATATACATATTTCCAATTCAAAAAGAAGGAAGAATTTCTGGCGGAATTGTCATGACTGTCTAACAGAGCCCATATTATTATGTGAATAACAGGTAAATCGCGCGCTGATGGGGAAATATCCCATTTTTTTATAAGGATTTTAATAAAATGCTGTGTTTCAGAAATTA

Function

NR:

description
homeobox protein Nkx-2.2a-like isoform X1

GO:

id name namespace
GO:0021530 spinal cord oligodendrocyte cell fate specification biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0014044 Schwann cell development biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0008347 glial cell migration biological_process
GO:0021508 floor plate formation biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K08029 NKX2-2; homeobox protein Nkx-2.2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574574.2 False 3214 mRNA 0.40 3 47417390 47443318
XR_005037761.1 False 1600 mRNA 0.43 4 47421716 47443313
XM_021574575.2 False 1598 mRNA 0.43 3 47422402 47443313
XM_021574573.2 False 2082 mRNA 0.43 2 47440506 47443313
XM_036954953.1 True 1547 mRNA 0.44 3 47440506 47447993

Neighbor

gene id symbol gene type direction distance location
LOC110498030 LOC106577595 coding downstream 23184 47389804 ~ 47394206 (-)
LOC110498370 LOC106577869 coding downstream 244591 46982690 ~ 47172799 (-)
LOC110498027 LOC106583458 coding downstream 456647 46955412 ~ 46960743 (-)
gale gale coding downstream 470586 46941273 ~ 46946804 (-)
zbtb8a zbtb8a coding downstream 476795 46936326 ~ 46940595 (-)
LOC110498033 NA coding upstream 258509 47706502 ~ 47725019 (-)
LOC110498035 LOC106576115 coding upstream 279020 47727013 ~ 47747466 (-)
LOC110498037 LOC106575860 coding upstream 321894 47769887 ~ 47839786 (-)
LOC110498038 LOC106576015 coding upstream 391892 47839885 ~ 47845749 (-)
LOC110498045 LOC106575475 coding upstream 663914 48111907 ~ 48147170 (-)
G1631454 NA non-coding downstream 39989 47352724 ~ 47377401 (-)
G1631345 NA non-coding downstream 104175 47311555 ~ 47313215 (-)
G1631213 NA non-coding downstream 375181 47041992 ~ 47042209 (-)
G1631206 NA non-coding downstream 411495 47005684 ~ 47005895 (-)
G1631205 NA non-coding downstream 415783 47001174 ~ 47001607 (-)
G1631621 NA non-coding upstream 74034 47522027 ~ 47522243 (-)
G1631628 NA non-coding upstream 88874 47536867 ~ 47537092 (-)
G1631638 NA non-coding upstream 108709 47556702 ~ 47556969 (-)
G1631721 NA non-coding upstream 180052 47628045 ~ 47628728 (-)
G1631723 NA non-coding upstream 182915 47630908 ~ 47631112 (-)
G1631120 LOC106612182 other downstream 586740 46830334 ~ 46830650 (-)
G1631005 NA other downstream 787884 46619207 ~ 46629506 (-)
LOC110498001 NA other downstream 1411513 46003765 ~ 46008718 (-)
G1627068 NA other downstream 4008281 43408727 ~ 43409109 (-)
G1626324 NA other downstream 4578956 42759294 ~ 42838434 (-)
G1632192 LOC106575636 other upstream 468302 47916295 ~ 47980466 (-)
G1632228 NA other upstream 520521 47968514 ~ 47970332 (-)
LOC110498375 dlgap2 other upstream 1447537 48812312 ~ 48896302 (-)
LOC110498059 LOC106573685 other upstream 2009101 49457082 ~ 49460760 (-)

Expression


Co-expression Network