LOC110498033


Basic Information

Item Value
gene id LOC110498033
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47706502 ~ 47725019 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469762.2
taaaataatatttttttgttaAACTAGCGGGGCACTGAAATCTTTGCTTTGTGCTAAAGTCAACAGTGGCAAAGTTTGAGCTCAAATAAATGCCGTGATGTCTGCAGCCCTTTGCAGTAGCTGAAGGCGAGGTTCCACAATGGGCTCCGGTAGCTTGCCAGTAAGCATCGACTGTATTGCACAGGTCTCTGCTGGGGAGGGCTCCATGGCTGTGGCGTCGGAGAGGTGCCTTCGGAGAGAGGatggatagggaggagaggaggcctcAATGTAAGGAGGGATAACGAGTAGAGGAGGCCATAATGATACATAGAAGGAGAGTACTGATTCGGACAGAAGAAGCAGATGGATTTGACTGCCACACTCATTGTCCCTTCAGTCGTGGGCTGTGCTGTGACTGCCCCATGGCACCCGCCAGATGGAGATGGCCTAACTTGACTTATGTGTGGAATGGGACCAATGGGATCAATGCAGTCCTGCCTACGACCTTCTCCCCGCATCACCACAGAACCACAGACACATAAAAGGCACTTTCCTCTCTGAGTGCCTATGTCTACCTGGCTACGTCTGCATCTATGAAATATCAAAGCTTGTGTCAGGCAGCGCTGAATAGAGACAAAAAAGAATCACCATTAATGATTAACTGTTCTAAAAGTCCTGGCTTTTTTATTCCCATGGTTCCCGGGTTATCTTGCGGCCATGTGACTTGCTCGCAGTGTTTTTCAAGCAGATTGGGGGAAAGCTAGTGAGCAAACACAGGTGCTTTGGACTGGAGTCGCAGACGCTGTCAGGGACAACCACAAACAAGAGCAGCAATGCCTGGCTAAATGAGAGCCCATCCCCTTACTTACTCCCTGGCTAGCTTAGCTTTGTCACTGACCGCAGTGGCTGGAGATACTCACCACAGCCCAAGTCCAATGTCCTCCTGGTGTTCCACAACTTTTCCCACTCTccaaagaaacaaacaaataaaatgtgaGGATTGAAGCCCACTTGGCATTCGCTCTGGTCTCGAGTATAGAGGGAGAGCAAACAAATGAATGGTGTTCCATTTCTCCCTTTCTAAAACAAACCAAATGGGGTTTTCCTAAAGTGGGGCAATTCCAGTGACCCTGGTGTCAAACAGGGTTCAACACTCCGGTACTTGAGAAGTGTAGtgggaaatgagagagagatctTCAGAAAGGTGCTATGGGTTCTCAGAAATATGCAGGAAGACAATCTGATTCTCAGAAAATGGAGTGGTTGATTTGATTGTTTCATGAATGTTTCATGACAGGAAGATGACGAATAAATCATGAATACATAAAAGCATATTTTCTGTCAACAAAGTATACTTTTTCGTTGTTCTGATTTGATTGAGTTCTGAAAATGTTCTTGAGTTGTTTTCAAGGTTCTATAAACACAGTCTGGGCACTTAACCCTTTTCTTTTCAATAACGTCTGTCCCTTTGTAAAACGACAGAGAGCGTTCTGTAGCACAACTTTGATAACACAATCATATGATATGTTGGCGCTATCTGAACACGGCTTTCCGGCAGCGAGATAAATGAACAGCATGATAACGTGAACAAAAGTGTGGTTCTGATTGGTTGGTCTATGAATAGAAAAAATGCAGCATGGAAAATCTCCACAATAAGGGCAATTCATTAGATTTGTAATTTTCTACAATCTACATGACCAGGGTCAGACAGACAGCTTTTGTTTCAGTCAAATATTTATTTGTGTGTTAGCAAGTCTTTCAGTTCATACCCTGCAATTACAGTGAGCCTGTAAAGCTGAGATGATAAAAGTGTTTAAAAACAAACACTCCAAATCAACAGGAGAGGAAATGAagctggagagagataga
>TU1867030
GGCGAGGTTCCACAATGGGCTCCGGTAGCTTGCCAGTAAGCATCGACTGTATTGCACAGATGGAGATGGCCTAACTTGACTTATGTGTGGAATGGGACCAATGGGATCAATGCAGTCCTGCCTACGACCTTCTCCCCGCATCACCACAGAACCACAGACACATAAAAGGCACTTTCCTCTCTGAGTGCCTATGTCTACCTGGCTACGTCTGCATCTATGAAATATCAAAGCTTGTGTCAGGCAGCGCTGAATAGAGACAAAAAAGAATCACCATTAATGATTAACTGTTCTAAAAGTCCTGGCTTTTTTATTCCCATGGTTCCCGGGTTATCTTGCGGCCATGTGACTTGCTCGCAGTGTTTTTCAAGCAGATTGGGGGAAAGCTAGTGAGCAAACACAGGTGCTTTGGACTGGAGTCGCAGACGCTGTCAGGGACAACCACAAACAAGAGCAGCAATGCCTGGCTAAATGAGAGCCCATCCCCTTACTTACTCCCTGGCTAGCTTAGCTTTGTCACTGACCGCAGTGGCTGGAGATACTCACCACAGCCCAAGTCCAATGTCCTCCTGGTGTTCCACAACTTTTCCCACTCTccaaagaaacaaacaaataaaatgtgaGGATTGAAGCCCACTTGGCATTCGCTCTGGTCTCGAGTATAGAGGGAGAGCAAACAAATGAATGGTGTTCCATTTCTCCCTTTCTAAAACAAACCAAATGGGGTTTTCCTAAAGTGGGGCAATTCCAGTGACCCTGGTGTCAAACAGGGTTCAACACTCCGGTACTTGAGAAGTGTAGtgggaaatgagagagagatctTCAGAAAGGTGCTATGGGTTCTCAGAAATATGCAGGAAGACAATCTGATTCTCAGAAAATGGAGTGGTTGATTTGATTGTTTCATGAATGTTTCATGACAGGAAGATGACGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469762.2 False 1851 mRNA 0.44 3 47706502 47725019
TU1867030 True 931 lncRNA 0.47 2 47707063 47724894

Neighbor

gene id symbol gene type direction distance location
LOC110498031 nx22a coding downstream 258509 47417390 ~ 47447993 (-)
LOC110498030 LOC106577595 coding downstream 312296 47389804 ~ 47394206 (-)
LOC110498370 LOC106577869 coding downstream 533703 46982690 ~ 47172799 (-)
LOC110498027 LOC106583458 coding downstream 745759 46955412 ~ 46960743 (-)
gale gale coding downstream 759698 46941273 ~ 46946804 (-)
LOC110498035 LOC106576115 coding upstream 1994 47727013 ~ 47747466 (-)
LOC110498037 LOC106575860 coding upstream 44868 47769887 ~ 47839786 (-)
LOC110498038 LOC106576015 coding upstream 114866 47839885 ~ 47845749 (-)
LOC110498045 LOC106575475 coding upstream 386888 48111907 ~ 48147170 (-)
LOC118941487 NA coding upstream 857082 48582101 ~ 48592024 (-)
G1631813 NA non-coding downstream 38 47706241 ~ 47706464 (-)
G1631794 NA non-coding downstream 2568 47703561 ~ 47703934 (-)
G1631788 NA non-coding downstream 6603 47699682 ~ 47699899 (-)
G1631783 LOC106613263 non-coding downstream 10038 47696129 ~ 47696464 (-)
G1631781 NA non-coding downstream 10690 47695608 ~ 47695812 (-)
G1632083 NA non-coding upstream 10621 47735640 ~ 47736285 (-)
G1632075 NA non-coding upstream 24741 47749760 ~ 47750706 (-)
G1632099 NA non-coding upstream 53699 47778718 ~ 47849907 (-)
G1632179 icef1 non-coding upstream 174149 47899168 ~ 47901334 (-)
G1632227 NA non-coding upstream 242945 47967964 ~ 47968441 (-)
G1631120 LOC106612182 other downstream 875852 46830334 ~ 46830650 (-)
G1631005 NA other downstream 1076996 46619207 ~ 46629506 (-)
LOC110498001 NA other downstream 1700625 46003765 ~ 46008718 (-)
G1627068 NA other downstream 4297393 43408727 ~ 43409109 (-)
G1626324 NA other downstream 4868068 42759294 ~ 42838434 (-)
G1632192 LOC106575636 other upstream 191276 47916295 ~ 47980466 (-)
G1632228 NA other upstream 243495 47968514 ~ 47970332 (-)
LOC110498375 dlgap2 other upstream 1170511 48812312 ~ 48896302 (-)
LOC110498059 LOC106573685 other upstream 1732075 49457082 ~ 49460760 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location