LOC110498035 (LOC106576115)


Basic Information

Item Value
gene id LOC110498035
gene name LOC106576115
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 47727013 ~ 47747466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574577.2
TCGATGAGTCTCACGCCTAGGTGTGAGGAGATTATTCAAATAGGGCAAGCGAAGAAGTAGGCTAGGGATTGGAGGCTCGACTGGCGCACAGACCTATATCATAGCGTTTACAACCAGCTTTGAACGTCATTTCAACTCCAGTCATCACCAGACGCTTTTCAGCGCCCCTGGGCACGGCTGGCTGAAAGACAGACCACACATGCGCCAGTCCTTGACAGAGCATAGGCTACCATCGACCCGAATACCCCGTGGTCCCAAATCACCGTCTGTTAGAGCGCGTTTTGCCATTTCTTCTGCGGAGAAACGGTTTGAAAACTATTCGGAACTTCCATGATGCTTGGAGCAGTTAAAATGGAAGGACACGAACACACAGACTGGAGCACCTACTACGGAGAGCCCGAGTGTTACTCCTCGGTTGGCAACATGAACACAGGCCTGGGCATGAACTCAATGAACACCTACATGAGCATGTCGGGCATGAGCACCACGGCCAACATGGCAGCCAACTCCATGAACATGTCATACGTGAACACAGCCATGAGCCCCTCCATGGCCGGCATGTCACCAGGCTCTGGAGCCATGAACAGCATGGGCGCGGGCATGACAGCCATGAGCGCTGCGCTCAGCCCCAACATGAGCCCCATGACCGCGCAGCCTCAGTCCATGAACTCCCTAACCTCCTCCTACGCCAACATGAACGCCATGAGCCCCATGTATGGACAGTCCAGCATCAACAGATCTAGGGATCCCAAGACATACCGGAGGAGCTACACTCACGCCAAGCCCCCATACTCTTACATTTCCCTCATCACTATGGCTATACAACAGTCCCCCAGCAAGATGCTAACGCTGGCTGAGATCTATCAGTGGATCATGGACCTTTTCCCGTTCTACCGACAGAACCAGCAACGCTGGCAGAACTCAATTCGCCACTCTCTATCCTTCAATGATTGTTTCCTCAAAGTGCCTCGATCCCCAGATAAGCCTGGAAAGGGCTCGTTTTGGACCCTCCACCCGGATTCGGGGAACATGTTCGAGAACGGCTGCTATCTGAGGAGGCAGAAACGGTTTAAGTGTGCCGGCCAAAAGAAGATGTGCAAGGAGTCGGGTCGGAAGACATCAGAAGGCGGCTCCAACAGCAGCTCGGAGAGTTGCAATGGCAACGAGTCCCCCCATTCCAACCTGTCCCCCAACGACCACAAAAGGTCTCTGTCAGACATGAAGTCGACCCAGGCTCTGAGTCCAGAGCACGCTACCTCACCGGTGTCCCATTCCCAGGCACATGGACACCTCATGTCCCAGCATCACTCGGTCCTCGCACACGAAGCACACCTGAAACCCGAGCATCACTACTCGTTCAACCACCCCTTTTCCATCAACAACCTTATGTCCTCTGAGCAACAGCATCACAAAATGGATCTAAAGACTTACGAGCAGGTGATGCACTATTCCGGCTACGGTTCCCCCATGGCCGGGGCGCTATCCATGGGTTCAATGGGCAAAACGGGCTTAGATTCCTCGTCAATACCCGCTGATGCATCTTACTATCATGGCGTCTACTCCAGGCCTATTATGAACTCCTCATAAACGTTGACCCCAAACCTCAAACAGACCTTTTTCAGCAATTTGTACATTTGTAAAATTATAGTTTGTGCATATTATGTAGGCCTATTCCATATATTTTTGACGTTTCCCACTGATTTAGTTGTCAAGTTGGTTTAGTAATTATTTTGTAAAGGAATGTTAATAATAATGTGTCAAACATCTGTTTAAAAGTCTGCTTTGAGAATGGACCAAAAGATGATTAGCCTACTGTAAAATGCATCTGAATAGcgggaattttaaatgattttaaTGCATTGTGGGAGACTGAAGTTCTTCAATCAATTGTGTAATTCTTATTTATGGCTTGTAAATGTGTATTGTTGTAGTTGACAACAAGAACAGAATCTATATTAAAGTGTTATTTGGATTTTCTTCTGAACACAATggtggattttttttaaaatgtatagcCTACGCAGCAATACAATTATgataataataaaatattaaatatta
>XM_021574578.2
TCGGAGTACTTGCatacattttttcattttttatgtagtgaagtaaaaatcgacagaaatatgaatagtaaagtaaattactgatacccaaaaaaacgacttaagtacaGTAACgaagtatttctactttgcacaacTGTAAAATACATATCCACGTGTTGTAAAATCTACCAGGCGTCAGCAACGCGACCAATATCTGTTTGGTTGAAACGCTATCAATCCTGGGACTATTTGGCGGGGAAGAAAATGGAATGTTCTCGATATCCCGCTGTACTACAGAGAAATAGTTGTTACTCCTCGGTTGGCAACATGAACACAGGCCTGGGCATGAACTCAATGAACACCTACATGAGCATGTCGGGCATGAGCACCACGGCCAACATGGCAGCCAACTCCATGAACATGTCATACGTGAACACAGCCATGAGCCCCTCCATGGCCGGCATGTCACCAGGCTCTGGAGCCATGAACAGCATGGGCGCGGGCATGACAGCCATGAGCGCTGCGCTCAGCCCCAACATGAGCCCCATGACCGCGCAGCCTCAGTCCATGAACTCCCTAACCTCCTCCTACGCCAACATGAACGCCATGAGCCCCATGTATGGACAGTCCAGCATCAACAGATCTAGGGATCCCAAGACATACCGGAGGAGCTACACTCACGCCAAGCCCCCATACTCTTACATTTCCCTCATCACTATGGCTATACAACAGTCCCCCAGCAAGATGCTAACGCTGGCTGAGATCTATCAGTGGATCATGGACCTTTTCCCGTTCTACCGACAGAACCAGCAACGCTGGCAGAACTCAATTCGCCACTCTCTATCCTTCAATGATTGTTTCCTCAAAGTGCCTCGATCCCCAGATAAGCCTGGAAAGGGCTCGTTTTGGACCCTCCACCCGGATTCGGGGAACATGTTCGAGAACGGCTGCTATCTGAGGAGGCAGAAACGGTTTAAGTGTGCCGGCCAAAAGAAGATGTGCAAGGAGTCGGGTCGGAAGACATCAGAAGGCGGCTCCAACAGCAGCTCGGAGAGTTGCAATGGCAACGAGTCCCCCCATTCCAACCTGTCCCCCAACGACCACAAAAGGTCTCTGTCAGACATGAAGTCGACCCAGGCTCTGAGTCCAGAGCACGCTACCTCACCGGTGTCCCATTCCCAGGCACATGGACACCTCATGTCCCAGCATCACTCGGTCCTCGCACACGAAGCACACCTGAAACCCGAGCATCACTACTCGTTCAACCACCCCTTTTCCATCAACAACCTTATGTCCTCTGAGCAACAGCATCACAAAATGGATCTAAAGACTTACGAGCAGGTGATGCACTATTCCGGCTACGGTTCCCCCATGGCCGGGGCGCTATCCATGGGTTCAATGGGCAAAACGGGCTTAGATTCCTCGTCAATACCCGCTGATGCATCTTACTATCATGGCGTCTACTCCAGGCCTATTATGAACTCCTCATAAACGTTGACCCCAAACCTCAAACAGACCTTTTTCAGCAATTTGTACATTTGTAAAATTATAGTTTGTGCATATTATGTAGGCCTATTCCATATATTTTTGACGTTTCCCACTGATTTAGTTGTCAAGTTGGTTTAGTAATTATTTTGTAAAGGAATGTTAATAATAATGTGTCAAACATCTGTTTAAAAGTCTGCTTTGAGAATGGACCAAAAGATGATTAGCCTACTGTAAAATGCATCTGAATAGcgggaattttaaatgattttaaTGCATTGTGGGAGACTGAAGTTCTTCAATCAATTGTGTAATTCTTATTTATGGCTTGTAAATGTGTATTGTTGTAGTTGACAACAAGAACAGAATCTATATTAAAGTGTTATTTGGATTTTCTTCTGAACACAATggtggattttttttaaaatgtatagcCTACGCAGCAATACAATTATgataataataaaatattaaatatta
>XM_036954956.1
ACGTGAACAGGCTCCCGATGGGTGGGGTTTACACGTTAGGACCCTTGGATTTGCCCAAACTGTGTTACTCCTCGGTTGGCAACATGAACACAGGCCTGGGCATGAACTCAATGAACACCTACATGAGCATGTCGGGCATGAGCACCACGGCCAACATGGCAGCCAACTCCATGAACATGTCATACGTGAACACAGCCATGAGCCCCTCCATGGCCGGCATGTCACCAGGCTCTGGAGCCATGAACAGCATGGGCGCGGGCATGACAGCCATGAGCGCTGCGCTCAGCCCCAACATGAGCCCCATGACCGCGCAGCCTCAGTCCATGAACTCCCTAACCTCCTCCTACGCCAACATGAACGCCATGAGCCCCATGTATGGACAGTCCAGCATCAACAGATCTAGGGATCCCAAGACATACCGGAGGAGCTACACTCACGCCAAGCCCCCATACTCTTACATTTCCCTCATCACTATGGCTATACAACAGTCCCCCAGCAAGATGCTAACGCTGGCTGAGATCTATCAGTGGATCATGGACCTTTTCCCGTTCTACCGACAGAACCAGCAACGCTGGCAGAACTCAATTCGCCACTCTCTATCCTTCAATGATTGTTTCCTCAAAGTGCCTCGATCCCCAGATAAGCCTGGAAAGGGCTCGTTTTGGACCCTCCACCCGGATTCGGGGAACATGTTCGAGAACGGCTGCTATCTGAGGAGGCAGAAACGGTTTAAGTGTGCCGGCCAAAAGAAGATGTGCAAGGAGTCGGGTCGGAAGACATCAGAAGGCGGCTCCAACAGCAGCTCGGAGAGTTGCAATGGCAACGAGTCCCCCCATTCCAACCTGTCCCCCAACGACCACAAAAGGTCTCTGTCAGACATGAAGTCGACCCAGGCTCTGAGTCCAGAGCACGCTACCTCACCGGTGTCCCATTCCCAGGCACATGGACACCTCATGTCCCAGCATCACTCGGTCCTCGCACACGAAGCACACCTGAAACCCGAGCATCACTACTCGTTCAACCACCCCTTTTCCATCAACAACCTTATGTCCTCTGAGCAACAGCATCACAAAATGGATCTAAAGACTTACGAGCAGGTGATGCACTATTCCGGCTACGGTTCCCCCATGGCCGGGGCGCTATCCATGGGTTCAATGGGCAAAACGGGCTTAGATTCCTCGTCAATACCCGCTGATGCATCTTACTATCATGGCGTCTACTCCAGGCCTATTATGAACTCCTCATAAACGTTGACCCCAAACCTCAAACAGACCTTTTTCAGCAATTTGTACATTTGTAAAATTATAGTTTGTGCATATTATGTAGGCCTATTCCATATATTTTTGACGTTTCCCACTGATTTAGTTGTCAAGTTGGTTTAGTAATTATTTTGTAAAGGAATGTTAATAATAATGTGTCAAACATCTGTTTAAAAGTCTGCTTTGAGAATGGACCAAAAGATGATTAGCCTACTGTAAAATGCATCTGAATAGcgggaattttaaatgattttaaTGCATTGTGGGAGACTGAAGTTCTTCAATCAATTGTGTAATTCTTATTTATGGCTTGTAAATGTGTATTGTTGTAGTTGACAACAAGAACAGAATCTATATTAAAGTGTTATTTGGATTTTCTTCTGAACACAATggtggattttttttaaaatgtatagcCTACGCAGCAATACAATTATgataataataaaatattaaatatta

Function

NR:

description
hepatocyte nuclear factor 3-beta-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K08035 FOXA2, HNF3B; forkhead box protein A2, hepatocyte nuclear factor 3-beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574577.2 False 2061 mRNA 0.48 2 47727013 47729833
XM_021574578.2 False 1947 mRNA 0.45 2 47727013 47747227
XM_036954956.1 True 1721 mRNA 0.47 2 47727013 47747466

Neighbor

gene id symbol gene type direction distance location
LOC110498033 NA coding downstream 1994 47706502 ~ 47725019 (-)
LOC110498031 nx22a coding downstream 279020 47417390 ~ 47447993 (-)
LOC110498030 LOC106577595 coding downstream 332807 47389804 ~ 47394206 (-)
LOC110498370 LOC106577869 coding downstream 554214 46982690 ~ 47172799 (-)
LOC110498027 LOC106583458 coding downstream 766270 46955412 ~ 46960743 (-)
LOC110498037 LOC106575860 coding upstream 22421 47769887 ~ 47839786 (-)
LOC110498038 LOC106576015 coding upstream 92419 47839885 ~ 47845749 (-)
LOC110498045 LOC106575475 coding upstream 364441 48111907 ~ 48147170 (-)
LOC118941487 NA coding upstream 834635 48582101 ~ 48592024 (-)
LOC110498047 LOC106574998 coding upstream 932713 48680179 ~ 48683751 (-)
G1631813 NA non-coding downstream 20549 47706241 ~ 47706464 (-)
G1631794 NA non-coding downstream 23079 47703561 ~ 47703934 (-)
G1631788 NA non-coding downstream 27114 47699682 ~ 47699899 (-)
G1631783 LOC106613263 non-coding downstream 30549 47696129 ~ 47696464 (-)
G1632075 NA non-coding upstream 2294 47749760 ~ 47750706 (-)
G1632099 NA non-coding upstream 31252 47778718 ~ 47849907 (-)
G1632179 icef1 non-coding upstream 151702 47899168 ~ 47901334 (-)
G1632227 NA non-coding upstream 220498 47967964 ~ 47968441 (-)
G1632192 LOC106575636 non-coding upstream 230240 47916295 ~ 47980466 (-)
G1631120 LOC106612182 other downstream 896363 46830334 ~ 46830650 (-)
G1631005 NA other downstream 1097507 46619207 ~ 46629506 (-)
LOC110498001 NA other downstream 1721136 46003765 ~ 46008718 (-)
G1627068 NA other downstream 4317904 43408727 ~ 43409109 (-)
G1626324 NA other downstream 4888579 42759294 ~ 42838434 (-)
G1632228 NA other upstream 221048 47968514 ~ 47970332 (-)
LOC110498375 dlgap2 other upstream 1148064 48812312 ~ 48896302 (-)
LOC110498059 LOC106573685 other upstream 1709628 49457082 ~ 49460760 (-)

Expression


Co-expression Network