Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110498040 |
| gene name | LOC106575182 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 48008094 ~ 48111647 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: T-lymphoma invasion and metastasis-inducing protein 2-like isoform X2 |
| id | description |
|---|---|
| K05731 | TIAM1; T-lymphoma invasion and metastasis-inducing protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036954960.1 | False | 7318 | mRNA | 0.55 | 27 | 48008094 | 48111647 |
| XM_036954962.1 | False | 7267 | mRNA | 0.55 | 26 | 48008094 | 48111647 |
| XM_036954958.1 | False | 7320 | mRNA | 0.55 | 27 | 48008095 | 48111647 |
| XM_036954959.1 | False | 7257 | mRNA | 0.55 | 27 | 48035486 | 48111647 |
| XM_036954963.1 | True | 4155 | mRNA | 0.53 | 13 | 48091388 | 48111647 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110498039 | LOC106575636 | coding | upstream | 26788 | 47938145 ~ 47981306 (+) |
| LOC110498042 | icef1 | coding | upstream | 70143 | 47861863 ~ 47937951 (+) |
| LOC118941362 | LOC106568776 | coding | upstream | 242593 | 47764384 ~ 47765501 (+) |
| LOC110498032 | LOC106577542 | coding | upstream | 488440 | 47514824 ~ 47519654 (+) |
| LOC110498029 | NA | coding | upstream | 669875 | 47280667 ~ 47338219 (+) |
| LOC110498044 | LOC106575475 | coding | downstream | 10578 | 48122225 ~ 48129380 (+) |
| LOC118941486 | NA | coding | downstream | 49106 | 48160753 ~ 48166744 (+) |
| LOC110498372 | LOC106575065 | coding | downstream | 139465 | 48251112 ~ 48583066 (+) |
| LOC110498048 | NA | coding | downstream | 449919 | 48561566 ~ 48564328 (+) |
| LOC110498046 | LOC106574720 | coding | downstream | 477297 | 48588944 ~ 48678169 (+) |
| G1631988 | NA | non-coding | upstream | 2052 | 48005725 ~ 48006042 (+) |
| G1631975 | NA | non-coding | upstream | 48810 | 47956780 ~ 47959284 (+) |
| G1631918 | NA | non-coding | upstream | 162362 | 47845061 ~ 47845732 (+) |
| G1631857 | LOC106575860 | non-coding | upstream | 235123 | 47772701 ~ 47772971 (+) |
| G1631840 | NA | non-coding | upstream | 236226 | 47771439 ~ 47771868 (+) |
| G1632372 | NA | non-coding | downstream | 89272 | 48200919 ~ 48201175 (+) |
| G1632373 | NA | non-coding | downstream | 122675 | 48234322 ~ 48234619 (+) |
| G1632402 | NA | non-coding | downstream | 145527 | 48257174 ~ 48257474 (+) |
| G1632405 | NA | non-coding | downstream | 148788 | 48260435 ~ 48260654 (+) |
| G1631844 | NA | other | upstream | 259012 | 47747697 ~ 47749082 (+) |
| G1631702 | NA | other | upstream | 346859 | 47660126 ~ 47661235 (+) |
| LOC110498004 | LOC106580093 | other | upstream | 1748446 | 46257919 ~ 46318609 (+) |
| G1629912 | NA | other | upstream | 1782274 | 46225382 ~ 46225820 (+) |
| G1629779 | LOC106580335 | other | upstream | 1991455 | 46013724 ~ 46016639 (+) |
| G1632650 | arhgef10 | other | downstream | 587410 | 48699057 ~ 48700568 (+) |
| zgc:193593 | NA | other | downstream | 1052307 | 49160705 ~ 49178402 (+) |
