LOC118941487


Basic Information

Item Value
gene id LOC118941487
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 48582101 ~ 48592024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037762.1
TTGTTAAGCATCTAGTAATAAACAACATGTCAAAGAGCTCGTATGAGAACTGGAGACATTTTAGAAGAGGGTAAACCAGTCTAGGCATGGGGAAATCTAGAACAAGAGAGGAAGCAATGAAGAAAGAGCTGgtggcgacaggCATCTCTGCGTGCCAGGATGATATCTCAGCTTGGACATCGGCCCACcatcaagctcaacctcgacaagacagAACTGCTCTTCCACCCGGGGAAGGCATGCCCGCTCAAAGACCTCTACAtcatggttgacaactccacagtgtcacCCTCCCAGTGCAAATAACCTTGGTGCGACCCTGAACACCCAGTCGTTCTCTGCAAATATCAAAAAAGTGACCctctcctgcaggttcatgctctacaacatccatagAGTACGACCCTGCCTTACACAGGAAGCGGTGCAGGTCCTAATTCAGGCACTTGTTCTGTCccacctggactactgcaactcgctgttagCTGGGCTCCccacttgtgccatcaaacccctgcaacttatccagaacgttGCGGCCCGCCTGGTTTTCAACcatgtcacccctctcctccGCACATTCCACTTAATGCCCTTTAAGTGTAagaactgtttgaaaagactgcctgaaatttcagactgttttggtgggatggagttttggcctgcctggtgaaatCACCAGGCGGTTAATtaattaatagaccaataagagagatagttccaaacctctctgccaattacaggtagttttcagttttcccctccccactcagaccacctCCAGATAGTCCTAGCAGagttcttgcttgagaaattgctctttgctaagaagctatttttgtttctttttgaccattttaattgaaaacaatcacattaaggtacttaattgttacccagaaatgatttgatattgagataaaaaaaaaaatggctgcattgggcctttaacaatatgagagcttgggactataaaGTTCTATCTCCAATTGAATCAACAtattgttctgttcaatgttctctatcTATACAgggtgcgtttgtaaattcactctggctatctactctgatttcagagtgTGCCAGGGCACAGAATAACCGGGGAATTTACGAACACCCGTTGAAAAGGGCCGTTGTCattaaacgttggcaaaaaaaacgtaattcaattgttgctagcagcacagttacagtcaccagtGTGCACTCTTTTTGCAGATAGAACGTCACAGTCTCAAGCTCTCAAATAGTCAATGTACATTTCATTCATAACATGCTGGAACACAGAGTATAAATATGTATATCAAGTCAAAGACAGTCAATGAGTCAGAAGAAAAAAGGCAGATTTACAATGAGTTGtcatattttgtgtgtgttgtgggttCTTTTCTGAGGTTTATTTTTGAACTACATTGTCTTGGCTCAAAAATATACCCATTTACATGAATGGAGGACatacaataaaataaatatattcacaAGTTCTGTAACCTCAGCGAGTTATCCCTGACCCTGGCACTTTCACGTTTGATGACCAAATATTGTTTTGATCAGCTTGAAGCTATGGTACAATGCGTAGAGGAACGTTATACATACAGAGACCTACACAACCTCCAGGTTCAAATATCTGACCccaataacaaaataacaataacaaatctcACCAATAATAAAAAGTAGTTGTAATAATCTGAAACTTGTTTTGATAGTGAATGTAAAGTGAAAGTGGTTCCAATGTACaacagtctatatacagtatatagtgccaACTTGAGataaaaaaggaaataaaacaaatGCAACACAA
>TU1868837
tcacaAGTTCTGTAACCTCAGCGAGTTATCCCTGACCCTGGCACTTTCACGTTTGATGACCAAATATTGTTTTGATCAGCTTGAAGCTATGGTACAATGCGTAGAGGAACGTTATACATACAGAGACCTACACAACCTCCAGGTTCAAATATCTGACCccaataacaaaataacaataacaaatctcACCAATAATAAAAAGTAGTTGTAATAATCTGAAACTTGTTTTGATAGTGAATGTAAAGTGAAAGTGGTTCCAATGTACaacagtctatatacagtatatagtgccaACTTGAGataaaaaaggaaataaaacaaatGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037762.1 False 1810 mRNA 0.41 2 48582101 48592024
TU1868837 True 326 lncRNA 0.35 1 48582107 48582432

Neighbor

gene id symbol gene type direction distance location
LOC110498045 LOC106575475 coding downstream 434959 48111907 ~ 48147170 (-)
LOC110498038 LOC106576015 coding downstream 736352 47839885 ~ 47845749 (-)
LOC110498037 LOC106575860 coding downstream 742315 47769887 ~ 47839786 (-)
LOC110498035 LOC106576115 coding downstream 834635 47727013 ~ 47747466 (-)
LOC110498033 NA coding downstream 857082 47706502 ~ 47725019 (-)
LOC110498047 LOC106574998 coding upstream 88155 48680179 ~ 48683751 (-)
LOC110498049 kbtbd11 coding upstream 92523 48684547 ~ 48696699 (-)
LOC110498373 arhgef10 coding upstream 106980 48699004 ~ 48779451 (-)
LOC110498052 cln8 coding upstream 201214 48791774 ~ 48806154 (-)
LOC110498375 dlgap2 coding upstream 220288 48812312 ~ 48896302 (-)
G1633415 NA non-coding downstream 4605 48577175 ~ 48577496 (-)
G1633414 NA non-coding downstream 5654 48576237 ~ 48576447 (-)
G1633412 NA non-coding downstream 7959 48573921 ~ 48574142 (-)
G1633411 NA non-coding downstream 10118 48571758 ~ 48571983 (-)
G1633408 LOC106575065 non-coding downstream 14728 48566831 ~ 48567373 (-)
G1633520 NA non-coding upstream 192322 48784346 ~ 48837476 (-)
G1633525 NA non-coding upstream 198662 48790686 ~ 48791280 (-)
G1633560 NA non-coding upstream 262568 48854592 ~ 48855059 (-)
G1632192 LOC106575636 other downstream 601635 47916295 ~ 47980466 (-)
G1632228 NA other downstream 611769 47968514 ~ 47970332 (-)
G1631120 LOC106612182 other downstream 1751451 46830334 ~ 46830650 (-)
G1631005 NA other downstream 1952595 46619207 ~ 46629506 (-)
LOC110498059 LOC106573685 other upstream 865070 49457082 ~ 49460760 (-)
G1633961 NA other upstream 967013 49559037 ~ 49560131 (-)
G1634391 NA other upstream 1163687 49755711 ~ 49827902 (-)
LOC110498073 NA other upstream 1598637 50190657 ~ 50193142 (-)
G1633426 NA non-coding upstream 5753 48588185 ~ 48588387 (-)

Expression


Co-expression Network