Item | Value |
---|---|
gene id | LOC110498052 |
gene name | cln8 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048583.1 |
NCBI id | CM023237.2 |
chromosome length | 67237266 |
location | 48791774 ~ 48806154 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
cln8 | Predicted to enable ceramide binding activity. Predicted to be involved in lipid homeostasis; nervous system development; and phospholipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 8 and neuronal ceroid lipofuscinosis 8 northern epilepsy variant. Orthologous to human CLN8 (CLN8 transmembrane ER and ERGIC protein). |
description |
---|
unnamed protein product |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021574614.2 | False | 3854 | mRNA | 0.46 | 3 | 48793238 | 48802512 |
XM_021574612.2 | False | 6438 | mRNA | 0.42 | 4 | 48793238 | 48806149 |
XM_021574615.2 | False | 6281 | mRNA | 0.43 | 3 | 48793238 | 48806153 |
XM_021574616.2 | False | 6249 | mRNA | 0.43 | 3 | 48793238 | 48806154 |
TU1868960 | False | 3603 | lncRNA | 0.43 | 2 | 48791774 | 48802663 |
TU1868955 | True | 2478 | lncRNA | 0.42 | 2 | 48792031 | 48794529 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110498373 | arhgef10 | coding | downstream | 13787 | 48699004 ~ 48779451 (-) |
LOC110498049 | kbtbd11 | coding | downstream | 96539 | 48684547 ~ 48696699 (-) |
LOC110498047 | LOC106574998 | coding | downstream | 109487 | 48680179 ~ 48683751 (-) |
LOC118941487 | NA | coding | downstream | 201214 | 48582101 ~ 48592024 (-) |
LOC110498045 | LOC106575475 | coding | downstream | 646096 | 48111907 ~ 48147170 (-) |
LOC110498375 | dlgap2 | coding | upstream | 6158 | 48812312 ~ 48896302 (-) |
LOC110498058 | LOC106573748 | coding | upstream | 560753 | 49366907 ~ 49455407 (-) |
LOC110498059 | LOC106573685 | coding | upstream | 650928 | 49457082 ~ 49460760 (-) |
LOC110498060 | LOC106573624 | coding | upstream | 659003 | 49465157 ~ 49469989 (-) |
LOC110498061 | LOC106573499 | coding | upstream | 669519 | 49475673 ~ 49523365 (-) |
G1633525 | NA | non-coding | downstream | 1958 | 48790686 ~ 48791280 (-) |
G1633426 | NA | non-coding | downstream | 204851 | 48588185 ~ 48588387 (-) |
G1633415 | NA | non-coding | downstream | 215742 | 48577175 ~ 48577496 (-) |
G1633560 | NA | non-coding | upstream | 48438 | 48854592 ~ 48855059 (-) |
G1633581 | NA | non-coding | upstream | 76269 | 48882423 ~ 48882855 (-) |
G1633590 | NA | non-coding | upstream | 92029 | 48898183 ~ 48898383 (-) |
G1633592 | NA | non-coding | upstream | 94103 | 48900257 ~ 48909682 (-) |
G1633601 | NA | non-coding | upstream | 108841 | 48914995 ~ 48915242 (-) |
G1632192 | LOC106575636 | other | downstream | 812772 | 47916295 ~ 47980466 (-) |
G1632228 | NA | other | downstream | 822906 | 47968514 ~ 47970332 (-) |
G1631120 | LOC106612182 | other | downstream | 1962588 | 46830334 ~ 46830650 (-) |
G1631005 | NA | other | downstream | 2163732 | 46619207 ~ 46629506 (-) |
G1633961 | NA | other | upstream | 752883 | 49559037 ~ 49560131 (-) |
G1634391 | NA | other | upstream | 949557 | 49755711 ~ 49827902 (-) |
LOC110498073 | NA | other | upstream | 1384507 | 50190657 ~ 50193142 (-) |