si:ch211-195o20.7 (LOC106574021)


Basic Information

Item Value
gene id si:ch211-195o20.7
gene name LOC106574021
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 49171450 ~ 49192439 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036954992.1
ATCTGGTAGGTTGCAAACGCTGGTAGGACAGCCCAACTATGCTCCCTAGTGGTCAAGGCCCGAATTTAAAGGACATCAGAGAAGAATGGATCAAAGTTAGAGAAAGTTAGGCCTGTATAAAGTTGATAAAGATGCATTCAGTTCTGTTAGAAAATAATCACATTGCATATTGGGTGTTTTCATGAGAGAAACAGGAGTTTATATGTCTACTTCACCGAGAACAAGTGGAGTTGGTGCACTTGGCTACTTCGTCCCGACTCTTTCGTTGTGCTCAACCCCACCGCATTGACAAAGACGGATCCAATGCGCGGTAGGCTACAGAGGGAAGAAAGGACAACACACGAACTATATTTCCACGAGGAGGAAAATAAATCGATAAAAAAAAGAAATTATTCTACTTTAAAGGTCTCCTCTGCAGCCTCTGCTCTGTCCTGACTGAGAGCCACTGGTGTGTTGCCCACTTTCTCACTGCATCATGGGTACCTTCTCCAGCAAGGACGGCCATGGACCCGCAGGGCCCAGCTTGGATTTGTTCCAAACCCCTCCTACTTCTCCAGTGACCTCCACCCTGCCTGCTCTCACTCCGATCACACCCTCTACACCAGGCCAGCCAGCAGCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAATACCAGTCACATCCCTAGCACCAGTCACAGCCCTAGCCCCAACTCCAGCACCAGTCACAGCACCAGTTACTGCCCTAGCCCCAGCCCTAAGTGGGAAGAGACTCCTGCCCGTCAGCCCAGGCTACTCTGTGATTGGTCCTGGGTTTATCTCCCTGCAAGGAAGGACAGGAAGTAATGCAGCAGTGCCTGAAGGGGTGGTTGTGATGGGGTGTAATGGAGGCCCCACCAGGTCTAGTCCCAGGTTCCCTGTACCCCAGGGGAAGAGCTCATCGATGAGCCCCACCAAGACTCCTTCATCCCTGGGTAGCTCCCTGTCCTCGGCCAGCCCGATTAGCCTGGTCAACCCCTCGGGGCAGAGCGAGAAGGACAGTGGGCTGAGCCTGACCACGCTGGAGCACCATGGGTCTGCGGACAACCAGGGTGAGATTGAGAGGCTGGTGGAGGAGTGTAGGACAGCACTGGGTCTCAGTCCCAGTCAGTATGCAACACTAAACAGCGCAGATGTGTTGAAGCATCTGCTAGTGGAGCGCCAGGAGTTGACCGCTGAGGTCCAGAGTCTGCGGGAGACCATGCAGACGGAGCGAGTGGAGTGGAACCAGTTCCAGTCTGACCTGCAGGTGGCGGTAGCAGTGGCCGACCGACTGAGGGCCGAGGCCGAGGAGGAGCTGAACACGCTCAGAGCGGCTCAGATGGATACAGAGCGGGAGCTGGAGGCTGCCcagcagagacagaaagagactgaTGGGCAGCTGGTCAGCCTGAGAGGAGATCTGAGGGAGAGCAGGCAGAAACTGGTCCACCTCACCCAGAACCAGGGACCAGGACAGGCCCAGGCTCAAGCCAAGACCCAGGGCATGGAGAGGGCTACTGGGGAGACCAGCACACTGGAGACCCAGGAGGGGACACAccggggaagggagagggggatcaGCAGGTTTGGCCGAGGAAGAGGAGATGACAAGATGGAGAAGATGAGTCAGGAAGAAGGGAATAAGAATATAAGTGTGAAAGAGGCTCGAACGGACATTAAGGGTGTGGCCAACAGGTACTTGAGGAACGTGAccaatgaggagaggagtggagaggaagggtgTAGCATGAGGGAGACACAGAGGATAGTCACACAGGAGAGGGCAAGAAGCCTTTCCAGACTACCCGCATCTTCAGACTCCCCTGCTGTAATGAATGGAACATCCCAGTCCAATACTGCCACAATAGCTGGATCTACAAACAAGAGCCAAAGTCAAACCAGAGGAAGAAAAGGGCTAGAATGGCAAGACAGCTGGTTCAGCACTCACAcagGGAAACGGGAGGAGGCATTGAACCAGTACAACTCTGCCCTGGCAGAGCTGCCCCCAAACACGACCTCTAAGACCAGGTCTCAGGATGGCTTTAATCTACTGCTACGCCGCCATGGAGGCTCCAAGAGGAACTCTCTTCTGCGCTGGTGTCAGAGCCGCACTCAGGGCTACAAGAGCGAGAACCTCAGCCTGGCATTTAAGACGGGAGAGAATGTTGGAATCACAACATCACTGACCATGGAGGAGATGCTGAGGGCCGGAGGACCAGACTGGCAAAGAGTTCTGGGATATGTGGAGTGCATGTATCGTCACTTTGAGATGTAACGCCCAGGACACTGTGCTTGAGGGAAACCTCGGCGGGAGGTACAGTTCACTGCTATTGGTGGAAGGATGGGGAGTGGGAGTCACTCCTCTACTAGCTGATATGGTCATTGACAGCCATGTAGAGAAAGTTAGGCTTTGTTGGCACAACAGAGCCCCCTTCTGGTCAAGAGTGCAGGTGCAGGTTGCTGTAAATGTCTACACTGGGACCCCATCAGAAGGTTACACAAAGTAACTGATCTTATCATACCAAACCTTTGCTTGACTCCTAAACTTTTTCTCAGCAGTGCAATCTAAAGCTGCTGATCTGTGTCCAGTGCCTTTAGTACCACAGTCTTCCATTTAAAACATGTTCATGTTTTCTGTCCGTTTTAGCACTCTGTAAATATGCACTTTTAATAAGCACTTTGATGATTGTAATTTAAAGGAGGAAGGGGGAAAGGGAGTGTATGGATGCAGTCTCCCTGTCTAGCAATCCATTGATTCTTATATGTAACTAAAATGTGAACGCTGACTATGTTGCCAAAGATGCAGAATAAATAAAATGGGCAATATAAAGCTAACGA
>XM_021574619.2
TCTGGTAGGTTGCAAACGCTGGTAGGACAGCCCAACTATGCTCCCTAGTGGTCAAGGCCCGAATTTAAAGGACATCAGAGAAGAATGGATCAAAGTTAGAGAAAGTTAGGCCTGTATAAAGTTGATAAAGATGCATTCAGTTCTGTTAGAAAATAATCACATTGCATATTGGGTGTTTTCATGAGAGAAACAGGAGTTTATATGTCTACTTCACCGAGAACAAGTGGAGTTGGTGCACTTGGCTACTTCGTCCCGACTCTTTCGTTGTGCTCAACCCCACCGCATTGACAAAGACGGATCCAATGCGCGGTAGGCTACAGAGGGAAGAAAGGACAACACACGAACTATATTTCCACGAGGAGGAAAATAAATCGATAAAAAAAAGAAATTATTCTACTTTAAAGGTCTCCTCTGCAGCCTCTGCTCTGTCCTGACTGAGAGCCACTGGTGTGTTGCCCACTTTCTCACTGCATCATGGGTACCTTCTCCAGCAAGGACGGCCATGGACCCGCAGGGCCCAGCTTGGATTTGTTCCAAACCCCTCCTACTTCTCCAGTGACCTCCACCCTGCCTGCTCTCACTCCGATCACACCCTCTACACCAGGCCAGCCAGCAGCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAGCACCAGTCACAGCCCTATCCCCAATACCAGTCACATCCCTAGCACCAGTCACAGCCCTAGCCCCAACTCCAGCACCAGTCACAGCACCAGTTACTGCCCTAGCCCCAGCCCTAAGTGGGAAGAGACTCCTGCCCGTCAGCCCAGGCTACTCTGTGATTGGTCCTGGGTTTATCTCCCTGCAAGGAAGGACAGGAAGTAATGCAGCAGTGCCTGAAGGGGTGGTTGTGATGGGGTGTAATGGAGGCCCCACCAGGTCTAGTCCCAGGTTCCCTGTACCCCAGGGGAAGAGCTCATCGATGAGCCCCACCAAGACTCCTTCATCCCTGGGTAGCTCCCTGTCCTCGGCCAGCCCGATTAGCCTGGTCAACCCCTCGGGGCAGAGCGAGAAGGACAGTGGGCTGAGCCTGACCACGCTGGAGCACCATGGGTCTGCGGACAACCAGGGTGAGATTGAGAGGCTGGTGGAGGAGTGTAGGACAGCACTGGGTCTCAGTCCCAGTCAGTATGCAACACTAAACAGCGCAGATGTGTTGAAGCATCTGCTAGTGGAGCGCCAGGAGTTGACCGCTGAGGTCCAGAGTCTGCGGGAGACCATGCAGACGGAGCGAGTGGAGTGGAACCAGTTCCAGTCTGACCTGCAGGTGGCGGTAGCAGTGGCCGACCGACTGAGGGCCGAGGCCGAGGAGGAGCTGAACACGCTCAGAGCGGCTCAGATGGATACAGAGCGGGAGCTGGAGGCTGCCcagcagagacagaaagagactgaTGGGCAGCTGGTCAGCCTGAGAGGAGATCTGAGGGAGAGCAGGCAGAAACTGGTCCACCTCACCCAGAACCAGGGACCAGGACAGGCCCAGGCTCAAGCCAAGACCCAGGGCATGGAGAGGGCTACTGGGGAGACCAGCACACTGGAGACCCAGGAGGGGACACAccggggaagggagagggggatcaGCAGGTTTGGCCGAGGAAGAGGAGATGACAAGATGGAGAAGATGAGTCAGGAAGAAGGGAATAAGAATATAAGTGTGAAAGAGGCTCGAACGGACATTAAGGGTGTGGCCAACAGGTACTTGAGGAACGTGAccaatgaggagaggagtggagaggaagggtgTAGCATGAGGGAGACACAGAGGATAGTCACACAGGAGAGGGCAAGAAGCCTTTCCAGACTACCCGCATCTTCAGACTCCCCTGCTGTAATGAATGGAACATCCCAGTCCAATACTGCCACAATAGCTGGATCTACAAACAAGAGCCAAAGTCAAACCAGAGGAAGAAAAGGGCTAGAATGGCAAGACAGCTGGTTCAGCACTCACAcagGGAAACGGGAGGAGGCATTGAACCAGTACAACTCTGCCCTGGCAGAGCTGCCCCCAAACACGACCTCTAAGACCAGGTCTCAGGATGGCTTTAATCTACTGCTACGCCGCCATGGAGGCTCCAAGAGGAACTCTCTTCTGCGCTGGTGTCAGAGCCGCACTCAGGGCTACAAGAATATTGACATCACTAACTTCAGCAGTAGCTGGGCGGATGGTCTTGCCTTCTGTGCTGTGTACCACACCTACCTCCCTTCACACATCCCCTACTGCACCCTTAGCCCTGACAACAAGAGCGAGAACCTCAGCCTGGCATTTAAGACGGGAGAGAATGTTGGAATCACAACATCACTGACCATGGAGGAGATGCTGAGGGCCGGAGGACCAGACTGGCAAAGAGTTCTGGGATATGTGGAGTGCATGTATCGTCACTTTGAGATGTAACGCCCAGGACACTGTGCTTGAGGGAAACCTCGGCGGGAGGTACAGTTCACTGCTATTGGTGGAAGGATGGGGAGTGGGAGTCACTCCTCTACTAGCTGATATGGTCATTGACAGCCATGTAGAGAAAGTTAGGCTTTGTTGGCACAACAGAGCCCCCTTCTGGTCAAGAGTGCAGGTGCAGGTTGCTGTAAATGTCTACACTGGGACCCCATCAGAAGGTTACACAAAGTAACTGATCTTATCATACCAAACCTTTGCTTGACTCCTAAACTTTTTCTCAGCAGTGCAATCTAAAGCTGCTGATCTGTGTCCAGTGCCTTTAGTACCACAGTCTTCCATTTAAAACATGTTCATGTTTTCTGTCCGTTTTAGCACTCTGTAAATATGCACTTTTAATAAGCACTTTGATGATTGTAATTTAAAGGAGGAAGGGGGAAAGGGAGTGTATGGATGCAGTCTCCCTGTCTAGCAATCCATTGATTCTTATATGTAACTAAAATGTGAACGCTGACTATGTTGCCAAAGATGCAGAATAAATAAAATGGGCAATATAAAGCTAACGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K23028 SPECC1; cytospin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036954992.1 False 3003 mRNA 0.53 10 49171450 49192439
XM_021574619.2 True 3119 mRNA 0.53 11 49171451 49192439

Neighbor

gene id symbol gene type direction distance location
zgc:193593 NA coding upstream 3904 49160705 ~ 49178402 (+)
LOC110498053 erich1 coding upstream 16448 49129670 ~ 49155002 (+)
LOC110498051 NA coding upstream 379048 48787219 ~ 48792402 (+)
LOC110498046 LOC106574720 coding upstream 493281 48588944 ~ 48678169 (+)
LOC110498372 LOC106575065 coding upstream 588902 48251112 ~ 48583066 (+)
LOC110498056 LOC106573945 coding downstream 7654 49200093 ~ 49218555 (+)
LOC110498063 LOC106573328 coding downstream 373417 49565856 ~ 49611711 (+)
LOC110498066 LOC106573019 coding downstream 562529 49754968 ~ 49926745 (+)
LOC110498067 LOC106572928 coding downstream 735265 49927704 ~ 50024509 (+)
zgc:113142 LOC106570820 coding downstream 845326 50037765 ~ 50068382 (+)
G1632870 NA non-coding upstream 58812 49111942 ~ 49112638 (+)
G1632778 NA non-coding upstream 223962 48947289 ~ 48947488 (+)
G1632774 NA non-coding upstream 229462 48941749 ~ 48941988 (+)
G1632772 NA non-coding upstream 233938 48937311 ~ 48937512 (+)
G1633019 NA non-coding downstream 134224 49326663 ~ 49370871 (+)
G1633072 NA non-coding downstream 213040 49405479 ~ 49407939 (+)
G1633087 LOC106573748 non-coding downstream 233872 49426311 ~ 49453984 (+)
G1633107 NA non-coding downstream 264643 49457082 ~ 49458853 (+)
G1632650 arhgef10 other upstream 470882 48699057 ~ 48700568 (+)
LOC110498044 LOC106575475 other upstream 1042070 48122225 ~ 48129380 (+)
G1631844 NA other upstream 1422368 47747697 ~ 47749082 (+)
LOC110498072 NA other downstream 971400 50163645 ~ 50168749 (+)
LOC110498078 LOC106572417 other downstream 1051180 50243497 ~ 50265945 (+)
G1634948 NA other downstream 1414947 50607386 ~ 50610479 (+)
hnrnpua hnrnpu other downstream 3382494 52561723 ~ 52576154 (+)
G1637065 NA other downstream 3558161 52750600 ~ 52755474 (+)

Expression


Co-expression Network