LOC110498063 (LOC106573328)


Basic Information

Item Value
gene id LOC110498063
gene name LOC106573328
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 49565856 ~ 49611711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574629.2
TCACTGTACGCTACGTAAGTATTTATTTGAACATTTGCGGAATTAAAATAACATCCAGCGAGGTGATGGATAAACAGTTTATTTGTAAAATCTCACAATAAACGTAACGCTTTCAAGCAATAATAATACGCTTGCAACATACGTGGGACATGGAGGACGATGCACCTGTGATATACGGCCTCGAATTTCAGGCTCGTGCACTTACTTCTCAGACAGCTGAATCGGATGCCATTCGCTTTCTTGTGGGCACTCAATCTCTCAAATTTGACAATCAGATCCACATCATTGACTTTGATGATGAGAATAACATCATTAGTAAGAGCGTCCTGCAGCACCAGGCAGGGGAGATATGGCACATCAGCGCCAGTCCTGCAGATAAAGCCGTGCTGACGACCTGCTACAACAAAAccaGTGAGAGTCGCGTGGTGACGTGTGGGGCTGTTTGGAGGATGCCCCCAGAGTGGGAGTCAGGGAGCCATGAATCCCCAGATGATCCCCACAACTCCCACAACCCCCAGAACCTGGAACTCCTCTGTCACCTTGACAACAGCTCCCACGGCAACGCCTCCTGTGTCCTGTGGGAGCCCATGGGAGATGGGAAGCATGTGATCTCTCTGGCTGATAACCACGCTCTGCTCTGGGACCTGACGGAGAGCTCTACCCAGGCCACGATCTCTAGCAGTGCCACCTTAGAGGGTAAAGGTCAACTGAAGTTCACGGCTGGGAAGTGGAGTCCACATCACAACTGTACCCAGCTGGCCACAGCCAACGACACAGCCATCAGAGGCTGGGACCTCCGTACCATGAGTCAGATCTACTGCATCGAGAATGCTCACGGGCAGCTGGTTCGAGACCTGGACTTCAATCCTAACAAACAGTACTACCTGGCCAGCTGTGGGGATGACTGCAAGGTCAAATTCTGGGACGTGAGAAACATCAACGAGCCAGTTAAGACCCTGGAAGAGCACTCCCACTGGGTGTGGAGCGTGCGCTTCAACCACTCTCATGACCAGCTGGTGCTGACCGGCAGCAGCGACAGCAGGGTGATTCTGTCCAACATGGTGTCCATCTCCTCCGAGCCCTTCGGTCACCTGGTGGACGACGATGACCTCAGCGACGGAGAGGACAACCACCAGGACGAGAAAACTAAGGAGCCCCTGCAGGACAGTATCATCTCTACCTATGAGGAGCATGAGGACAGTGTATACGCGGTGGAGTGGTCCTCGGCAGACCCATGGCTCTTTGCCTCACTCAGCTACGATGGCAGACTGGTCATCAACAGGGTCCCCCGCGCACTCAAATACCATATCCTGCTCTAGACAGACCTCACACTGGACTGAGAAAAGAGGGATAGAGGGcaaggtttggggggggggggggggggg
>TU1868562
AGTCTGGCCTTCACCTAGTGTACAGCACCACTACAGGCTTCTATCTCTGATAGATGTCATCAGGGAGGGTTGTTCTGGtgttttctcctttctctctctctcatttctctctctttctctatcattccccctctctctcttgtccccagTCAGATCTACTGCATCGAGAATGCTCACGGGCAGCTGGTTCGAGACCTGGACTTCAATCCTAACAAACAGTACTACCTGGCCAGCTGTGGGGATGACTGCAAGGTCAAATTCTGGGACGTGAGAAACATCAACGAGCCAGTTAAGACCCTGGAAGAGCACTCCCACTGGGTGTGGAGCGTGCGCTTCAACCACTCTCATGACCAGCTGGTGCTGACCGGCAGCAGCGACAGCAGGGTGATTCTGTCCAACATGGTGTCCATCTCCTCCGAGCCCTTCGGTCACCTGGTGGACGACGATGACCTCAGCGACGGAGAGGACAACCACCAGGACGAGAAAACTAAGGAGCCCCTGCAGGACAGTATCATCTCTACCTATGAGGAGCATGAGGACAGTGTATACGCGGTGGAGTGGTCCTCGGCAGACCCATGGCTCTTTGCCTCACTCAGCTACGATGGCAGACTGGTCATCAACAGGGTCCCCCGCGCACTCAAATACCATATCCTGCTCTAGACAGACCTCACACTGGACTGAGAAAAGAGGGATAGAGGGcaaggtttgg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574629.2 False 1385 mRNA 0.53 9 49565856 49611711
TU1868562 True 709 lncRNA 0.54 3 49607933 49611694

Neighbor

gene id symbol gene type direction distance location
LOC110498056 LOC106573945 coding upstream 347301 49200093 ~ 49218555 (+)
si:ch211-195o20.7 LOC106574021 coding upstream 373417 49171450 ~ 49192439 (+)
zgc:193593 NA coding upstream 398310 49160705 ~ 49178402 (+)
LOC110498053 erich1 coding upstream 410854 49129670 ~ 49155002 (+)
LOC110498051 NA coding upstream 773454 48787219 ~ 48792402 (+)
LOC110498066 LOC106573019 coding downstream 143257 49754968 ~ 49926745 (+)
LOC110498067 LOC106572928 coding downstream 315993 49927704 ~ 50024509 (+)
zgc:113142 LOC106570820 coding downstream 426054 50037765 ~ 50068382 (+)
LOC110498069 LOC106572557 coding downstream 476555 50088266 ~ 50144649 (+)
LOC110498072 NA coding downstream 551934 50163645 ~ 50168749 (+)
G1633177 NA non-coding upstream 5799 49559145 ~ 49560057 (+)
G1633173 NA non-coding upstream 7403 49558245 ~ 49558453 (+)
G1633172 NA non-coding upstream 7828 49557427 ~ 49558028 (+)
G1633171 NA non-coding upstream 8702 49556625 ~ 49557154 (+)
G1633170 NA non-coding upstream 9802 49555511 ~ 49556054 (+)
G1633227 NA non-coding downstream 56742 49668453 ~ 49673381 (+)
G1634098 NA non-coding downstream 140559 49752270 ~ 49753299 (+)
G1634144 NA non-coding downstream 248507 49860218 ~ 49861805 (+)
G1634175 NA non-coding downstream 318778 49930489 ~ 49930872 (+)
G1634177 NA non-coding downstream 322165 49933876 ~ 49934170 (+)
G1632650 arhgef10 other upstream 865288 48699057 ~ 48700568 (+)
LOC110498046 LOC106574720 other upstream 887701 48588944 ~ 48678169 (+)
LOC110498372 LOC106575065 other upstream 986200 48251112 ~ 48583066 (+)
LOC110498044 LOC106575475 other upstream 1436476 48122225 ~ 48129380 (+)
LOC110498078 LOC106572417 other downstream 631908 50243497 ~ 50265945 (+)
G1634948 NA other downstream 995675 50607386 ~ 50610479 (+)
hnrnpua hnrnpu other downstream 2963222 52561723 ~ 52576154 (+)
G1637065 NA other downstream 3138889 52750600 ~ 52755474 (+)
G1633190 NA non-coding upstream 7579 49598521 ~ 49600354 (+)
G1633192 NA non-coding upstream 9790 49596774 ~ 49598143 (+)
G1633191 NA non-coding upstream 10409 49594547 ~ 49597524 (+)
G1633189 NA non-coding upstream 17763 49589891 ~ 49590170 (+)
G1633180 NA non-coding upstream 38404 49568643 ~ 49569529 (+)

Expression


Co-expression Network