LOC110498067 (LOC106572928)


Basic Information

Item Value
gene id LOC110498067
gene name LOC106572928
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 49927704 ~ 50024509 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955011.1
GGAGCGGGTCAAAGGCAGCTGAGTTTAGCTTTACAATAACTCTGCCGATGTAGTAGTTAGTCTGCGAGAGGGGTAGCTGGCGGTGTGTTCTCTGCGCTGCTGACTCCCTAGCAATGGCGCTGAGGACAAGCCAACTCTTCTCCCCTTTTCTAATCGCGGTGGGACTGATTGTGGTCGCCGTTGGCCCGCAGCCTGTAATTTCTTGTCCAAGCCGGTGTTTATGTTTTCGTACCACCGTGAGATGTATGCATTTAAATCTGGAAACCGTACCTGCTGTCGCTCCATCGACAACCATCCTAGACCTGAGGTTCAACAAAATCAAGGACTTGCAGCCCGGCTCCTTCAGACGGCTAAAGAACCTCAACACACTCCTCCTCAACAACAACCACATCAGACGAATCCCCAGAGGAGCCTTTGAAGACCTGGAAAACCTCAAATATCTCTATTTGTACAAGAATGAAATCCAATCAATTGACAGACAAGCATTTAAGGGACTTGTCTCTCTAGAGCAACTGTACCTGCACTTCAACAACATTGAGTCCTTAGAACCGGAATCCTTCACCCAACTCCCAAAGCTTGAACGCCTGTTCTTGCACAACAACAGAATTACCCATCTCGTGCTGGGGaccttctcccatctccagtcCATGAAGAGACTGCGTCTGGACTCTAACACTCTGAACTGTGACTGTGAGCTGCTGTGGCTGGCGGACATGTTGAAGCAGTATGCTGAGTCAGGCAACGCCCAGGCTGCTGCCACCTGTGACTACCCCAGACGGCTGCAGGGACGATCTGTGGCCACACTCACCGCTGAGGAGCTCAACTgtgAGTTGCCCAGGATCACGTCAGAGCCCCAGGATGTTGACGTGACGTCAGGGAACACGGTGTACTTCACCTGCAGGGCTGAGGGAAACCCCAAACCACAGATCATCTGGCTTATGAACAATAATGCCCTGAACATGCATGATGACTCTCGTCTGAACCTGCTGGAGGACGGTACTCTGATGATCCAGGACACGCGGGAGACGGACCAGGGAGTGTACCAGTGCATGGCCAAGAACGTAGCTGGAGAAGTCAAGACCTCTCAGGTCACACTCAGATACTTCGGAGCCCCCTCGCGGCCCAGTTTTGTGATCCAGCCCCAGAATACAGAGGTGTTGGTGGGGGAGAGTATCACCCTGGAGTGTAGCGCTACAGGCCAGCCCCAGCCCCGGGTCTCCTGGACCAAGGGGGACCGCACTCCCCTGCCTACCGATGCCCGTATCAACACCACCCCGTCTGGGGGGCTGTTCATCCAGCATGTGGTGCAGGCAGACGAGGGGCAGTACACCTGCTTCGCCTCCAACAACCTGGACACCATCCACGCTACCGCTCACATCATTGTACAGGCGACCCCCCAGTTCACAGTGACCCCCCAGGACCAGTCAGTGTTGGAGGGTCACACGGTGGACTTCACCTGTGAGGCCAGCGGTTACCCCCAGCCCGTTATCGCCTGGACGAGGGGGGGCAGCCCCCTGCCCCAGGACCGCCGCCACCTGGTCCTCTCTACAGGCACGCTGAGGATCGCCCGCGTGGCGACCCACGACGAGGGCCAGTATGAGTGCCAGGCCGTCAGCCCGCTGGGCACGGTGCGCACCACCGTACAACTTAACATCCAGCAGAGAGTAACGCCTGTTTTCACAAATGCTCCAAGGGACGTGACTGTGGAGTCTGGCACGGACGTCCAGATTCCCTGCAGAGCTCAGGGACAGCCCGAGCCTGTCCTCACCTGGAACAAGGACGGTGTCCAGGTGACGGAAAGTGGGAAGTTCCACATCGCCCCTGAGGGCTTCCTGGAGGTTAAGGACGTGGGTCTAGCCGACGGTGGACGCTACGAGTGTGTCGCCCGCAACCCTATTGGCTACCAATCCGCTAGCATGGTGCTCACCGTCCTAGTGCCTCCAGTAAGTAGACAAGGGGACACCTTTGTGACGTCGTCTATTGAAGAGGCCATCCGCAACGTGGACAGTGCCATCGAATCCACCAGGAGGCATCTGTTTGATGGtaacCCTCGTACCCCTGGAGAGTTGCTGGCCCTATTTCGTTACCCCAGGGACCCCTACACAGTGGGGCAGGCCAGGGCGGGGGAGATCTTCGAACAAACCCTGCTCCTCATCCAGAACCATGTCAACCAGGGCCTCATGGTCGACACCAACGGCACAGCATTCCGCTACAATGACCTGGTGTCCCCTCACTTCCTGGATGTGATCGCCAACCTGTCAGGCTGCACGGCCCACCGCCGCTTCAACAACTGTTCTGACATCTGCTTCCACCAGAAGTACCGCAGCCACGACGGCACCTGCAACAACCTGCAGCACCCCATGTGGGGCGCCTCCCTCACCGCCTTCCAGCGCCTCCTCAAGTCAGTCTACGACAACGGCTTCAACCTGCCGCATGGCGCCAGCAGCCGCCATCACAACGGCCACGCCCTGCCTCTGCCCCGCCTCGTTTCCACCACCATGATCGGCACAGAGACCATCACCCCAGATGACCACTACACCCACATGCTCATGCAGTGGGGACAGTTCCTGGACCATGATCTAGATTCCACAGTTGCCGCCCTCAGCCAATCACGTTTCTCAGACGGCCAGCTGTGTACCAACGTGTGCACCAATGACCCTCCCTGCTTCCCCATCCAGTTCCCCCCGGGGGACCCTCGGCAGGCGCGCAGCGGGGCACGCTGCATGTTCTTTGTGCGTTCCAGTCCCGTGTGCGGCAGCGGCATGACATCACTCCTCATGAACAGCGTGTTTCCACGGGAACAGATCAACCAGCTGACATCGTACATCGACGCGTCCAACGTGTACGGCAGCTCACGCCATGAGTCAGAGGAGGTCCGCGACCTGGCCAGTCAGAGGGGACTGCTGAGGCAGGGCATCGTCCAGCGCTCTGGGAAGCCCCTGCTACCCTTCGCCACAGGGCCCCCTACAGAGTGTATGAGGGATGAGAACGAGAGCCCCATTCCCTGCTTCCTGGCTGGAGACCACAGGGCCAACGAGCAGCTGGGTCTGACAGCCATGCACACCGTGTGGTTCAGGGAACACAACCGCATAGCTACAGAGCTGCTCAGACTCAACCCACACTGGGACGGAGACACCATCTACCACGAGGCAAGGAAGATAGTTGGCGCACAGATGCAACACATCACCTACAACCACTGGCTGCCCAAGATCATGGGTGACGCGGGGAGGAAGCTGATTGGCGACTACCACGGCTACAACCCCAACATCAACGCCGGCATCCTCAACGCCTTCGCCACGGCTGCCTTCCGCTTCGGACACACCCTCATCAACCCCATCCTGTACCGGCTGGACGAGCACTTCCAGCCCATCCCCCAGGGCCACATCTCCCTGCACCGTGCCTTCTTCTCCCCCTTCCGCATCGTCAATGAGGGGGGCATCGACCCCCTGCTGCGGGGCCTGTTTGGCGTGGCGGGGAAGATGCGCGTGTCGACCCAGCTGTTGAACACGGAGCTGACAGAGAGGCTGTTCTCCATGGCCCACTCCGTGGCGCTGGACCTGGCCGCCATGAACATCCAGAGAGGAAGGGATCATGGGATACCGCCCTACAATGACTACCGGACCTTCTGTAACCTGACCTCGGCACAGAGCTTTGACGACCTGAGGAACGAGATCCAGAACCCCCAAGTCAGGGAGAAGCTGCAGAGGCTATACGGCACTCCCCTGAACATCGACCTGTTCCCTGCTCTGATGGCTGAGGACCTGGTTCCTGGGAGCCGGCTGGGACCCACCCTCATGTGTCTGCTGGCTGCCCAGTTCAAACGCCTTAGAGATGGGGACCGGTTCTGGTATGAGAACCCAGGTGTATTCAACCCGGCCCAGCTGACCCAGCTGAAGCAGGCATCTCTGACGAGGGTGCTGTGTGACAACGGTGACAACATCACTCGTATCCAGCAAGACGTGTTCAGCGTGGCACAGCTGCCCCACGGATATGGCAGCTGTGATGACATCCCCAACATTGACCTGCGCATGTGGCAGGACTGCTGCGAAGACTGCAGAACCAAGGGTCAGTTCAATGCCCTGTCCTACCACTTCAGAGGGCGCAGGTCAGTGGACCAGAGCTCTGCAGAGGAGAAGCCTGCCGCCAACAGCATACAGAGGAACAGCAGCCCAGGTGAAGGCACTCCTGAAAATCTTGTGAATGTCTCTCTCACCTGGCAACAAAGCATTGAACCCTCGCTGAATGACTTCCAAGACTTTGTGGTGGACATGCAGAAGACTATCACAGGTTTACGGAAGCAGaTTAAAAGACTTGAAGCTCGTCTGAGTAAGACAGACTGCACTGATACGGAGGGTCGTGAGCGATCGGACGGAGAAAGGTGGAAGAAGGATCCCTGCTCCACTTGCGAGTGCAGAgatgCCCAGGTGACGTGCTTCATGGAGTCGTGTCCTCCGATGGTGGAGTGCCAGGAGCCTGTGAAGCTGAAAGGATTGTGCTGCCCCATGTGTCTCAACCAAGGAGAGGGAGCAGCCAGTAACAGCCAGACCCAGACAGGGAGCCAGGCGCTGGGTAGCCCTCATCACGTATAACCCTCAGGGGCCCCGTGCCCTAGTGTctgacacacacctacacacacagaagGAGAGACCCTGACGGTGCGCTTACCTAACATCCACCTGCACCCAATTGCCtcgttttttaaattgtttttagaAAAATCAGAATTTgtattattttgttattttgattGTCATGTCCCCATGGCCAACAAACTGCCTGAGGCTTGGTTTCAAATCCACTGGCAACAGGAGAGCAGTCACTATCGATCTGCTTCCTTCTggaaggatgaatggatggatgaatatttggatggatggacagatggaaAACCCCCCTTCCTCACTCAGGGGCCTCCCATACAGGGCCTCAGATAGAGGTCTCTGATCTGAAGTGTTACCTCACCACTGCATTTGAAGGCCCCACAAAGTGGCTGAAACAAATTTGTTGTGAGAGGTGGAAATGGCACTGCAGCCATTAGATCGACCATGGGTCGGCCATGTTGTCTCAAAACGCTTTCTCAGGTTAGAGATGCCGAAAAACTGGTGCTAATTTTCCCCTTTGTCTTAACAATTTAGTCACTAAATACAACCATTctaagtattattattattattttctacaaTATGCAAAGCAACAAATATACACTCATTATGTGCCTTTTGTTCTTTAAAAAAATCACGAGACATTTTATGTACTAAATTACTTCTGCTTTTCAAAATGTTTATGGTGCTTTATATCATATTATGAATATGTATTTTTCCTTTTGTATCACCTGCTAACATATGAAGATAATGTGAAGCCCTACAAAAAAAACTTTTACAATTCAAAGATGTctactgatttttaccttgttatcACATCTGTCTTCAATGGCAACTGTTGGTGAACTAAATAACATCTGGTATTTAGATatgttatctcctctcctcaaGGCAATGTCAAACTTTTACAAACTTGAGGGGTGTTGGTTGGAGTTGGGGCTTGGGGTTGGGTTGGAAGGGGAGATGTTCCTATTTGGCTCAACCGCTCTTTACTAGAAGGCATAATACATTTTTTCTCTCAAGGTGTAATGCTTTTTCACACTCCATGTTGTTAAAGCAGTGAAAGGCCATTTGTTACCACTGTAGAGATGTAGTCATTTTTGTCCCAACGTTTTCAGTGTTCGCCCCCTCTTTCAGTGCCTACTGTTAACCTACCACAGCAGTACTCTGTCCTACCCCTAGTGTCCCGTCTACCCCTCTCTCCAGCATTAGCCCATACTCACACATAGACATTAAAGGACTGCAGCCATACCTCCCTAACTATCTTGTGCTCTCATAACCAAACCCACAGCTTCTCAGCTCCAGTTTACTGAAGGACAATCACTCACATGCATTCCTTTCCTCCTTCCCAAGCACTCAGCCCATATGATGTAACTATTCTCCTCTGTGTGCtggagagttgtgtgtgtgtgaccgatcACCAGGTCTCTGTAGTTTTAATGCAGGTGAGAAACCTTGCCTGGCTCTCATCTCTTAGGTTCCTAGGAGACGATGGATATGGAGGTGAGGTGACATCATTTGGCCGGGTGTGTGAAGCGCAGACGTCTACCTCTCTGAACCCCATTCCTCTCTAATGCAAGccagatgggaggggagggtggaatGGGACATGGTGTCAATCAAATATCTGGTGCTGCTTTATTTTCTGGAGGCTCCCTACTGTTACAAATCAGCCAACAGAGTGTTTCCCAttgacggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggcccattAATCAGATACaagtatgtacagtatgctgtTGGGGTTTGGGGTTTCTCCAAGAATGTCAAGGCAATCATGTAGTTGTGGTGGAGCTCAATAGCAATGTTGGCACATTGGTATCATACCACATGGAATACATGCTGCATTATGTATTGTAGACccttcctttctcctccctctacttTCCTCTGTAGTACCTTGGCTTTTACTcctgcttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcgtgtgtctgcgtctgtATATGCATGCAACCCCAGGTTTGGCTCCCATTGCACTGTGACCTCACTTCCTCTGCATCGCTGGTTGTCATGTCATCTTCAGCCATGTTGTAATGAGTACCTTTCGTCGTTTTTTAAATTTTCATTCTAACCTTCATGTTACTGGTCTCCCCTTTGTTCCCCAAACCCCCCACTGTCACCAGAATGCACTGCTCTGCAAGACTGAACATGCTTTACCTACACTGTCCCAAAGTGAGTGGTCAAAGTGGATACCTATCTGACAATTGTATTGTAAGGTTGCCAAAGAATTGTTTGCACTGTAATGTAAGCCTCTCAACAATAATAAAAAATAGGCCACATTTGAAGTACAA

Function

NR:

description
peroxidasin-like

GO: NA

KEGG:

id description
K19511 PXDN, VPO1; peroxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955011.1 True 7089 mRNA 0.53 23 49927704 50024509

Neighbor

gene id symbol gene type direction distance location
LOC110498066 LOC106573019 coding upstream 959 49754968 ~ 49926745 (+)
LOC110498063 LOC106573328 coding upstream 315993 49565856 ~ 49611711 (+)
LOC110498056 LOC106573945 coding upstream 709149 49200093 ~ 49218555 (+)
si:ch211-195o20.7 LOC106574021 coding upstream 735265 49171450 ~ 49192439 (+)
zgc:193593 NA coding upstream 760158 49160705 ~ 49178402 (+)
zgc:113142 LOC106570820 coding downstream 13256 50037765 ~ 50068382 (+)
LOC110498069 LOC106572557 coding downstream 63757 50088266 ~ 50144649 (+)
LOC110498072 NA coding downstream 139136 50163645 ~ 50168749 (+)
iars2 iars2 coding downstream 178560 50203069 ~ 50219807 (+)
LOC110498078 LOC106572417 coding downstream 218988 50243497 ~ 50265945 (+)
G1634144 NA non-coding upstream 65899 49860218 ~ 49861805 (+)
G1634098 NA non-coding upstream 174405 49752270 ~ 49753299 (+)
G1633227 NA non-coding upstream 254323 49668453 ~ 49673381 (+)
G1633190 NA non-coding upstream 327350 49598521 ~ 49600354 (+)
G1634280 NA non-coding downstream 68058 50092567 ~ 50092905 (+)
G1634292 NA non-coding downstream 83499 50108008 ~ 50108236 (+)
G1634293 NA non-coding downstream 83963 50108472 ~ 50108736 (+)
G1634294 NA non-coding downstream 84618 50109127 ~ 50109346 (+)
G1634275 NA non-coding downstream 122686 50147195 ~ 50148050 (+)
G1632650 arhgef10 other upstream 1227136 48699057 ~ 48700568 (+)
LOC110498046 LOC106574720 other upstream 1249549 48588944 ~ 48678169 (+)
LOC110498372 LOC106575065 other upstream 1348048 48251112 ~ 48583066 (+)
LOC110498044 LOC106575475 other upstream 1798324 48122225 ~ 48129380 (+)
G1634948 NA other downstream 582877 50607386 ~ 50610479 (+)
hnrnpua hnrnpu other downstream 2550424 52561723 ~ 52576154 (+)
G1637065 NA other downstream 2726091 52750600 ~ 52755474 (+)

Expression


Co-expression Network