LOC110498078 (LOC106572417)


Basic Information

Item Value
gene id LOC110498078
gene name LOC106572417
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50243497 ~ 50265945 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955018.1
CTATTGGTGCTGCCTTTTCACACGGGGTTTAAACCTGGGATGCATCTTGAGAGGACTGCACCGGCGTTTGCATAATATGAACCGTGTACTGTTCTTGAATGCACCACAAGCCTGCGAACATTTCACTGCGCAAACCATAGAACAAACGGCATTTGTTATGACTCTGACATTATCAAACTCGTTCTAATTTGCTGTTCATGCCATTTGATTTTCCCACGTTGGATGTAACAAAACGTCATACATAATGATGATAAACCGCTTGTCCTAGTTTATCGCTTTTGATACAATGTAACTCTTCGTCCTGAGTGTTCGAAACAGCGGCTCGCTGGAGTGGACAGCTTCTTACTTCCTGATCTTGCTCTGCGGAATCCTTACAGCCTTCAAGATGCTTGAGACTCCTCCTGGCTATCCCTTCGAAGAGATAGAATATGAGGACATAGAAGTTGAAGAGGTTGTTGGCAGAGGGACATTTGGAGTTGTCTTCAAGGCTAAATGGAAAGGCAAAGATGTGGCCATCAAGACCATAGAGAGTGAATCTGAGAGGAAAGCTTTTGTAGTAGAGCTCCGCCAGCTTTCCAGAGTAAATCACCCAAATATTGTCAAGCTCTATGGCTCATGTGATAATCCAgtgtgtcttgttatgGAATATGCTGAGGGTGGCTCCTTATACAATGTGCTGCATGGAGCTGAGCCCCTGCCCCAGTACAGTGCATCCCACGCTATGAgctggtgtctgcagtgtgctcaGGGTGTATCCTATCTCCACGCCATGAAACCCAAGGCCCTCATTCACAGAGACCTCAAACCACCCAATCTGCTACTTGTACAGGGTGGCACAGTGTTGAAGATCTGCGACTTTGGGACAGCCTGTGACATCCAGACACACATGACCAACAACAAAGGAAGTGCAGCCTGGATGGCACCAGAAGTGTTTGAAGGCAATAACTACAGTGAGAAGTGTGATGTGTTCAGCTGGGGCATCATCTTGTGGGAGGGGATCACTCGTAGAAAGCCCTTTGACGAGATCGGAGGATCGGCCTTCTGCATCATGTGGGCCGTGCACAGAGGTGAGAGGCCCCCCCTGATAAAGGACCTCCCGGAGCCCATCGAGAATCTGATGACACACTGCTGGGACAAAGACCCTTCCCAGAGGCCCTCCATGGAGGAGGTCAGGAACACCATGGCAAGCCTCATGAAGTACTTCCCAGGATCTGATGAGCCTCTCCAGTACCCTCACCAGTGTCCAGGCAACAGTAGGAGTGGCTCATCCTCAGCCACAAGCACAGGTTCCTATGCAGACAACACTATCAACAGCTATCGAACTGAAAGCAACATGGAACACAGAACAAACTGTCAAGGGAGAGATGACACCCTGAAAAGCATTGAAGCTAGATTTCCACTTCAGTTTAAACAATCAAAGGGGGGAACATTACGCCCCAGCCTGCCCTCGTCCAGAAGGGCTAGTGTGGAGAGCCTGCCTGATCGTGAGCGTACCCAGAGTCCTGCCCCCACTGAGATCAAAGGGCAATGTGCTGGCCAATCGGGGCCAGAGCTGAGGGTTTCTATCAGTCCCACAGATATGAATGGTTTGGACAGCTCCATCCCCATGGCATATCTGACACTGGATCACCAGCTGCAGCCCCTGGCCCCATTCTCTAACTCCAAAGAGTCCATGGCTGTGTTTGAGCAGCACTGCAGAATGGCCCAGGAGTACCTTAAAGTGCAGACTGAAATCACCCTTCTCACCCAAAGAAAGAAGGAGCTGATCTCTGAGCTGCACCAGGATGAGAGGCAGCAGCAGAACACGTCCCGTCTGATTCAGGAACACAACAAACTGTTGGACGAGAACAAGAGTCTCTCCACCTACTTCCACGTTTGTAAGAACAAGCTGGAGCGGATCCAGAGTCAGCAACAGACGAATTAGAATGCCTCCTGATGTGTGCCTGTTGCACTAGAAATGTCCTCAGATCAGCAGCAGCCGAAGACACTGTCTGTCAAGTGGCCATTTTGTGATGTCTCTTCTGTTGACCCTCAGCTGTTTTGGGATCAGCTGCAGCCAAATATACCTACCATATTTGTAATGAATCCTTCATATTGCTCATCAACTGTTTTTGGATGAGCAGCTAAAGAGACTGGCCATTTGTTAACACTTCCCTGTTGCTCTTAAACTGTTCTTGGATCATTGGCCAAAGAGGAAAGCCATACTATTATGAATGTTTTGTAGATCCTCAACTGATCCACAGTCAGCAGCAGACTGCACACAGCAGGTCTCCCCTCAGGTCCTTGCTCCCCAATGCGCTGTACAGTTAAGATACTCTGCCGCATTAGGTACAACAATAATATTGTGCAAGATGTCTCATTAACAGCTCAGTTCATTTGCACGCATGTCTCGCAAAGACGTTATTCTACTCTACCAGAGGAACAGTGGACTCGTTGAACATGGGAAGCCTGGAGGCCCTGTAACATCTTCTCCTACTGTAGCAGTCGACATCCAAAATAAAATGCAGTTGCCTCTAGAGATTGATCTTTGGTCAGTTTTGTATTCCCCTCCCCAATGTTTAAAGTTAGGATTTGAGGAGgacaagctgatcctagatctgtgcctaagttTAATGTATGCTCTTAGTGTGGCTGTTGGTGTTGTTAAGGTGTATGACTTGCAGTAACACCTCAGACGACTTGAGGTGTTTCCTGTCTTGCGGCAGATGTCTGTCCCCTCCCCAGGGCTGTTGTAGAGGTGCTAGTATTGAAAGAAGTGGCTCAACTTGTTGTTCTTCTCTGGCTCTGACCTCTCTGTGACAGCTAGCTTTGTATGGAGATGACTAAGATATGCACAAAAGGCTGTCGTTTCATATATATTTACGTCTTTTAAAATTTCTATGGCATTCTTATATCTTTTCCCCTTTTCATATGCACTGGCTCATTGAGAAGTAATGACACtattttaaatggatttttatgaTTTTTATATAGCCTATACTTTTCCATGTTCGGAGAATCAGCAAAGTTTTACATTTGTTTTGAGATCTTTCTCAATCTTTCTGCCTTGGAGGTTTTAGATATTTCTTTTCTCATTCTCTAAATGTAGAATGCCACCACCACTAAGTATTAGTTATTATATTTTGTTAATTTAGTCAATTATTTGACTTTTGTATCCACTCCTACAGTGTTAAATGTGTATGTGCTGGTTGTGGACTAAGTGTTTGGTCTTGTTCTATCACTTCCAGAAATGTGTTATATACTTCTGTTCGCTTTATTTGCCCTCTGTGTGCGCCTGCGTGTTCACAAGTTGCCTTAGGCTATATCTCACTTTCTGTGCTGTATTTTTAAAAATAGCATTTTGACTTGCAAAACCAGATGTCGTCAATGCACTTTTGAATGTACAGTGAGCTCAAAACGTATTGggacacatttgttgttgttttgtctctgtactccagcactttggatttgaaatgatacaatgactatgagtttgaggtgcagactgtcagctttaatttgagggtatttatttattttcatatcaggtgaaccgtttagaaattacatcCATTTTTACCCCCCACccacccattttaggggaccaaaagtattggaacaAATTCACTTGTATGTGTAAAGTAGTCAaatgtttagtatttggtcccatattcctagcacacaatgattacatcaagcttgtgactctacaaacttgttgaaaATAAttagctgtttgttttggttgtgtttcagattgttttgtgcccaatagaaattaatggtaaataatgtattgtgtcattttggagtcacttgttggatgtatttgatctttgttttggttgtttcaggttattttgtgcccaatagaactGTAAAtggggggggactatgtacaaaaagtgctgtaatttctaaacggttcaccgtATGTGGATGAACTTACCCTCAAATGAAagatgtcactgtcccaatacatttggagctcactgtatatctAAGGATTTCAAAAGTACTCAAATAAAAGGTAATGCACACAAGAAAAGGCTATTTTTACATTATTTGTATAAAGGACATCGCTAATATAATGTTGCCCTAGCATATCTTTTTGATTTAATTTGCACTTTGTGTGTCACTCAGTGTATCGGAAATGCCTGTATACTTAAGTGCATAAAACAGTTCCTAATATCTACGA
>TU1869885
TCACTGCGCAAACCATAGAACAAACGGCATTTGTTATGACTCTGACATTATCAAACTCGTTCTAATTTGCTGTTCATGCCATTTGATTTTCCCACGTTGGATGTAACAAAACGTCATACATAATGATGATAAACCGCTTGTCCTAGTTTATCGCTTTTGATACAATGTAACTCTTCGTCCTGAGTGTTCGAAACAGCGGCTCGCTGGAGTGGACAGCTTCTTACTTCCTGATCTTGCTCTGCGGAATCCTTACAGCCTTCAAGATGCTTGAGACTCCTCCTGGCTATCCCTTCGAAGAGATAGAATATGAGGACATAGAAGTTGAAGAGGTTGTTGGCAGAGGGACATTTGGAGTTGTCTTCAAGGCTAAATGGAAAGGCAAAGATGTGGCCATCAAGACCATAGAGAGTGAATCTGAGAGGAAAGCTTTTGTAGTAGAGCTCCGCCAGCTTTCCAGAGTAAATCACCCAAATATTGTCAAGCTCTATGGCTCATGTGATAATCCAgtgtgtcttgttatgGAATATGCTGAGGGTGGCTCCTTATACAATGTGCTGCATGGAGCTGAGCCCCTGCCCCAGTACAGTGCATCCCACGCTATGAgctggtgtctgcagtgtgctcaGGGTGTATCCTATCTCCACGCCATGAAACCCAAGGCCCTCATTCACAGAGACCTCAAACCACCCAAgacaatgacccaacacacctccacgctgtataagggctatttgac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955018.1 False 4180 mRNA 0.44 15 50243497 50265945
TU1869885 True 736 TUCP 0.46 7 50243619 50255252

Neighbor

gene id symbol gene type direction distance location
iars2 iars2 coding upstream 23690 50203069 ~ 50219807 (+)
LOC110498072 NA coding upstream 74748 50163645 ~ 50168749 (+)
LOC110498069 LOC106572557 coding upstream 98848 50088266 ~ 50144649 (+)
zgc:113142 LOC106570820 coding upstream 175115 50037765 ~ 50068382 (+)
LOC110498067 LOC106572928 coding upstream 218988 49927704 ~ 50024509 (+)
LOC110498377 LOC106571989 coding downstream 6099 50272044 ~ 50335206 (+)
LOC110498080 LOC106571921 coding downstream 91680 50357625 ~ 50378113 (+)
LOC110498081 NA coding downstream 170753 50436698 ~ 50437783 (+)
LOC118941376 NA coding downstream 248977 50514922 ~ 50516672 (+)
heatr4 heatr4 coding downstream 254450 50520395 ~ 50526363 (+)
G1634359 LOC106572210 non-coding upstream 2298 50238490 ~ 50241199 (+)
G1634334 NA non-coding upstream 51308 50190679 ~ 50192189 (+)
G1634333 NA non-coding upstream 53445 50189825 ~ 50190052 (+)
G1634329 NA non-coding upstream 58349 50184915 ~ 50185148 (+)
G1634324 NA non-coding upstream 64012 50179263 ~ 50179485 (+)
G1634681 NA non-coding downstream 1693 50267638 ~ 50268044 (+)
G1634693 NA non-coding downstream 7658 50273603 ~ 50274264 (+)
G1634705 NA non-coding downstream 23192 50289137 ~ 50289357 (+)
G1634712 NA non-coding downstream 30890 50296835 ~ 50297054 (+)
G1634713 NA non-coding downstream 32995 50298940 ~ 50299387 (+)
zgc:193593 NA other upstream 1065095 49160705 ~ 49178402 (+)
G1632650 arhgef10 other upstream 1542929 48699057 ~ 48700568 (+)
LOC110498046 LOC106574720 other upstream 1565342 48588944 ~ 48678169 (+)
LOC110498372 LOC106575065 other upstream 1663841 48251112 ~ 48583066 (+)
G1634948 NA other downstream 341441 50607386 ~ 50610479 (+)
hnrnpua hnrnpu other downstream 2308988 52561723 ~ 52576154 (+)
G1637065 NA other downstream 2484655 52750600 ~ 52755474 (+)
G1637178 NA other downstream 2651392 52917337 ~ 52918478 (+)
G1637730 NA other downstream 3164059 53430004 ~ 53430560 (+)

Expression


Co-expression Network