LOC110498080 (LOC106571921)


Basic Information

Item Value
gene id LOC110498080
gene name LOC106571921
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50357625 ~ 50378113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574653.2
TGCAGAGAGTGCAAGACTGAATGAGGAAGTAACGTGAAAACTCAAAATACAAGGTTTGCTATGCGGGATCCTTAGGACGTCCCTACCCCATTGGAGTTGATATTTAAACGGGTTACGGTAAGGGTTAGGTTGTGAGTTAAGGTTTAGTGTTTTGGGCGTCCCAAGGATACCGGATTGCACTGACCATATATTTCTGCCAGGAAGAGAGACGAAATCAATACGGAAGATAAAAGCGTGTGTCTTTGGTTAACACTGTCGACGAGATGTGAGCTAAGGCAAGGGGTTCCCCAAAACACCAGTCAGCAAATTGGACCGCCGATGACGACCGCCTGAAACGTCTCGTTTTTATCGGACAGTGGCCGAAACAGATGAAAACCTATTGCAATATTGCACAATATTTAATACACTGAGACTTGGACTCAAAaatagtaggcctactgtattgAGATGGCCACGTTTGATTGACAGCGGTTAAATTCAATCGTAGCGCCGTACAATTTTGATAACACCGCGTCCGTTGTGAACACGCTCACGTTCATCAGTCGAATgccgaaggagagagagaagaggagaaaggcctccaaggaggcagggctgtctggCGCTGGTATTAGTGATGGGTTCGTTAAAGAGCGCAGAACAAGCCGCAGAGCATCTGAGCTTCGCGATGAACTCTGCCAGGCGAAAGAAGTAAAGTTATCTGAGTTTAACACCACTCAAGTGCAAACTAGTATGATGGAGGCGCTCCGTGTACCGCAGGTGACAATAACCCCAGATGGAGGCTGCTCGCGTGAGATCCAGCAGGAGGACTGGGCTGATGTGGAAGGCTCGCTGCGACGGAAATTGTCAAACTCCTCGATCTCCTCAACAGGTTCCTCCATCATGTTGGAAGAGTCAGAGGATGACATTCTGAGTGACAACGAGACAAAGAGCAAGGGCAATATCACTTTAGAACATTTGTGTGAGGACACGAGTGAACAGAGCAAACCTTGGTGGAAGATAAAGACTATTGTCAACTGGCCTTTTGTTTCCCCACAAAGAAGAAACCTGTCCTGGGTTCAACTAGCTGGACACAAAGGTAATTTCAAAGCTGGCGGCGAAGGCACCATTCTGAAGAAGTTCTCTGAGAATGAGAAGCTGTGTTTTGAGAGGCTGCAGGGAGACGTTCTCCAGGACTTTGTACCAGGATATTATGGTGTGGTGGAGAGGGATGGGGATCCCTTCCTACATATGACTGATCTATTAGTCAACTTTGATAGACCCAGTGTCATGGACTGCAAGATGGGAGTGAGGACGTatctggaggaggaggtggtgcgAGCCCGAGAGCGGCCTAAGCTCCGTAGGGACCTGTTTGACAAGATGCTGGAGGTGGACAGTGAGGCCCCCAGCCCCCAGGAGCACCTCCAGAGGGCCGTCACCAAACCCCGCTACATGCAGTGGAGAGAGACCCtcagctccacacacacactgggcttcCGAATCGAAGGCATCAAAAAAGCTGACGGGACGTGTCACACGGATTTCAAGAAGACCCGGTCTAAGGAGGATATCACTCAGATCTTCAGGGACTTTgccacaaacaacacaaacatacTAAATTCCTACCTGAGTAAACTAGCAAAAATTCAACAAGCCCTGATGTCATCTGAGTTCTTCAAGAGACACGAGGTGATTGGGAGCTCCCTCCTCTTCATTCATGACCACACTGACCGAGCTGAGGTTTGGCTCATTGACTTCGGCAAGACTACAGCTTTACCAGAGGGACAGACTCTGGACCACTCCATACCCTGGCAGGAGGGCAACCGAGAGGACGGATACATGTGGGGACTGGACAACCTGATGAGGACACTGGGCTCTTTGACTAACAAAGGAACTAGTGAAGGAAGTAATGAATGCCTTTAAGCTATGACCACCTGGGAGGGATTGGACTACCCCATTCCAGTAGTTAGAGGACCCTGGCAGTAATATACAGTCTCAAGGGGCCCCTCAATCACAAAGTATACATACTGTGTAAATCAAACTTACAGCTTATTCAGCACAACAAATTGTATCTCAGCGTATTGTTGAAGCTATTGTAGCATGGAGATAAGGGATTGCGTTTTTTAAAGTATGTCTGTgccttgtgaacaaactatacatTTTAGGGGAATTTTAATGAATGCAAATTAATGAACAGACACAAACCTGTGATTGTAGTGCCTGTATATTCTAGAAAGCCATACAATACTATCGATGTAAGGGACAGTGTTGCATAGAAATCCAACCCATTCCATATTCCAAGGTGTCATTAGATTTGATtgatttcagtttttgatattcAAGCATggtctattttatttttttttgttttcaaaCTTTATTGAAGACATTAGGCATACTGTATTCTAATACAGCTACATACACCAGTGCGTCTTTAGGATCATCTCATTATCATGACGAAGGATGAATGAAAAATGAATCACGCAAGTATTGTATTATGACAGTCCATGAGACTAACCTCAGAAAAACACTATTGCCTTGTCCCAATGAGTTAGAAATGGTTGTGTATTGGGAGTTTTTTCATATGTACAAGTAAAATGTCTTGCTGTATGTCTTGCTGTATTATAAAACACTTATCAAAA
>XM_021574654.2
ATgccgaaggagagagagaagaggagaaaggcctccaaggaggcagggctgtctggCGCTGGTATTAGTGATGGGTTCGTTAAAGAGCGCAGAACAAGCCGCAGAGCATCTGAGCTTCGCGATGAACTCTGCCAGGCGAAAGAAGTAAAGTTATCTGAGTTTAACACCACTCAAGTGCAAACTAGTATGATGGAGGCGCTCCGTGTACCGCAGGTGACAATAACCCCAGATGGAGGCTGCTCGCGTGAGATCCAGCAGGAGGACTGGGCTGATGTGGAAGGCTCGCTGCGACGGAAATTGTCAAACTCCTCGATCTCCTCAACAGGTTCCTCCATCATGTTGGAAGAGTCAGAGGATGACATTCTGAGTGACAACGAGACAAAGAGCAAGGGCAATATCACTTTAGAACATTTGTGTGAGGACACGAGTGAAAGCAAACCTTGGTGGAAGATAAAGACTATTGTCAACTGGCCTTTTGTTTCCCCACAAAGAAGAAACCTGTCCTGGGTTCAACTAGCTGGACACAAAGGTAATTTCAAAGCTGGCGGCGAAGGCACCATTCTGAAGAAGTTCTCTGAGAATGAGAAGCTGTGTTTTGAGAGGCTGCAGGGAGACGTTCTCCAGGACTTTGTACCAGGATATTATGGTGTGGTGGAGAGGGATGGGGATCCCTTCCTACATATGACTGATCTATTAGTCAACTTTGATAGACCCAGTGTCATGGACTGCAAGATGGGAGTGAGGACGTatctggaggaggaggtggtgcgAGCCCGAGAGCGGCCTAAGCTCCGTAGGGACCTGTTTGACAAGATGCTGGAGGTGGACAGTGAGGCCCCCAGCCCCCAGGAGCACCTCCAGAGGGCCGTCACCAAACCCCGCTACATGCAGTGGAGAGAGACCCtcagctccacacacacactgggcttcCGAATCGAAGGCATCAAAAAAGCTGACGGGACGTGTCACACGGATTTCAAGAAGACCCGGTCTAAGGAGGATATCACTCAGATCTTCAGGGACTTTgccacaaacaacacaaacatacTAAATTCCTACCTGAGTAAACTAGCAAAAATTCAACAAGCCCTGATGTCATCTGAGTTCTTCAAGAGACACGAGGTGATTGGGAGCTCCCTCCTCTTCATTCATGACCACACTGACCGAGCTGAGGTTTGGCTCATTGACTTCGGCAAGACTACAGCTTTACCAGAGGGACAGACTCTGGACCACTCCATACCCTGGCAGGAGGGCAACCGAGAGGACGGATACATGTGGGGACTGGACAACCTGATGAGGACACTGGGCTCTTTGACTAACAAAGGAACTAGTGAAGGAAGTAATGAATGCCTTTAAGCTATGACCACCTGGGAGGGATTGGACTACCCCATTCCAGTAGTTAGAGGACCCTGGCAGTAATATACAGTCTCAAGGGGCCCCTCAATCACAAAGTATACATACTGTGTAAATCAAACTTACAGCTTATTCAGCACAACAAATTGTATCTCAGCGTATTGTTGAAGCTATTGTAGCATGGAGATAAGGGATTGCGTTTTTTAAAGTATGTCTGTgccttgtgaacaaactatacatTTTAGGGGAATTTTAATGAATGCAAATTAATGAACAGACACAAACCTGTGATTGTAGTGCCTGTATATTCTAGAAAGCCATACAATACTATCGATGTAAGGGACAGTGTTGCATAGAAATCCAACCCATTCCATATTCCAAGGTGTCATTAGATTTGATtgatttcagtttttgatattcAAGCATggtctattttatttttttttgttttcaaaCTTTATTGAAGACATTAGGCATACTGTATTCTAATACAGCTACATACACCAGTGCGTCTTTAGGATCATCTCATTATCATGACGAAGGATGAATGAAAAATGAATCACGCAAGTATTGTATTATGACAGTCCATGAGACTAACCTCAGAAAAACACTATTGCCTTGTCCCAATGAGTTAGAAATGGTTGTGTATTGGGAGTTTTTTCATATGTACAAGTAAAATGTCTTGCTGTATGTCTTGCTGTATTATAAAACACTTATCAAAA

Function

NR:

description
inositol-trisphosphate 3-kinase A-like isoform X2

GO: NA

KEGG:

id description
K00911 ITPK; 1D-myo-inositol-triphosphate 3-kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574653.2 False 2624 mRNA 0.45 7 50357625 50378113
XM_021574654.2 True 2075 mRNA 0.46 7 50358171 50378113

Neighbor

gene id symbol gene type direction distance location
LOC110498377 LOC106571989 coding upstream 22419 50272044 ~ 50335206 (+)
LOC110498078 LOC106572417 coding upstream 91680 50243497 ~ 50265945 (+)
iars2 iars2 coding upstream 137818 50203069 ~ 50219807 (+)
LOC110498072 NA coding upstream 188876 50163645 ~ 50168749 (+)
LOC110498069 LOC106572557 coding upstream 212976 50088266 ~ 50144649 (+)
LOC110498081 NA coding downstream 58585 50436698 ~ 50437783 (+)
LOC118941376 NA coding downstream 136809 50514922 ~ 50516672 (+)
heatr4 heatr4 coding downstream 142282 50520395 ~ 50526363 (+)
LOC118936464 adf1 coding downstream 148828 50526941 ~ 50529343 (+)
LOC110498087 LOC106571300 coding downstream 281859 50659972 ~ 50680974 (+)
G1634794 NA non-coding upstream 5334 50352090 ~ 50352291 (+)
G1634739 NA non-coding upstream 14979 50342303 ~ 50342646 (+)
G1634734 NA non-coding upstream 27263 50330082 ~ 50330362 (+)
G1634730 NA non-coding upstream 34192 50323211 ~ 50323433 (+)
G1634802 LOC106571863 non-coding downstream 111 50378224 ~ 50380198 (+)
G1634821 NA non-coding downstream 17956 50396069 ~ 50396273 (+)
G1634827 NA non-coding downstream 29208 50407321 ~ 50407527 (+)
G1634828 NA non-coding downstream 30660 50408773 ~ 50409048 (+)
G1634939 LOC106571589 non-coding downstream 199557 50577670 ~ 50582425 (+)
zgc:193593 NA other upstream 1179223 49160705 ~ 49178402 (+)
G1632650 arhgef10 other upstream 1657057 48699057 ~ 48700568 (+)
LOC110498046 LOC106574720 other upstream 1679470 48588944 ~ 48678169 (+)
G1634948 NA other downstream 229273 50607386 ~ 50610479 (+)
hnrnpua hnrnpu other downstream 2196820 52561723 ~ 52576154 (+)
G1637065 NA other downstream 2372487 52750600 ~ 52755474 (+)
G1637178 NA other downstream 2539224 52917337 ~ 52918478 (+)
G1637730 NA other downstream 3051891 53430004 ~ 53430560 (+)

Expression


Co-expression Network