Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118936464 |
| gene name | adf1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 50526941 ~ 50529343 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| adf1 | Enables DNA-binding transcription activator activity, RNA polymerase II-specific. Involved in several processes, including memory; regulation of dendrite development; and synapse assembly. Located in nucleus and polytene chromosome interband. Is expressed in several structures, including central nervous system; embryonic/larval muscle system; extended germ band embryo; germ layer; and gut section. |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0003677 | DNA binding | molecular_function |
| id | description |
|---|---|
| K09427 | ADF1; Adh transcription factor 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036955026.1 | True | 1450 | mRNA | 0.41 | 2 | 50526941 | 50529343 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| heatr4 | heatr4 | coding | upstream | 578 | 50520395 ~ 50526363 (+) |
| LOC118941376 | NA | coding | upstream | 10269 | 50514922 ~ 50516672 (+) |
| LOC110498081 | NA | coding | upstream | 89158 | 50436698 ~ 50437783 (+) |
| LOC110498080 | LOC106571921 | coding | upstream | 148828 | 50357625 ~ 50378113 (+) |
| LOC110498377 | LOC106571989 | coding | upstream | 191735 | 50272044 ~ 50335206 (+) |
| LOC110498087 | LOC106571300 | coding | downstream | 130629 | 50659972 ~ 50680974 (+) |
| LOC110498383 | LOC106570236 | coding | downstream | 1413049 | 51942392 ~ 51992547 (+) |
| LOC110498384 | LOC106570052 | coding | downstream | 1474782 | 52004125 ~ 52035886 (+) |
| tfb2m | tfb2m | coding | downstream | 1578299 | 52107642 ~ 52118171 (+) |
| LOC110498094 | LOC106569575 | coding | downstream | 1589125 | 52118468 ~ 52150151 (+) |
| G1634828 | NA | non-coding | upstream | 117893 | 50408773 ~ 50409048 (+) |
| G1634827 | NA | non-coding | upstream | 119414 | 50407321 ~ 50407527 (+) |
| G1634821 | NA | non-coding | upstream | 130668 | 50396069 ~ 50396273 (+) |
| G1634802 | LOC106571863 | non-coding | upstream | 146743 | 50378224 ~ 50380198 (+) |
| G1634794 | NA | non-coding | upstream | 174650 | 50352090 ~ 50352291 (+) |
| G1634939 | LOC106571589 | non-coding | downstream | 48327 | 50577670 ~ 50582425 (+) |
| G1634979 | NA | non-coding | downstream | 152305 | 50681648 ~ 50683147 (+) |
| G1634983 | NA | non-coding | downstream | 154184 | 50683527 ~ 50684117 (+) |
| G1634990 | ush2a | non-coding | downstream | 166882 | 50696225 ~ 50696968 (+) |
| LOC110498078 | LOC106572417 | other | upstream | 271689 | 50243497 ~ 50265945 (+) |
| LOC110498072 | NA | other | upstream | 359555 | 50163645 ~ 50168749 (+) |
| zgc:193593 | NA | other | upstream | 1348539 | 49160705 ~ 49178402 (+) |
| G1632650 | arhgef10 | other | upstream | 1826373 | 48699057 ~ 48700568 (+) |
| LOC110498046 | LOC106574720 | other | upstream | 1848786 | 48588944 ~ 48678169 (+) |
| G1634948 | NA | other | downstream | 78043 | 50607386 ~ 50610479 (+) |
| hnrnpua | hnrnpu | other | downstream | 2045590 | 52561723 ~ 52576154 (+) |
| G1637065 | NA | other | downstream | 2221257 | 52750600 ~ 52755474 (+) |
| G1637178 | NA | other | downstream | 2387994 | 52917337 ~ 52918478 (+) |
| G1637730 | NA | other | downstream | 2900661 | 53430004 ~ 53430560 (+) |
