LOC110498383 (LOC106570236)


Basic Information

Item Value
gene id LOC110498383
gene name LOC106570236
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 51942392 ~ 51992547 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036953829.1
aTGGGGAACTCGTATGCAGGCCAGTTGAGGACCACACGTTTTGAGGAGGTGCTTCATAACTCCATCGAGGCTTCTCTCCGCTCCAACACTGTGGTGCCACGGCCTGTCTTCTCACAGCTCTACCTGGAGGCAAAGCAGCCAACCCTGcacaacggtgtgtGCCGGGTAGAgaatgaggatgaggaggaggaagatggctCAGAGTCCAACAGCCCTCCCGTCCCGTACAAGATGAAGCCCACGCCAGAGGGATGCTGCACGACGGAGGGATTCTGCCAGGCGGGTAGAGACCTGCGTCTATCCTCCCTGGTGTCAGAGCCTCAAGACGTGCCCCCAGGATTCCAGCTGGTAGGGGCCTTGTCTGCAGGCGCACCAGACACCCTGCTGGTGTGTGCAGTCGACCACAGGTTCCTGCCCGATGAACGGGGATGCAACGCACTGctggGGTTCTCGGGGAACTGTATAGGCTGTGGAGAGAAGGGTTTTCGCTACTTCACAGAATTCTCCAACCACATCAACCTGAAGCTGAGCACCCAGCCCAAGAAACAGAAGCACTTAAAGTACCATCTGTACAGGAACAACCAGGGACAGCTGGTCAGAGGGGCTGCTATCTGCTGGAAGGGCCTCGagagcagagggagacagacagtgccCAACGCCTCTGACGGGCATGTAACCTCAGACGATCACTTCCCCAACCCAGCAGTCACCGCTCACCCTGCACACACACCCGGGAactacacagCCAGTTTCCCTTTAGAACCCATTGCCCCCCCTCCCCTGGGCAACGGGAGCCACATCCCCCTATCCCAGAATCCTCTGCCCCAGACTCCCATACTGTCGAAAGGACCTGGGAGACCCACAGTTATAGGTACACTCAATACGGGACCGCCTAAAAAGAGACACAAAGGCTGGTCTCCTGAGTCTTCTGCTGGGGCTGAGTCTGCTGTGAAGACCCccctatcttcctcctcctcttcctcatcactcaCCAATTGGACCAAACCAGACAATGCCCCTCCAGTGAGTCTGTCCCAGGGGTCCTccaactccccctctcctcccggGCCGTCTGTCACAGTGCCTGATCAGCTGCTACACACCTGCAGACTCCAGCCAATCATCTTCAGTGGTCATGGCAGTCTACCTCGGCTGAGTGGTAAGGTGTCTGATGTGCAGGTCAGTTCCCTGCTCCAGAGCTGCTATCAGAACTGCCAGGCCCTGCCCAGCGTCTACCAACACTACGGACCCTCTCCCATACAGCCCCTGTCTGTAGAGATGCAGATACTACTCACTGTGTACTACCTGGTGCAactagGTCCAGACCAGGTCCTGCTGATTGAGGACCTGGAGCAGATCTTCATGCGTTCCTGGAGAGAGTCCCACCTCAGTGAGATTCGCCAGTACCAGCAGCCCCAGCCtggcctctccctcccccaggcTCCCTACACCCTGCCTGGGCTTCCACTGCCCCAGGCCCAGCCtggcctctccctccccctcccccaggcTCCCTACACCCTGCCTGGGCTTCCACTGCCCCAGGCCCAGCCtggcctctccctcccccaggcTCCCTACACCCTGCCTGGGCTTCCACTGCCCCAGGCCCAGCCtggcctctccctcccccaggcTCCCTACACCCTGCCTGGGCTTCCACTGCCCCAGGCCCAGCCtggcctctccctccccctcccccaggcTCCCTACACCCTGCCTGGGCTTCCACTGCCCCAGGCCCAGCCtggcctctccctcccccaggcTCCCTACACCCTGCCTGGGCTTCCACTGCCCCAGGCCCAGCCtggcctctccctccccctcccccaggcTCCCTACACCCTGCCTGGGCTTCCACTGCCCCAGGCCCAGCCtggcctctccctcccccaggcTCCCTACACCCTGCCTGGGCTTCCGCTGCCCCAGGCCCAGCCtggcctctccctcccccaggcTCCCTACACCCTGCCTGGGCGTCCGCTGCCCCAGGCCCAGCCtggcctctccctcccccaggcTCCCTACACCCTGCCTGGGCTTCCACTGCCCCAGGCCCAGCCtggcctctccctcccccaggcTCCCTACACCCTGCCTGGGCTTCCACTGCCCCAGGCCCAGTTCCTCACCCCCTCCCAGCTGCCCTGGCTGGCCAACCTGGCAGCCTCGTCATGTGGGGAGGGAGTGGTGGTTCTGGGGGAGAAGGTCTCGATGGCTCTAGGGTTGTCTGACACCTTCAGTAGGCTGATGGAGGGACAGCTGGCTCATACCAACTATGTGGTCATCATCTGTACAGCCAAGGGACAGGAGACAGAGTCTTgcatggtggtgacaggtcAACACCAGTGTCGTTCCCTGACTGAGGGGATGTTCAGTCCCAGTGATAGTCTGAGAGAGATCAGTCAACAGCTGTCCTCTGGCATAACCCAGGAGCTCACTACCTTCTGCAACTCTCTGGGAcctgaaggtGATGTAGATGTGTTGCTGGAGAGTGCTGCTGTGGAGAACAGGAGCCAACTGACCCCCCTGTCCATCAGTCAGGAGTGTACAGGAGACAGCAGgcctgtagacagacagacagacagagctacaGGCATCCCCAAAGAGCcagccagagacacacacacagacagagcagagagCCCCAAGGACTCCTGctcagagtaccGTGTGGAGTGGCGGGAGGTGCGGCCCATCCAGTTGGTGGTAGCCAGGAAGCTGCTGTCCCATGTGTGCGCCATCGCTGACTCCAGTACTCAGAACCTGGACCTGGGCTCCTTCGACAGGGTCCACTTCCTCATCTGTGTCCCTCCTTCTgaggtcaccttccaacagactGTACTGCATCTCTGGAACTCAGGTGTCCTACAGAATCTGGGGTTGGAGCAAGACTGTCTGTctcagagagaggcagagcgctaCGTGGTGAAGATGGACCAGGAGGCCAGGGCGCGCATTGATGACCTCATACAGGAAGCAAACAGGAACCCCAACACACTCTTCATTCTGGTTCATGACCACGCTCACTGGGACATCAGCAGTGGAGGGTATGGTGCCAGCGGTGGTGACTCCGGCAGTGGGTTGGTGGACAGCCTGCTCAACTCCTGTCAGATCAGAGACGCCAACAACATCCTGACTCTCTACGTCACCTCGTTCCCCTTTGCCCTGcagacacaacacacacgcaTCAGCCCATACAACGAGATACACTGGCCCTCTGCTTTCAATAATgaaGTGGATCTGTACCTTGAGAAGACACAGTACTTTGGTGTGTGTGAGCTGCTGGACTCGACTCGTTCAGGCAGCGGTCTGCCTCTCCTCCGCTACGACAGCTCCTTCGAAAGCACGGCCTCTGTCCTGGAGGAGAGGTTCCCCAAGCTACACAGTGCAGTGATCCGGACCCAGGTTTTAATACAACACTACTGTGTGGCCATGATGGCCGTGTCGGGTCGGTCTGGCTCAGGGGGGCGGAGCCAACATAAACACACCTCCGTCGAGACGCTGGAGATCGTCCAGAGCCTGCTTAGCGCCGCCCAGCGATGCCCCTCCCACCATGGTCACATGGTGCTGCTACGGCTCCCCTCATTGGCTCTGGCAGGGTGGGCCCACCAACGGCTGGTGCGGATCAGacagagactggggctgggggagCTCTTTGAGATCATCCTGGGaaaccccagccaaaccctcagCATAGGACAGAGCTTCACTGAGCGCATCAAGacatGGCTGAAGATCCAGGAGACAGACTGGGTTCCTCGTACCTACCTGGAGCTAGAGGCCCTGCCCTGCATCCTCATCCTCTCTGGGGCAGACCCCCTGGGAGAGTCCCTACCCAGATCACTGAAGTACTGTGATCTGCGTGTGATAAGCTCCTCCTACCTGCAGCGCACGGCATTGGAGCAGGAGCTAGGATTGGCGGCCTACCTGGTGAGGGTGGAGTCCCAGGGGTCACAGCCCCACGGCCACGCCCCCGGCCTGGGCAGTGACCTATCAGAGAGCGACTCAGACAAACTCAATAGCACCGacaatgaggaggaggggggagagaacagTGAGAGATGTTCAGTTAAATTAAATACAACTAAATTCTATATAACTCACCTCTGTGTTCTTCTCTATATCAACACTCTGAAATCGGTTCTCCAGCCCACCCGAACCTTCCCCGACAGCATTGCTGCGGACCCCCTCCATCCCCACACCACCCCCCAAGACCCTCACCGCCCCCCCAACACCCAGCGCCGGCTCTCCAAGTCCACTTCCTTggtttcctcctcccccctacccccctctctccttcagggTTGCTCCTGGGCACGGGGGGTGAGCCGCCCCCCTTCCCTGCTGCTGCCCCGGGGACTCTATGACATCATCAAGGCACGCGACGGGAGCGGGCTGCCTCGCTGCACCTCCTTCCTACCACACCGGTCTGTGacctgggccagctccttcagACCTCTGCTAAGTAAGATGATGACGTGTACAGAACAGTCTCTGTATTACCGCCAGTGGACCATCCCACAGCCTCACCACATGGACAGCAGCAACCGCCCTGCAAAGGGGCGCACAGACAACTTCCATCCCCGCAGACTGCTACTCAGTGGACCCCCACAGGTGGGGAAGACAGGGGCGTACCTCCAGTTTCTGGGCATCCTGTCTCGTATGCTGATCCGACTGATGGAGGTGGACATCTATGATGAGGAAGATATCAACTTCAGTGGTCAGCTGGAGCGTGTCCAGTGCCAGCCAACCTGTGCCTCCTGGCCAGTCACAGACACACTGAGGGGCATTCCGTTTGACTACAGAGTCCACAACCCCAGATATGAAGACATCAGCACTGTCTACTGCCCTGGCTACTACCCCAACACTGATGGAATCCCCAGACGTCAGGAGGACGTGTATCTGCGGAGGCGTACGGCCAGAATCAAACTGTCTAAATACGCAGCCTACAACACCTACCACCACTGTGAGCAGTGTCACCAGTACACTGGCTTCAACCCCGCATACCAGATGTATGAGTTGACCCTGCATGCCTTCACCTTCTCCCACCTGCTGCTGGGGGAGGATATCCAGCTCTACTTCATCATTCCCAAGTCTAAACACCACTACTTCAGCTTTAGCCAACCAGGAGGCCAACTAGAGAGCATGAGACTGCCCCTCACCTCCGATTGGAACCCAGACTGTATCAAGAGTCCCATCTTCACCCCAACAACAGGTCGTCATGAGCATGGCCTGttcaacctgtaccacgccatggATGGGGCGGCCCACCTCCACATCCTGGTCATCAAGGAGTATGAGATGGCTGTCTATAAGAAGTACTGGCCCAACCACATTATGCTGGTGCTGCCCACCATCTTCAATGGAGCCGGGCTCGGTGCGGCCCACTTCCTGATCAAGGAGCTGTCCTATAACAACCTGGAGCTGGAACGCAGCcgcagggtggagggaggagggccGCCAGCCGACGTCTGGCCCTTCATCATCCTCTCTGACGACTCCTGCGTCATGTGGAACGCTGTGGACCTGGACTCACACAGtTCCTCAGGTCCTGTAGAGAGGAACGTGTCTCTGAAGCAGGTTCTGCAGCACATGGAGGCGTGTCCTGACCTCACACAGTTCGGCCTCTGTGGGATCAGGAAGTGGAGCAGTCACTCCCCaggtcagggtcaggggtcagggggagGAGCTCGTCACAGGGAGCCTTTCTCCAGAGGACACCTCCACGACTTCCTGCTTCTAAACGTGGACCTGACCCAGGGCATCCAGTTCAACCAGAACAGgttTACGTGTGATGATGTTGACTTCACCCTGCGAGTCCACAGTGCTGGTCTGCTCATCTGTCGTTTCAACAACTTTAGTGTGATGAAGAAACAGATCTCTATTGGAGGATACCACACCTTCATCATCAAGAACAAGATGACTGATGTCCCCACCTCGGTCCAGCCGTCTCAGTATATCTGTGCCCCGGACAGCAAGCATCCATTCCTGGCCACGCCTGCACAGCTACTGCTAGAGAAATACCTGCAACACTCTAGCCTGTTCCCCCTTAGCACATGCAACTACACACACCCCATACTGTCTGTAGACTGCTACCTCAACCTGGGgcctgaggtgacGGTGTGTTTTGTGAGTTCCAGACCTCGCTCCATCAACATCAGTACTACAGGGCTGCTGTTCAGCGGCCTGTTGCTCTGCTTCTGGGATTCCTTCGTCACGCCAGGATTCCTAAAGAACTTTCACTTCCTCAAAGgGGCGGTTCTGTGTGTGATATGTGCTGACCGCAGCTCTCTGAGACAGACAGTGGTGAGGCTGGAGCTCGAGGACGAGTGGAGGTTCCGGCTGAGTGACGAGTTCCAGACAGCCAACGCTAAAGAGGACCGGCCCCTCTTCTTCCTCACAGGGAAACACATATGAACCCCCCTAACTCCTAAACCCATGAATATCAACCCTCAACCCTGCTGTAGGTTCAAAACAGAAAGCCAAAAACTGTCTGTACTCTTCTAGTGGATCAAGCCAATAACCCATGGAGAGAGTAGCTGCTAGTGAATATAGCTATGAGTCTGCGACTTGTATGGCTCTGTTTACTGTAGCATTGCTGTGGTATTTACTACAATACTCCATTCTTATTGTAGATAATGAAGTATcgtttttttaaatatgttttttgtgATATACAATGATTCAATATTTTGCatatattttgacagttttgtgTCATGTAAAAAGTACTTATCTATGTAAAAGAATGTTTTCTTTAGTGATTTCACACCAGTGTTCTTCAAGAGATGAGAACTCTTATGTGTGTGTGGCTCTCATTTCTGACGCTCCGTGTTTGTGGTCTCCTGATTATCAATATGTTGAGAAACTTGAATTGATGTTGTCATGTTCTATAGACACAATGTCCTGTGTACTGTTATGTTTTACAATGTATAAATGTACATGTTCT
>TU1872037
gagGAGCTCGTCACAGGGAGCCTTTCTCCAGAGGACACCTCCACGACTTCCTGCTTCTAAACGTGGACCTGACCCAGGGCATCCAGTTCAACCAGAACAGgttTACGTGTGATGATGTTGACTTCACCCTGCGAGTCCACAGTGCTGGTCTGCTCATCTGTCGTTTCAACAACTTTAGTGTGATGAAGAAACAGATCTCTATTGGAGGATACCACACCTTCATCATCAAGAACAAGATGACTGATGTCCCCACCTCGGTCCAGCCGTCTCAGTATATCTGTGCCCCGGACAG
>TU1872038
TCCTAAAGAACTTTCACTTCCTCAAAGgGGCGGTTCTGTGTGTGATATGTGCTGACCGCAGCTCTCTGAGACAGACAGTGGTGAGGCTGGAGCTCGAGGACGAGTGGAGGTTCCGGCTGAGTGACGAGTTCCAGACAGCCAACGCTAAAGAGGACCGGCCCCTCTTCTTCCTCACAGGGAAACACATATGAACCCCCCTAACTCCTAAACCCATGAATATCAACCCTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036953829.1 False 6958 mRNA 0.57 33 51942392 51992547
TU1872037 False 292 lncRNA 0.51 3 51990587 51991326
TU1872038 True 228 lncRNA 0.54 2 51991740 51992052

Neighbor

gene id symbol gene type direction distance location
LOC110498087 LOC106571300 coding upstream 1261418 50659972 ~ 50680974 (+)
LOC118936464 adf1 coding upstream 1413049 50526941 ~ 50529343 (+)
heatr4 heatr4 coding upstream 1416029 50520395 ~ 50526363 (+)
LOC118941376 NA coding upstream 1425720 50514922 ~ 50516672 (+)
LOC110498081 NA coding upstream 1504609 50436698 ~ 50437783 (+)
LOC110498384 LOC106570052 coding downstream 11578 52004125 ~ 52035886 (+)
tfb2m tfb2m coding downstream 115095 52107642 ~ 52118171 (+)
LOC110498094 LOC106569575 coding downstream 125921 52118468 ~ 52150151 (+)
hnrnpua hnrnpu coding downstream 569176 52561723 ~ 52576154 (+)
LOC110498099 LOC106568712 coding downstream 591571 52584118 ~ 52600076 (+)
G1636269 NA non-coding upstream 43883 51895405 ~ 51898509 (+)
G1636250 NA non-coding upstream 77741 51864449 ~ 51864651 (+)
G1636246 NA non-coding upstream 81254 51860909 ~ 51861138 (+)
G1636233 NA non-coding upstream 93734 51848437 ~ 51848658 (+)
G1636230 NA non-coding upstream 95807 51846365 ~ 51846585 (+)
G1636327 NA non-coding downstream 107021 52099568 ~ 52101728 (+)
G1636390 NA non-coding downstream 152175 52144722 ~ 52146545 (+)
G1636396 NA non-coding downstream 162744 52155291 ~ 52156011 (+)
G1636442 NA non-coding downstream 296364 52288911 ~ 52291793 (+)
G1636452 NA non-coding downstream 312138 52304685 ~ 52635036 (+)
G1634948 NA other upstream 1331913 50607386 ~ 50610479 (+)
LOC110498078 LOC106572417 other upstream 1687140 50243497 ~ 50265945 (+)
LOC110498072 NA other upstream 1775006 50163645 ~ 50168749 (+)
zgc:193593 NA other upstream 2763990 49160705 ~ 49178402 (+)
G1632650 arhgef10 other upstream 3241824 48699057 ~ 48700568 (+)
G1637065 NA other downstream 758053 52750600 ~ 52755474 (+)
G1637178 NA other downstream 924790 52917337 ~ 52918478 (+)
G1637730 NA other downstream 1437457 53430004 ~ 53430560 (+)
G1638710 NA other downstream 2182249 54174796 ~ 54175130 (+)
G1636311 NA non-coding upstream 25913 51957567 ~ 51964674 (+)
G1636305 NA non-coding upstream 42434 51947494 ~ 51948153 (+)

Expression


Co-expression Network