hnrnpua (hnrnpu)


Basic Information

Item Value
gene id hnrnpua
gene name hnrnpu
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 52561723 ~ 52576154 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955055.1
CAGCACAGATGTCAGTAGTGGGACGTACTTAGAAAGGGTGCGGGTTTGGCGCAGTGGAAATTATAGGCGACTGCTATCACCAAGTCGGCCATCTGTGCACTGGGTTTTATCTTCGTGTTTCGAATTTGAAAAACACAGTCGACAATAGGGATTTTATCGAATTGAATCgatatttatttaattatttaataGATAGCACAATGAGCTCTATCAACGTGAATAAGTTAAAGGTAAACGAGTTGAAGGACGAGTTGAAGAAGAGGCAGCTGTCGGACAAGGGGCTGAAGGCGGATCTTATGGACCGGCTGCAGGCCGCGCTGAATGAAGAGGCTCTAGCCAGAGGAGCTGAGGCCGGGGAGAACGGCGGCCAAGGCGAAGGGGCTGTCGGCCTGAATGACATGGGCGAGGAGGACTTGGATGAAGACCTAgttgaggagaggatggaggcgGGCGGAGTAGAGGATGAAGATAGGTGCGAAGGGAAAGCAGAGAAAGAATGCGCCAATATCGACGATAATATGGGGGAAGAGGAGGATGCGGGAGTAGATATGGATAAATCCGACGAGGATGAAGATGCTctactgaaagaagaagaggatgatgatgatgatgaggagatGGATAAAttcgatgatgatgatgctgcacTGGGGACTCTCGAGAGAGAGGGGGATGCGGACAAAGACACGAGCGCTGAGCAGAAGAATAAGAAGGGTGTTAAGAGACGCCGGGAGGAACATGGAAGGGGCTACTTTGAGTTTATTGAAGAAAGCAAGTACAGCCGGGCCAAGTCCCCCCAGCCCCCGCTGGAGGAAGAGGACGAGGAGTTTGACGACAGCACTGTCTGCCTGGACacctATAACAGTGACCTGCACTTCAAGGTGTCCCGGGACCGTTACAGCGCGTCATCCCTTACCATGGAGAGCTTTGCCTACCTGtgggctggaggcagggcttccTACGGAGTAGCTCAGGGCAAGGCCTGCTTTGagatgaagATCATTGAGAAGATCCCAGTGAAACATATCTCCAGTAAAGGCATGGATATCCATGAGGTTCTGGTGGGCTGGTCACTAGCCAATGGAACACTGTTACTGGGAGAAGAGGAACACTCGTATGCCTTCTCTGCCAAAGGGAAGAAAACCACCAACTGTGTCACAGAAGACTTCGGAGAGTGCTTCGACGAAAACGATGTCGTCGGATGCCTAATCAACTTTGAAGGCTCGGAGGTGGAGCTGTCGTTCAATAAGAACGGTCAGGACCTAGGCGTGGCCTTCAAAGTTGACACGGCATCTTTGGACGGACGGCCCCTCTTCCCTCACGTCCTCTGTCACAACTGTGCTGTAGAGTTCAACTTCGGCCAGAGGGAGGCACCACTGTTCGTCCCACCGGCCGGCTACAGCTTCCTACAGCAGGTCCCTGTGAGCAAGAGGGTCCGAGGCCCCAAAGGGCCCGACACCAAGGATGACTGTGAGGTGATCGTGATGGTAGGCCTGCCTGGCGCTGGGAAGACGGCGTGGGTAACCAAGCACACTCAGGAGCACCCTGGGAAATACAACATCCTGGGAACCAACACCATCCTGGAGAAGATGATGATCGCCAGTCTGAAACGCCAAATGAAGGATGTCACCAAACTCACCGCCATCTCCCAGCGTGCACCTCTTTTCCTGGGAAAATTCATTGAGATCGCTGCACGCAAAAAACGCAACTACATCCTTGACCAGaccaATGTGTCGGCCCCGGCCCAGAGGAGGAAGATGTGTCTGTTTGCAGGCTTCCAGAGGAAGGCCGTGGTGGTGTGTCCTACTGACGACGACTACAAGCAGAGGACACAGAAGAAAGCCGAGACGGATGGTAAAGACGTCCCAGAGCACGCCGTACTCAAGATGAAAGGTATCTACACCCTGCCGGAGCCAGGGGATTGCTTCAGTGAGGTGAGCTTTGTGGAGCTGCAGAAGGACGAGGCCTCCAAGCTGCTGGACTTGTACAAGGAGGAGAGTCGCTCCGCCCTGCCCCCAGAGAAGAAGGCCAACCAGGGGGGCACGCCACCCAAGAGAGGGGGCAACCACCGCGGCCGTGGGGGCAGAGGGCAGGGGCAGTGGGGAGGTGGTCAGGGGCAGAGGGGGGGCAGAGGAGgcttccagatcagaggcaactTCAGGGGAGGCCCAGGACCTCGTGGTGGATTCAGTCGTCCCCCCAGAGGTTTCCTCCCTCCTCCGGCCTTCCGAGGGGGCTTCTCCAACCGGGGCAACTTCAACAGGGGGAGCGGGGGCATGCCCAGCAGAGGGGGTGCACCCAGGGGGGGTCCTGGAAGGGGCAACATGAGGAACATGGGGGGTAATAGGGGAGGCAATATGTACCGAGGCAGCATGACccgcggaggaggtggaggtggaagaGGACGTGGGGACAACAGGGGCAACTTCACACAGAAGTTCAGAGGCAGAGGAGGCAACAATCGCAGCTTCAACAAGAACAGCAACTTTGGCATGAACAAGGCCCAGGCCTTCAACCAGAGCTGGCAGCAGGGGTTCTggaaccagaagccatggagccaacagtaccacccAGGATACTACTGAGCATGTGCGgtagagagactgactgacagcacacagacacacccccTCACTACAAACCCCGTCCACCCCGGCGCATACGCGCCAACTCCCGTTACGCTCCATTTtaccttctcccctcctcctttttcctctcctcttccttcgtTTTAGGAAGAAAGAGCATTCCACTGCTGAGATGGACTGCCGGTTCTGAGACAAAGACAACAAACGCTTTCTGGGCTCCTTTACTTTCTGCGTTTTGATTTTGTATATTTGTATTGCTTTTACGTTTCAGAGCCGGAGCTCTCAAGCGTTCGCCTTCAGAAACCTTGGCTTTCATCCAGCATGTGATGTCTCTTAAAAAACTTTTCAGGGTTCTGTGTTTTTATCTGTAAAGATGTACTTTTTACTACAAcgatcatgatgatgatgatagatATTTCTTTCAGATTCTTTGCTTTACATCatgttgttttatgtttttaAGAATCAGGAGAGGCTAGCACTCACTTCAGACACATAGCATTTGTGAGGTGTCGTAATTCTAGTCCTGCTGCAAATACGTTTGTTTCTAGTAAGTAAAGTGAAGTTTAAGCTGTAATAAAAAATGATatgcttaaaaaaaaa
>XM_036955056.1
CAGCACAGATGTCAGTAGTGGGACGTACTTAGAAAGGGTGCGGGTTTGGCGCAGTGGAAATTATAGGCGACTGCTATCACCAAGTCGGCCATCTGTGCACTGGGTTTTATCTTCGTGTTTCGAATTTGAAAAACACAGTCGACAATAGGGATTTTATCGAATTGAATCgatatttatttaattatttaataGATAGCACAATGAGCTCTATCAACGTGAATAAGTTAAAGGTAAACGAGTTGAAGGACGAGTTGAAGAAGAGGCAGCTGTCGGACAAGGGGCTGAAGGCGGATCTTATGGACCGGCTGCAGGCCGCGCTGAATGAAGAGGCTCTAGCCAGAGGAGCTGAGGCCGGGGAGAACGGCGGCCAAGGCGAAGGGGCTGTCGGCCTGAATGACATGGGCGAGGAGGACTTGGATGAAGACCTAgttgaggagaggatggaggcgGGCGGAGTAGAGGATGAAGATAGGTGCGAAGGGAAAGCAGAGAAAGAATGCGCCAATATCGACGATAATATGGGGGAAGAGGAGGATGCGGGAGTAGATATGGATAAATCCGACGAGGATGAAGATGCTctactgaaagaagaagaggatgatgatgatgatgaggagatGGATAAAttcgatgatgatgatgctgcacTGGGGACTCTCGAGAGAGAGGGGGATGCGGACAAAGACACGAGCGCTGAGCAGAAGAATAAGAAGGGTGTTAAGAGACGCCGGGAGGAACATGGAAGGGGCTACTTTGAGTTTATTGAAGAAAGCAAGTACAGCCGGGCCAAGTCCCCCCAGCCCCCGCTGGAGGAAGAGGACGAGGAGTTTGACGACAGCACTGTCTGCCTGGACacctATAACAGTGACCTGCACTTCAAGGTGTCCCGGGACCGTTACAGCGCGTCATCCCTTACCATGGAGAGCTTTGCCTACCTGtgggctggaggcagggcttccTACGGAGTAGCTCAGGGCAAGGCCTGCTTTGagatgaagATCATTGAGAAGATCCCAGTGAAACATATCTCCAGTAAAGGCATGGATATCCATGAGGTTCTGGTGGGCTGGTCACTAGCCAATGGAACACTGTTACTGGGAGAAGAGGAACACTCGTATGCCTTCTCTGCCAAAGGGAAGAAAACCACCAACTGTGTCACAGAAGACTTCGGAGAGTGCTTCGACGAAAACGATGTCGTCGGATGCCTAATCAACTTTGAAGGCTCGGAGGTGGAGCTGTCGTTCAATAAGAACGGTCAGGACCTAGGCGTGGCCTTCAAAGTTGACACGGCATCTTTGGACGGACGGCCCCTCTTCCCTCACGTCCTCTGTCACAACTGTGCTGTAGAGTTCAACTTCGGCCAGAGGGAGGCACCACTGTTCGTCCCACCGGCCGGCTACAGCTTCCTACAGCAGGTCCCTGTGAGCAAGAGGGTCCGAGGCCCCAAAGGGCCCGACACCAAGGATGACTGTGAGGTGATCGTGATGGTAGGCCTGCCTGGCGCTGGGAAGACGGCGTGGGTAACCAAGCACACTCAGGAGCACCCTGGGAAATACAACATCCTGGGAACCAACACCATCCTGGAGAAGATGATGATCGCCAGTCTGAAACGCCAAATGAAGGATGTCACCAAACTCACCGCCATCTCCCAGCGTGCACCTCTTTTCCTGGGAAAATTCATTGAGATCGCTGCACGCAAAAAACGCAACTACATCCTTGACCAGaccaATGTGTCGGCCCCGGCCCAGAGGAGGAAGATGTGTCTGTTTGCAGGCTTCCAGAGGAAGGCCGTGGTGGTGTGTCCTACTGACGACGACTACAAGCAGAGGACACAGAAGAAAGCCGAGACGGATGGTAAAGACGTCCCAGAGCACGCCGTACTCAAGATGAAAGGTATCTACACCCTGCCGGAGCCAGGGGATTGCTTCAGTGAGGTGAGCTTTGTGGAGCTGCAGAAGGACGAGGCCTCCAAGCTGCTGGACTTGTACAAGGAGGAGAGTCGCTCCGCCCTGCCCCCAGAGAAGAAGGCCAACCAGGGGGGCACGCCACCCAAGAGAGGGGGCAACCACCGCGGCCGTGGGGGCAGAGGGCAGGGGCAGTGGGGAGGTGGTCAGGGGCAGAGGGGGGGCAGAGGAGgcttccagatcagaggcaactTCAGGGGAGGCCCAGGACCTCGTGGTGGATTCAGTCGTCCCCCCAGAGGTTTCCTCCCTCCTCCGGCCTTCCGAGGGGGCTTCTCCAACCGGGGCAACTTCAACAGGGGGAGCGGGGGCATGCCCAGCAGAGGGGGTGCACCCAGGGGGGGTCCTGGAAGGGGCAACATGAGGAACATGGGGGGTAATAGGGGAGGCAATATGTACCGAGGCAGCATGACccgcggaggaggtggaggtggaagaGGACGTGGGGACAACAGGGGCAACTTCACACAGTTCAGAGGCAGAGGAGGCAACAATCGCAGCTTCAACAAGAACAGCAACTTTGGCATGAACAAGGCCCAGGCCTTCAACCAGAGCTGGCAGCAGGGGTTCTggaaccagaagccatggagccaacagtaccacccAGGATACTACTGAGCATGTGCGgtagagagactgactgacagcacacagacacacccccTCACTACAAACCCCGTCCACCCCGGCGCATACGCGCCAACTCCCGTTACGCTCCATTTtaccttctcccctcctcctttttcctctcctcttccttcgtTTTAGGAAGAAAGAGCATTCCACTGCTGAGATGGACTGCCGGTTCTGAGACAAAGACAACAAACGCTTTCTGGGCTCCTTTACTTTCTGCGTTTTGATTTTGTATATTTGTATTGCTTTTACGTTTCAGAGCCGGAGCTCTCAAGCGTTCGCCTTCAGAAACCTTGGCTTTCATCCAGCATGTGATGTCTCTTAAAAAACTTTTCAGGGTTCTGTGTTTTTATCTGTAAAGATGTACTTTTTACTACAAcgatcatgatgatgatgatagatATTTCTTTCAGATTCTTTGCTTTACATCatgttgttttatgtttttaAGAATCAGGAGAGGCTAGCACTCACTTCAGACACATAGCATTTGTGAGGTGTCGTAATTCTAGTCCTGCTGCAAATACGTTTGTTTCTAGTAAGTAAAGTGAAGTTTAAGCTGTAATAAAAAATGATatgcttaaaaaaaaa
>TU1872309
ATGAGGAACATGGGGGGTAATAGGGGAGGCAATATGTACCGAGGCAGCATGACccgcggaggaggtggaggtggaagaGGACGTGGGGACAACAGGGGCAACTTCACACAGTTCAGAGGCAGAGGAGGCAACAATCGCAGCTTCAACAAGAACAGCAACTTTGGCATGAACAAGGCCCAGGCCTTCAACCAGAGCTGGCAGCAGGGGTTCTggaaccagaagccatggagccaacagtaccacccAGGATACTACTGAGCATGTGCGgtagagagactgactgacagcacacagacacacccccTCACTACAAACCCCGTCCACCCCGGCGCATACGCGCCAACTCCCGTTACGCTCCATTTtaccttc
>TU1872307
GGGAGGCAATATGTACCGAGGCAGCATGACccgcggaggaggtggaggtggaagaGGACGTGGGGACAACAGGGGCAACTTCACACAGAAGTTCAGAGGCAGAGGAGGCAACAATCGCAGCTTCAACAAGAACAGCAACTTTGGCATGAACAAGGCCCAGGCCTTCAACCAGAGCTGGCAGCAGGGGTTCTggaaccagaagccatggagccaacagtaccacccAGGATACTACTGAGCATGTGCGgtagagagactgactgacagcacacagacacacccccTCACTACAAACCCCGTCCACCCCGGCGCATACGCGCCAACTCCCGTTACGCTCCATTTtaccttc
>TU1872308
GGGAGGCAATATGTACCGAGGCAGCATGACccgcggaggaggtggaggtggaagaGGACGTGGGGACAACAGGGGCAACTTCACACAGTTCAGAGGCAGAGGAGGCAACAATCGCAGCTTCAACAAGAACAGCAACTTTGGCATGAACAAGGCCCAGGCCTTCAACCAGAGCTGGCAGCAGGGGTTCTggaaccagaagccatggagccaacagtaccacccAGGATACTACTGAGCATGTGCGgtagagagactgactgacagcacacagacacacccccTCACTACAAACCCCGTCCACCCCGGCGCATACGCGCCAACTCCCGTTACGCTCCATTTtaccttctcccctcctcctttttcctctcctcttccttcgtTTTAGGAAGAAAGAGCATTCCACTGCTGAGATGGACTGCCGGTTCTGAGACAAAGACAACAAACGCTTTCTGGGCTCCTTTACTTTCTGCGTTTTGATTTTGTATATTTGTATTGCTTTTACGTTTCAGAGCCGGAGCTCTCAAGCGTTCGCCTTCAGAAACCTTGGCTTTCATCCAGCATGTGATGTCTCTTAAAAAACTTTTCAGGGTTCTGTGTTTTTATCTGTAAAGATGTACTTTTTACTACAAcgatcatgatgatgatgatagatATTTCTTTCAGATTCTTTGCTTTACATCatgttgttttatgtttttaAGAATCAGGAGAGGCTAGCACTCACTTCAGACACATAGCATTTGTGAGGTGTCGTAATTCTAGTCCTGCTGCAAATACGTTTGTTTCTAGTAAGTAAAGTGAAGTTTAAGCTGTAATAAAAAATGATatgcttaaaaaaaaatatatcagTATAATTTAACGAACAGACAGCCCACATAAACAC

Function

symbol description
hnrnpu Enables several functions, including ATP binding activity; basal RNA polymerase II transcription machinery binding activity; and nucleic acid binding activity. Involved in several processes, including protein localization to organelle; regulation of cell cycle process; and regulation of nucleobase-containing compound metabolic process. Located in several cellular components, including chromosome; microtubule cytoskeleton; and nuclear lumen. Part of CRD-mediated mRNA stability complex; catalytic step 2 spliceosome; and telomerase holoenzyme complex. Colocalizes with RNA polymerase II transcription regulator complex. Implicated in developmental and epileptic encephalopathy 54. Biomarker of colorectal cancer.

NR:

description
heterogeneous nuclear ribonucleoprotein U isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955055.1 False 3191 mRNA 0.53 14 52561723 52576112
XM_036955056.1 False 3188 mRNA 0.53 14 52561723 52576112
TU1872309 False 369 TUCP 0.57 3 52574933 52575617
TU1872307 False 349 TUCP 0.57 3 52574956 52575617
TU1872308 True 883 TUCP 0.45 3 52574956 52576154

Neighbor

gene id symbol gene type direction distance location
LOC110498094 LOC106569575 coding upstream 411572 52118468 ~ 52150151 (+)
tfb2m tfb2m coding upstream 443552 52107642 ~ 52118171 (+)
LOC110498384 LOC106570052 coding upstream 525837 52004125 ~ 52035886 (+)
LOC110498383 LOC106570236 coding upstream 569176 51942392 ~ 51992547 (+)
LOC110498087 LOC106571300 coding upstream 1880749 50659972 ~ 50680974 (+)
LOC110498099 LOC106568712 coding downstream 8006 52584118 ~ 52600076 (+)
LOC110498100 LOC106568224 coding downstream 36484 52612596 ~ 52646892 (+)
LOC110498105 LOC106567684 coding downstream 219208 52795320 ~ 52835776 (+)
LOC110498109 1433b coding downstream 470133 53046245 ~ 53061764 (+)
LOC110498110 LOC106566892 coding downstream 490705 53066817 ~ 53097965 (+)
G1636483 NA non-coding upstream 171629 52388786 ~ 52390094 (+)
G1636468 NA non-coding upstream 206480 52349604 ~ 52355243 (+)
G1636460 NA non-coding upstream 232534 52323997 ~ 52329189 (+)
G1636442 NA non-coding upstream 269930 52288911 ~ 52291793 (+)
G1636396 NA non-coding upstream 405712 52155291 ~ 52156011 (+)
G1636602 NA non-coding downstream 83196 52659308 ~ 52661396 (+)
G1636601 NA non-coding downstream 85602 52661714 ~ 52663784 (+)
G1636620 NA non-coding downstream 98489 52674601 ~ 52674995 (+)
G1636629 NA non-coding downstream 106168 52682280 ~ 52685726 (+)
G1636658 NA non-coding downstream 145468 52721580 ~ 52722677 (+)
G1634948 NA other upstream 1951244 50607386 ~ 50610479 (+)
LOC110498078 LOC106572417 other upstream 2306471 50243497 ~ 50265945 (+)
LOC110498072 NA other upstream 2394337 50163645 ~ 50168749 (+)
zgc:193593 NA other upstream 3383321 49160705 ~ 49178402 (+)
G1632650 arhgef10 other upstream 3861155 48699057 ~ 48700568 (+)
G1637065 NA other downstream 174488 52750600 ~ 52755474 (+)
G1637178 NA other downstream 341225 52917337 ~ 52918478 (+)
G1637730 NA other downstream 853892 53430004 ~ 53430560 (+)
G1638710 NA other downstream 1598684 54174796 ~ 54175130 (+)
G1638780 NA other downstream 1664144 54240256 ~ 54240751 (+)

Expression


Co-expression Network