LOC110498111


Basic Information

Item Value
gene id LOC110498111
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 53106681 ~ 53113452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574704.2
ACAGAAGTATCCATTCATGTTGATGCTTTGTGTCAAATGTTGATACAACTGTAACTAAGTTACTTCCCCTTTAAAGTGGTGTTGGGTGGAGCTGCAAAGGAAGTGAAATGTCTATGCGAGTCTTGCCTACACAGAAAGAACCCCAGCCCTGCTACTTTGATGAACAACAACCCAAAATAGCCATAACTGACCAGCCAGTCCAGCGGCATAGAACAAGTTCCAAACTGAGACGGTGCTGGGGGGCTGGAGGAGTGCTGGTGTCATGGTGAACAATGTTCCGGAAGGTCAAAAAGCATCGCAGCAGCTCCCAAAGCAGTAAGATCAGTACCAAGATCAAGGGCGTTCTGCAGAGCCACCCTCTCTACCTGAGTGTGAGGATGCTGTGTTATGATGACGGCCTGGGGTCTGGGAAGAACCTGCTGGCTCTCAAGACCACCGACGCCAAGCAGCAGGAGTGTAGCATCTGGGTGTACCAGTGGAGCAGCGCGGTGAGTGTCTGTGAACAAGGCCAGGCCATCTGCAGGTGTTGTCCGACTGTGTGCTGACATCAGAGAAGTCCTGAAGAGCAGTTGCCCTCAGGGACGTGGTGGAGACAGGAAGCACCATGAACCAGTCGGGAGCCTGGAAAACATAGTTTACAGCAGGGTCACATCAGGGGCGTAGCACAGTCCGCAAGATTTGAGCAAGGCTCCCAATCCcagtcatggggcagagagaaaaatgtgcagttgtatagctaatctcatgctatttaacacattttgccatgaggctgagagaaaatgttgctgttttagagCTCAGGGATTCTTGAAAGACGGGACAATCTCAACTTTCTTAAACagcattttaaatatatattttgaaagaCCAAAGTATCAGCTATCACACCATGTAAAGGAACAACCtatttaaaaaaatttttttttttaaataacatgtTTTCATAAAATGTCTACTCTGTCAGACACCATACATGGCATTTCACTTACAATTGTTGTCCAACAAGTGTTTAAAGGCCTTGATTGTTTCATTCTAACATTTGATTATTCAAATCTGTAATACAAATCTCcaaactt
>XM_021574705.2
ACAGAAGTATCCATTCATGTTGATGCTTTGTGTCAAATGTTGATACAACTGTAACTAAGTTACTTCCCCTTTAAAGTGGTGTTGGGTGGAGCTGCAAAGGAAGTGAAATGTCTATGCGAGTCTTGCCTACACAGAAAGAACCCCAGCCCTGCTACTTTGATGAACAACAACCCAAAATAGCCATAACTGACCAGCCAGTCCAGCGGCATAGAACAAGTTCCAAACTGAGACGGTGCTGGGGGGCTGGAGGAGTGCTGGTGTCATGGTGAACAATGTTCCGGAAGGTCAAAAAGCATCGCAGCAGCTCCCAAAGCAGTAAGATCAGTACCAAGATCAAGGGCGTTCTGCAGAGCCACCCTCTCTACCTGAGTGTGAGGATGCTGTGTTATGATGACGGCCTGGGGTCTGGGAAGAACCTGCTGGCTCTCAAGACCACCGACGCCAAGCAGCAGGAGTGTAGCATCTGGGTGTACCAGTGGAGCAGCGCGGAACAAGGCCAGGCCATCTGCAGGTGTTGTCCGACTGTGTGCTGACATCAGAGAAGTCCTGAAGAGCAGTTGCCCTCAGGGACGTGGTGGAGACAGGAAGCACCATGAACCAGTCGGGAGCCTGGAAAACATAGTTTACAGCAGGGTCACATCAGGGGCGTAGCACAGTCCGCAAGATTTGAGCAAGGCTCCCAATCCcagtcatggggcagagagaaaaatgtgcagttgtatagctaatctcatgctatttaacacattttgccatgaggctgagagaaaatgttgctgttttagagCTCAGGGATTCTTGAAAGACGGGACAATCTCAACTTTCTTAAACagcattttaaatatatattttgaaagaCCAAAGTATCAGCTATCACACCATGTAAAGGAACAACCtatttaaaaaaatttttttttttaaataacatgtTTTCATAAAATGTCTACTCTGTCAGACACCATACATGGCATTTCACTTACAATTGTTGTCCAACAAGTGTTTAAAGGCCTTGATTGTTTCATTCTAACATTTGATTATTCAAATCTGTAATACAAATCTCcaaactt
>XR_002469775.2
AAGTATCCATTCATGTTGATGCTTTGTGTCAAATGTTGATACAACTGTAACTAAGTTACTTCCCCTTTAAAGTGGTGTTGGGTGGAGCTGCAAAGGAAGTGAAATGTCTATGCGAGTCTTGCCTACACAGAAAGAACCCCAGCCCTGCTACTTTGATGAACAACAACCCAAAATAGCCATAACTGACCAGCCAGTCCAGCGGCATAGAACAAGTTCCAAACTGAGGGCGTTCTGCAGAGCCACCCTCTCTACCTGAGTGTGAGGATGCTGTGTTATGATGACGGCCTGGGGTCTGGGAAGAACCTGCTGGCTCTCAAGACCACCGACGCCAAGCAGCAGGAGTGTAGCATCTGGGTGTACCAGTGGAGCAGCGCGGTGAGTGTCTGTGAACAAGGCCAGGCCATCTGCAGGTGTTGTCCGACTGTGTGCTGACATCAGAGAAGTCCTGAAGAGCAGTTGCCCTCAGGGACGTGGTGGAGACAGGAAGCACCATGAACCAGTCGGGAGCCTGGAAAACATAGTTTACAGCAGGGTCACATCAGGGGCGTAGCACAGTCCGCAAGATTTGAGCAAGGCTCCCAATCCcagtcatggggcagagagaaaaatgtgcagttgtatagctaatctcatgctatttaacacattttgccatgaggctgagagaaaatgttgctgttttagagCTCAGGGATTCTTGAAAGACGGGACAATCTCAACTTTCTTAAACagcattttaaatatatattttgaaagaCCAAAGTATCAGCTATCACACCATGTAAAGGAACAACCtatttaaaaaaatttttttttttaaataacatgtTTTCATAAAATGTCTACTCTGTCAGACACCATACATGGCATTTCACTTACAATTGTTGTCCAACAAGTGTTTAAAGGCCTTGATTGTTTCATTCTAACATTTGATTATTCAAATCTGTAATACAAATCTCcaaactt
>TU1873064
CACAGAAAGAACCCCAGCCCTGCTACTTTGATGAACAACAACCCAAAATAGCCATAACTGACCAGCCAGTCCAGCGGCATAGAACAAGTTCCAAACTGAGGGCGTTCTGCAGAGCCACCCTCTCTACCTGAGTGTGAGGATGCTGTGTTATGATGACGGCCTGGGGTCTGGGAAGAACCTGCTGGCTCTCAAGACCACCGACGCCAAGCAGCAGGAGTGTAGCATCTGGGTGTACCAGTGGAGCAGCGCGGTGAGTGTCTGTGAACAAGGCCAGGCCATCTGCAGGTGTTGTCCGACTGTGTGCTGACATCAGAGAAGTCCTGAAGAGCAGTTGCCCTCAGGGACGTGGTGGAGACAGGAAGCACCATGAACCAGTCGGGAGCCTGGAAAACATAGTTTACAGCAGGGTCACATCAGGGGCGTAGCACAGTCCGCAAGATTTGAGCAAGGCTCCCAATCCcagtcatggggcagagagaaaaatgtgcagttgtatagctaatctcatgctatttaacacattttgccatgaggctgagagaaaatgttgctgttttagagCTCAGGGATTCTTGAAAGACGGGACAATCTCAACTTTCTTAAACagcattttaaatatatattttgaaagaCCAAAGTATCAGCTATCACACCATGTAAA

Function

NR:

description
integrin beta-1-binding protein 1-like isoform X1

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574704.2 False 1079 mRNA 0.45 4 53106681 53113452
XM_021574705.2 False 1067 mRNA 0.45 4 53106681 53113452
XR_002469775.2 False 966 mRNA 0.44 3 53106685 53113452
TU1873064 True 661 lncRNA 0.49 3 53106810 53113272

Neighbor

gene id symbol gene type direction distance location
LOC110498110 LOC106566892 coding upstream 8716 53066817 ~ 53097965 (+)
LOC110498109 1433b coding upstream 44917 53046245 ~ 53061764 (+)
LOC110498105 LOC106567684 coding upstream 270905 52795320 ~ 52835776 (+)
LOC110498100 LOC106568224 coding upstream 459789 52612596 ~ 52646892 (+)
LOC110498099 LOC106568712 coding upstream 506605 52584118 ~ 52600076 (+)
LOC110498114 LOC106566507 coding downstream 146278 53259730 ~ 53342222 (+)
LOC110498117 LOC106566340 coding downstream 229021 53342473 ~ 53444115 (+)
LOC118941378 NA coding downstream 493881 53606967 ~ 53609550 (+)
LOC110498124 LOC106565365 coding downstream 1604321 54717773 ~ 54815955 (+)
LOC110498125 LOC106565054 coding downstream 1799008 54912460 ~ 54923456 (+)
G1637184 NA non-coding upstream 178949 52927353 ~ 52927732 (+)
G1637109 LOC106567335 non-coding upstream 264194 52840946 ~ 52842487 (+)
G1637105 NA non-coding upstream 317159 52789317 ~ 52789522 (+)
G1637098 NA non-coding upstream 327909 52778542 ~ 52778772 (+)
G1637075 NA non-coding upstream 348380 52756232 ~ 52758301 (+)
G1637290 NA non-coding downstream 928 53114380 ~ 53175260 (+)
G1637293 NA non-coding downstream 3275 53116727 ~ 53119961 (+)
G1637627 NA non-coding downstream 139327 53252779 ~ 53253015 (+)
G1637631 NA non-coding downstream 141551 53255003 ~ 53255733 (+)
G1637178 NA other upstream 188203 52917337 ~ 52918478 (+)
G1637065 NA other upstream 351207 52750600 ~ 52755474 (+)
hnrnpua hnrnpu other upstream 530527 52561723 ~ 52576154 (+)
G1634948 NA other upstream 2496202 50607386 ~ 50610479 (+)
LOC110498078 LOC106572417 other upstream 2851429 50243497 ~ 50265945 (+)
G1637730 NA other downstream 316552 53430004 ~ 53430560 (+)
G1638710 NA other downstream 1061344 54174796 ~ 54175130 (+)
G1638780 NA other downstream 1126804 54240256 ~ 54240751 (+)
LOC110498128 LOC106610688 other downstream 1854905 54968308 ~ 54969856 (+)
LOC110498153 LOC106561476 other downstream 2814196 55927603 ~ 55932079 (+)

Expression


Co-expression Network