LOC110498129 (LOC106564756)


Basic Information

Item Value
gene id LOC110498129
gene name LOC106564756
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 54974692 ~ 54987042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574730.2
TTTCGATCCATCTCTTAGGGTTGGCGAAAAGTCACTTAGAAGTGGCGTGTTTTTAGGCAGACCCTcgcctctcccttccccccctttgcgtgtgcgtgtgcgatTCTGGCAGCGTAACATCTGTGCGTACGCGGTCGTGATTGTGTTGTGAAGATggcggagggagagacagagaaggaataTGCCACAAGAAAAGCTATCGAGCGGCTCCGAGAACGGTTCCAGGAATTGTCTACAACACTTAAAGAAAGCCCGGAATCGCCGTCGGACGCCTCTTTGCGTTTCTGCCAGGAATTCTGCCAGATCCTTGTGGAACATGCAGGTCGATGGAAGGCTGAGGAGGAGCCGCTGCCTTTACTGGAGGTGTACACAGTGGCCATACTCAGTTATGCAAAGGCCATCACCTGTCTCTCCTCCGAATGTGAAAACGTGCCACTCGTACTTGAAAACCTAGGACTGAGCTGTGTGGAGCTCCTGCTCTCATTGCCTGAGAGTGTCCCTGGTGCCTTATGGGAGGAGTTCCAGTCCTGTGTCAAGTCGGCACACAGCCTTCTGCAAAAACATGGGAACACACAGCTTCACATGCTATCAGCTATGGCACAGGAGCCTGGCGTGTGGACCAACACCACTTTGTGCAGCATTCTGTCTAATGAGATGCCTGAAATTGACAGAGTTCATGAGTTCCTGCAAATGGAAGGTCCCACACTCCTTAATATGCGAATAAAGCACCTTATCAAACAGAATCGAGCAGAGAAAGCAGCTGTCTTAGCGAAGATGTGCTCAGAGTATCCAGAGTATGAAGGAAAGGGGAACTTCAAGCAGACGTACCTTGTTTGCCTGTGTATGACAAAAACACAAGAACAACTCATGCAAGAGATCATGCAGGTAGACTGTAAGGATGGATTGGAGATGATTTGTAACCTGGAGTCGGATGGGGATGAAAAAGGAGCCCTTTGTTTGTGCTCTGCATTCCTTGAGCGGCAGCTTCTCCAGGGAGATGTGTATTGTGCCTGGGAGCTCACACTATTCTGGAGCAAGCTTTTAATGCGGTCAGAGTCTTCAGCTGATGCATTTCTTGGTGAATGCAGAAAGTTGGTTCTGCTTTCCAGGAGCGTCTGTCATATCCTCTTCCTCATCAAGGTTATCCAATCGGAGGTTGGAGAAGTGGGACTGCCGGTGTGCATTGAAATGTGCATTCAAGCTCTACAAATGGCATCCAGTGACAACACGGACAGCAGGACCACCATCTGCAAAACTATTTCCTGCCTTTTGCCCACTGATTTTGAGGTGAAACGGGCATGCCAACTAACAGAGTTCCTCTTTCAGCCAACTGTGGACTCATATTATGCTGTTGAAGCACTCTATAATGAACCTGATGAAAAGCTTGAGGACGAGAATCTTCCAGTACCCAACTCACTACGCTGTGAGTTACTGTTGGCCTTGAAGACACAGTGGCCTTTTGATCCAGAGTTCTGGGACTGGAGAACCTTGAAGCGCAATTGTTTGGCATTGATGGGTGAGGAGGGATCCATTGTGTCATCTATCGACACTCTCAATGACGCAGATGAGGGACTTGAGGATGATGCAGCAGAAAAAGGTCCAGAATTCAAAGACCTTGAGGACTTTATTTTGAATACTACAAATGAATTGAATGAAATTGCAGATGAAAAAGAGAAAAATAGGGAAGCTAAGAAATTAAGGGAGAAAGGGTTTGTATCTGCAAGATTTAGGAATTGGCGAGCCTATATGCAGTATTGTGTTCTATGTGATAAAGAGTTCCTTGGCCACAGGATAGTCCGCCATGCACAGAAGCATTTTAAAGATGGGGTCTACACCTGTCCAATTTGTGCTGACAGCTTTGACACTAAGGAGATTCTTGAGCCACATGTAGCATCCCACGTGAAGCAGTCTTGCAAAGAGCGACTTGCTGCTATGAAAGCAACAAGGAAATTGCCCAAGCCAACACAATCTACCAGTAGTCATTGTAATAATTTTAAAGACGGAGCTGTGGTGAAGCTTGAGGCAGAGACCATTGTCAGTCCAAATGATGCTCATTCTCTGGATGGAAATTGCAACAGTGCTGAAACGGTCAAAGTCAGTCCTCCAAAGCCTGTACAAACTAAGGTCAGTCCTCAAAAGCCTGTACCAACTAGATATGAAGCAGAATTTACTGAGGATTGTGTCTGCCCTGTTACATACTGTCAGAAGGTATTCAAGTTTTTTCGGAGTCTTGTAACGCATGTAAAAGCCCACAAAAATGACGAGGAAGCAACACGTTTTCTGGAGATACAACGACAGAAGGTTGTGTGTCAGTATTGCCGTCGGCAGTTTGTGAATTCCAGACATCTCAATGATCATTTGCAAATGCACTGTGGCGCTAAGCCATACTATTGCATACAGCTGAATTGCACAGCCAGCTTTCACTGCAATTCGGAACTTCTCATGCACAAAAAACAACACACTGACTTTAAGTCACAGTGTATGTTTCCTAATTGTGGAAGGATTTTCAACGAGGCCTACCTGTTGTATGATCATGAGGCACAACATTACCTTACATTCACTTGCAAAATAGCTAATTGTGGGAATATTTTCTATTCACAGTCCCAGCTAAATTTGCATCAGCAGAACCATGACACTAATGAAATGCCCGTCGCAAGTGAGAACAATCCTATACCTGAAATAGAACCTTCCACCCAGTGCTCCGCTAGGCAAGAGGAAACCTGCTCTGCCTCTGTCAATCTAGATCAGAAGACGGCACAGGATTATGTGACGGAAGAAGTGGTTAAATCAGGTTCGTCAACAGTTCCTGAGAACCCAAAATGcccaatgaaaataaaacattcagTCGAGAGTATGTTGAGCAGTTCTGTTGTCAATCCCAGAAAGGAGTTTCGGAAGTGTTATGTTCCACTGATCAAAACTAAGCTGGGATTGGAGAATGCAAAACTATCTCCTGTCGTCCCACGCCAAGAAATGATAGCAAATCATGTGGATCCCCAATATCACTGTGGAACAAATCCTTTGAAAGGGTGCCCAAAAGAGGAGCAGAATAACAGACCAACTGAAGCTGTTCAGAAAGTGTTACCACAGGCCTTTCCTCCACGAGAAATTAAGAGTGAACCCCCATTTATTCTACATCCATATCAAAACACTCCTGCAATAACTGGTAGAGATGAGGATGAGTATAGTTGTCCACTTGAAGCATGTGACCGCAAATACAGTACCTCCAAAAGTCTCTCCCGACATGTAAAGAAAAACCATCCAGACATTTTTGAAGACTGGAAACTGGCAAAGAAGTACAAGAAAGTTGTCAAAATAACTTCGAGAAAGGTTCCATCAGTGAACAAGACTTCACAGGACCCAGAGAACAAAACATTACTTCATCAAGCACCACTATGCAGCAATAGTGGATTACAGCAGTTTGAATATCCGGTGGCATGTTCAAATTTACCTGTAATTTGCCCCGTTTGGGAAACCCCCCCAAACCAGACTGGTCTAATGCAGTCCGAGATGGGTGACTCATGGACATCTACATTGAACGATTGCTATGCAGAGGTCTTCCATCTGAATGAATACCCCAATAAGAGCATAACTCCTTGGCAATCAGAACCGTATCAACTGTTGGAAAGGGGCAGAGAACATACACCAGCAAATATGCATGATAGTGCCATCCAACCCATTAAATCAGAGTCAAGTCTGATGAATCAGATGTCGGAATATGTGTCAAGCTCTCTTATGCTGGATAATGGAGGACAACACTATGGGATAACTAATTCTGGGGATAATGTTGATGTTTCCCTAATGGGAAAAAACTATTCCAGTATGTCTGGCCAAGAAAGTAACAATTTGTCAGCTGGAGGTTCCCATGCTTCATATGTCCCAAATGAATATGTCCTTAATTCAAGGGCATCAATAGACATTCCAAGCAATGCAGTGAGCCATGATGGCCAAGTAGCACCAAGAAACACAGTGGAGATGACCAACATGGAGGATGTAACTCATCTTACATCACCCAATTATGAGAATCAGATGAGCAGCTCTGTAGATGAAATGCTTCTTAGTCCGCATGCTTCTATCCAAAAAGATTTATCGTACAACGAGGACACTCATGCAGAACCTGAAGCTATCCCTGCAGACGAGAAGATTGCTGATCATGAGACACAGAAAGTAAAACGCTGCAGACTCAGCAAGAGAACGAAATGGCCTGCTATCATAAAGGATGGCAAAGTCATCTGCCGAAGATGCTTTAGAGAATTCTCAAGCACAAAGTCTCTCGGAGGTCATCTTTCAAAACGCTCCCAGTGCAAGCCATTAGTTGAAATGGACTTAACGGCTGATTTGCCTATGTCATTTCTCGACTTTCTCAATGACCCAAATGTTCCTGAAACTGGATCAATATACAACATACTAAATGGTGAATTCCCACAGGAAGGTGTTGGTAATCCCTCCACGCCAAATCCTTCTAATTTGTCACAAAAGGAAACCCAAAAACCACTGGATTCTCAATCATCAAACACTTTTCCTTCAGTTTCGGCCGGTAGACAATCCAAACTCAGCCCAAATAAAACAGTGTGGATAGAATTGAAAGAGTCAAAGAATTATGCTGGCAGTCAGCAGGATGGGGAGTCAAAAGGCAGTCTTGCTGAAAAAAGGTCAAGTGCAACTTCCTTTGCGGCATGTCAAGATGACAAGGTTATAGAAATTCAAAATGCCCTACAAATGTTGGATTTAGTTGAAGCTGCACATGAGAAAAGTTTGCAGGAAACTTGTTCCTCAAAGTACAGTGGCAGCCAAAGCAATGCAATCTCAAGCTATAATGTCATGCAAAAAGATAATGTTCAAAACACGACAACAAAAACGATTGTCAAGAAGGAAGACCAGAATCGTGACAATGGCCCCAAGCCGTTCAAGTGTGAAATGGATTATTGTGAATATGGGTTCATGACAAAAGAGGCATTATTCAGACACCTTGGTAGAGTTCATGATTACACCATTGAGATGATTGAGGAACTCAAGAAAACCCCAGTCAAATTCTCTCCATATCCTTGTTACATTTGCCCAAAAACATTTACCAGAACCACAGGCCTAAGAATTCACTATGAAAAAGTCCACCACCTGACGCAGGCAGAGATGAACAAGTTAAAGGTCGGAAATCGCAAAAAAAGGTCAAGCAACCCCAATATTGAAACAGAGGTAGAGAGTAGTCATGGAACTGGATCTGCAGTTGTGTCAACTTTCATCAAACAAGAGCCAATTGATATTGACACTGGCTGTTCAATTCAAAGCACAAATCAAGACGGCCATGCACAATCCTCTGAGATCATTACAGCTGGAGATGCAGTTCAAGAGGATTCCATGCATCAATTAACAGTTGAGAGAGTGCAATCACCACAAGATACCTTGGATGACTTGGACAAGTCATTTTACGAATTAGAATCACCATCAAAGACCAGATATACCAAGAATGAGACATTAATGACAGCCTCACAAATTAACCACACTCCAGTGTTGAAGCAAAAATTAGGTCAAGGTGACACTGCGGAAAGGCCAGCTGCACGTTCCGATGCTAGATCTTTTAGCCATGCAACAGAGGTGGCATCCAGCCAGGCTGTGAAACCCTCACCAGAAAAAGCAAGTTGTTCAAAAAACACAATATCCAAAGATGAGGTTCATTTCCAAAGGAAAGAAAAGGTTCAGAAAAGGTTGGGGCTTCAACTGTGTGACGCTGACAATTCTTTCAGCCCATATAGGCCCTACCGTTGTGTTCATGAAGGATGCGCTGCAGCCTTTACCATCCAGCAAAATCTGATCCTTCACTCCAGGGCTATGCATCAGTCATCCCTTCCCTTGTCTTCAGGAGACCTTGATACTGTAAAGGCTGTCACTGGTGAACAAGCTGCTGAAGTGGAGAATAATGAAATCCGATGTCAAGTGAAAGACTGTTCAAGGATATTTCCAGGGATTACAACCTTGGTGCAGCATTACCTATTGCTTCATAAATTCACTCGAGATAAAACCACTGCTATGATGTCAAGCCTCAATATCGGGACATTCCAGTGTGACCGGTCAGAATGTACACTCTCCTTCACCTCTGTGGAGAAATACATTGACCACATCAAAAACTTTCACAAGGAAATAAACATCTCTGAGAGAGGCAGTGTGGATCAGACTTTCAAGTGTGGGTATGATGGCTGTGACCGGGTCTACACTACAAAGTCAAACCTCCTTCGTCATGAGATGAAAAAGCATAATTTAATTTATATTCCCAGAACACAGCAACAGAGAACAACATGCGTCAAGCCCAACAATGGCAAAGAGAACAATGAAAACGCAGTCAAATTGAACAAGAAGAACACTAAGAAAGATGACGGATCGCTCGACCACTGGACTAACTTTGGAAAACCCTCTCTGAAATCTATGGATGAGGCATCTGCCATCTGCACCCAAAAATTATCTTTGCAATATCCATGCATGATAAAAGGCTGCGACACTGTTGAACGGACTGAACGGAATATATTCAAACATTACACCACACATGGCCTCACCGAGAAATatatagaggatcagagaagcCAGTTTATGTTCTGTAAAAAGTACCCACGCTCAAGAGTCAAAGATGCAAACAAATCCGAGGGTATGTCAACAGACTCCTCTGAGGAGTCGGACCCTGACGAGGATGAGCCTGAGACTTCAGAGACCAACTGTCAGAGGCAAGAAGTGTTGGATGGTGATATTCAAGCAGAGGCTAAACTTTCAACTGATGAGATTTCTGAATCCCAGTATTTTACTTCAGAGGTCAAAAAGAGGGGTTGCCCCCGAAAATCAGAGCGGAGAGCATTAGCTTGTCCGGACAGAAGGTTGACTCTGAGAAATCGGCCGGCAGATAAAGTTCACCAGTTGACAGAGGCTTCGGACCAGGGCTCCACTGCTTCTCAAGAGGAAGAAAGCAAGGGCGGTGTTGCACTGGACAGTTTCCCGAAGTTCCTGGATACTTCACCACCGACCCACACTCCCAAAAGAAAAATTAGTGGAGGTTCAAGGAGTGAGTTGCCATTAAAACGACAGCGTACCCTTAAGCAGAAGACCGCTAATATTATGTCCGCAACACCTGATGAAGTTATTGGAGCCTGTCAAAACCTTGTAGACTTCAGAAATCCTCAAAATCTTCAATCCGTGAACAATGTGAAGATTGTAATGGACAAAACCTTTTCCAACGGTGCTGATCTTTTGCTAAAGCAACTTCAAGATATGCGACCCATGGTTATAATACAAAAGTGGCTTTATAGTTGATGGATTGCTCACAGCCTGATGCTTTTATTTTCGACTAACTCAGGATTAGAAAAGTAACATGCTGCAAACAGATCTGTTAATATTGTATCAGATATCCAATGGTAAACAGTTTTGACCATTAGACAATTGAAGATGGAGTATTTTCTACTTATGACATGTTATTGTTGATTTTAAGTTTGGATAATGTATGTTACTCATATAAGAACCAGGTAATCTGTAGGGAACATAGACTTTAGAAcatgtttgtatttattaggcTTCTAGTACTAAAATTGTTTTTTGCTAAATTGATAATTTTAAGGAAAAACAAAAGTTTTTATATATCCCTATGggattttattttttgtttgtatttattttatttttaaacactATCTGTAATATTTACATGTCTTCCACAAAGTGTTCAATAAAATGTAACTGTTTGCTTTTATAAAAGTTGATGTACAGAA

Function

NR:

description
zinc finger protein 292-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574730.2 True 7742 mRNA 0.43 8 54974692 54987042

Neighbor

gene id symbol gene type direction distance location
LOC110498128 LOC106610688 coding upstream 4836 54968308 ~ 54969856 (+)
LOC110498386 htr1e coding upstream 6153 54964835 ~ 54968539 (+)
LOC110498125 LOC106565054 coding upstream 51236 54912460 ~ 54923456 (+)
LOC110498124 LOC106565365 coding upstream 158737 54717773 ~ 54815955 (+)
LOC118941378 NA coding upstream 1365142 53606967 ~ 53609550 (+)
orc3 orc3 coding downstream 696 54987738 ~ 54996574 (+)
LOC110498133 LOC106563926 coding downstream 150373 55137415 ~ 55176085 (+)
LOC118941490 NA coding downstream 239811 55226853 ~ 55228876 (+)
si:ch211-15d5.11 LOC106563256 coding downstream 388493 55375535 ~ 55403366 (+)
rlf LOC106563209 coding downstream 441404 55428446 ~ 55444908 (+)
G1639477 LOC106564860 non-coding upstream 28968 54945322 ~ 54945724 (+)
G1639475 NA non-coding upstream 32200 54941208 ~ 54942492 (+)
G1639490 NA non-coding upstream 45900 54928557 ~ 54928792 (+)
G1639459 NA non-coding upstream 96237 54878067 ~ 54878455 (+)
G1639458 NA non-coding upstream 96911 54877249 ~ 54877781 (+)
G1639522 NA non-coding downstream 16879 55003921 ~ 55004629 (+)
G1639549 NA non-coding downstream 57777 55044819 ~ 55045070 (+)
G1639550 NA non-coding downstream 58122 55045164 ~ 55045469 (+)
G1639551 NA non-coding downstream 58807 55045849 ~ 55046055 (+)
G1639554 NA non-coding downstream 61867 55048909 ~ 55049135 (+)
G1638780 NA other upstream 733941 54240256 ~ 54240751 (+)
G1638710 NA other upstream 799562 54174796 ~ 54175130 (+)
G1637730 NA other upstream 1544132 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2056214 52917337 ~ 52918478 (+)
LOC110498153 LOC106561476 other downstream 940606 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1513115 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1522887 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1838910 56825952 ~ 56830309 (+)
G1641935 NA other downstream 2148784 57135826 ~ 57143925 (+)

Expression


Co-expression Network