LOC110498135 (LOC106564204)


Basic Information

Item Value
gene id LOC110498135
gene name LOC106564204
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55195487 ~ 55213703 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955107.1
ATGCCCATTTATAAAATACCTTAAACGACAATATTGCCCCCCCACCCGGGCTCAGATCCAATCCCTCAACCTTGCCAACCACGCGCCTTCCCCTCCACAACGGCAACCAATCAAGCCAGAGGCAATGGGTAGAAAAGAGCAGACGTTCTGTGCTCTCCAACCAGGACCAAGCTAACTACACTGGCTTACAACAGTTGCTTTCTTATCCATTTCTACCTTTTGACTGAGAAGAAGATGAGGGTCATCAATATCGGTCTTCTGCTGGTTTGTGCAGCCTTTGCTCAGTCCTTCAAGTCTCAAGGTGGGGGGAATCTGAAAGAGGAGGACATGTGGGGGGACTACCTAATGGACAGAGATGACAACCATGCCGAGatCAAAGCTGTCCTTCCAGGTACCTGCTTTGCGTGTAAGCGCATCATCAACAAGGTCAAGGCCCAGCTGGATGGTGATAATAACAAGGATAACATATCTGCTAAACTGGACTCTATTTGTGGCAGCATGGGGATGCTCAAAGCCATCTGCAAGAAGCTTGTCAATAAATACAAAGAAAAACTGATTGACGAACTTGTCAATGATGAGGACGCAAAGGATGCCTGTAAGAAATTGAAGCTATGCAAATAAAATACCATTTACCCATGATTGCCCTGGGCACACGTTTCTTTCAGATGAACACGCTGTCATAGCTTAGCTTAAACATTATTTTCATGGATGGAATGGCAGTCTTTAAAGTCACTTAACATTGCTAAAGACTGACATTCCATccagacagaagagacagaggactggccacccatcagagcctggttcctctctaggtttcttcccaggttcctgcctttctagagagtttttcctagtcaccatgcttctatatctgcattgcttgctgtttggggtttttggctgggtttctgtatagcactttgtgacatcgggtggtgtaaaACAGGCttcataaatatatttgattgattgattgattacaactgcaatttttatttaattaaatacTGAAGGT

Function

NR:

description
saposin-C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955107.1 True 1018 mRNA 0.44 4 55195487 55213703
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498583 NA coding downstream 88922 55104319 ~ 55106565 (-)
LOC110498132 LOC106564610 coding downstream 99246 55069318 ~ 55096241 (-)
LOC110498131 LOC106564706 coding downstream 181766 55010567 ~ 55013721 (-)
LOC100499589 LOC100499589 coding downstream 188748 55003914 ~ 55006739 (-)
trnaa-cgc-3 NA coding downstream 215900 54979518 ~ 54979587 (-)
LOC110498134 NA coding upstream 19097 55232800 ~ 55256348 (-)
stac LOC106563602 coding upstream 48751 55262454 ~ 55314573 (-)
mtfr1l mtfr1l coding upstream 151671 55365374 ~ 55375139 (-)
selenon selenon coding upstream 190167 55403870 ~ 55412512 (-)
znf593 zn593 coding upstream 200759 55414462 ~ 55415751 (-)
G1640047 NA non-coding downstream 19046 55138338 ~ 55176441 (-)
G1640044 NA non-coding downstream 49109 55133034 ~ 55146378 (-)
G1639939 NA non-coding downstream 72688 55117559 ~ 55122799 (-)
G1639918 NA non-coding downstream 109036 55086205 ~ 55086451 (-)
G1639912 NA non-coding downstream 120719 55074296 ~ 55074768 (-)
G1640116 NA non-coding upstream 12531 55226234 ~ 55226448 (-)
G1640119 NA non-coding upstream 15074 55228777 ~ 55228978 (-)
G1640272 NA non-coding upstream 54432 55268135 ~ 55268613 (-)
G1640309 NA non-coding upstream 109160 55322863 ~ 55323128 (-)
G1639267 NA other downstream 613136 54582006 ~ 54582351 (-)
G1638677 NA other downstream 1041382 54145197 ~ 54154105 (-)
G1636861 NA other downstream 2839338 52350969 ~ 52356149 (-)
G1636669 NA other downstream 3296979 51896788 ~ 51898508 (-)
G1635971 NA other downstream 3669067 51525986 ~ 51526420 (-)
G1641074 NA other upstream 732870 55946573 ~ 55946964 (-)
G1641501 NA other upstream 1366785 56497389 ~ 56584678 (-)
LOC110498158 ctl2b other upstream 1577148 56790811 ~ 56794401 (-)
G1641881 NA other upstream 1770561 56984264 ~ 56984709 (-)
LOC110498390 LOC106612640 other upstream 2091023 57304724 ~ 57400864 (-)

Expression

LOC110498135(LOC106564204) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110498135(LOC106564204) Expression in each Bioproject

Bar chart with 21 bars.
LOC110498135(LOC106564204) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network