LOC118941490


Basic Information

Item Value
gene id LOC118941490
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55226853 ~ 55228876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955108.1
gattattaaaccattgttaattcggcattgtctgcatctgggtcttaccttcatacctgatagtaGTGATGGCTCCTCTGTAAGTAAAATTCATGTCAACTAGTAATGTTTAAACTGAGAACTCAACACTGACATATTGGGTGATAGTACTATGTCTAACTGCCTGGTTAAGGGCATACCATGAGATCTGGGATTTGATTGGTCCCTTGCTGAAAATGGAAAAGGAGTCACAGAGAACATGGTTCTGATTGGTTATTTGTGTGTTCCACAGGATGACTGCTCCCTGACCCACCTGAATCTGGCGGGAAATGGACTGATGGACAGCAGCATTTCCACCCTCGCCAGgtgtctgcctctctgtccctccatggTGTCTGTGGACCTGGCATGGAACCCAGCGGTGACCTCAGCGGGACTCCACAGCATCCTCTCCAACCGGCGACCTTTGACCTATCTCAACCTCCAAGgTTGTCAGGTAGCCGGACCCTGGGACAGCTCTAGTTTGGACGACTTGTCAGACCAGGTCCAGGACCTGTGGCTGTGCTCCCAGGTGCTCAACAAACTGGACTGCAAGGCGCTGCAGCAGATCTGGGGCCAGAGGAGGCCCGGGGGCTGCTTCCTCTCCAGGGATGCCAAGTGCCTGCTCACTACTGCCCCTTTACTGTGAGGAAGACTCCTTGAGTTTTCACACCTTTAAAGACTGGTGTCGCTTCGATTCCAATGTGTACACTTGAGATGATTTACACTCCTTGGTCCTCATATTTGAGGCATCTTTTGGTGACACAGGCTGCAGAGGGATCTCGGCACCAATATTTTGAATGCATTATGTAGGTATAATTATTACAGGGTGtgtgtgggaactctttcaagactgttggaaaagttttcctcaagaagctggttgagagaatgtcaagagtgaaaagctgtcatcaaggcaaagggtagctagctacc
>TU1876084
TTCTCAGTCTGATTCTGTCGCTTTCTTAGTCCTAAtttgttacctctctctctctttattcaggTTGTCAGGTAGCCGGACCCTGGGACAGCTCTAGTTTGGACGACTTGTCAGACCAGGTCCAGGACCTGTGGCTGTGCTCCCAGGTGCTCAACAAACTGGACTGCAAGGCGCTGCAGCAGATCTGGGGCCAGAGGAGGCCCGGGGGCTGCTTCCTCTCCAGGGATGCCAAGTGCCTGCTCACTACTGCCCCTTTACTGTGAGGAAGACTCCTTGAGTTTTCACACCTTTAAAGACTGGTGTCGCTTCGATTCCAATGTGTACACTTG

Function

NR:

description
tonsoku-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955108.1 False 957 mRNA 0.49 3 55226853 55228876
TU1876084 True 329 lncRNA 0.53 1 55228324 55228652

Neighbor

gene id symbol gene type direction distance location
LOC110498133 LOC106563926 coding upstream 87825 55137415 ~ 55176085 (+)
orc3 orc3 coding upstream 230279 54987738 ~ 54996574 (+)
LOC110498129 LOC106564756 coding upstream 239811 54974692 ~ 54987042 (+)
LOC110498128 LOC106610688 coding upstream 256997 54968308 ~ 54969856 (+)
LOC110498386 htr1e coding upstream 258314 54964835 ~ 54968539 (+)
si:ch211-15d5.11 LOC106563256 coding downstream 146659 55375535 ~ 55403366 (+)
rlf LOC106563209 coding downstream 199570 55428446 ~ 55444908 (+)
zmpste24 LOC106563167 coding downstream 225878 55454754 ~ 55459560 (+)
atp5if1b LOC106563115 coding downstream 237032 55465908 ~ 55467811 (+)
rpl13a rpl13a coding downstream 240031 55468907 ~ 55472622 (+)
G1640000 NA non-coding upstream 30821 55195504 ~ 55196032 (+)
G1639998 NA non-coding upstream 32626 55193993 ~ 55194227 (+)
G1639994 NA non-coding upstream 37570 55189002 ~ 55189283 (+)
G1639954 NA non-coding upstream 51491 55174278 ~ 55175362 (+)
G1640023 NA non-coding downstream 209 55229085 ~ 55229285 (+)
G1640134 NA non-coding downstream 27043 55255919 ~ 55256149 (+)
G1640141 NA non-coding downstream 32916 55261792 ~ 55262064 (+)
G1640143 NA non-coding downstream 36943 55265819 ~ 55267791 (+)
G1640188 NA non-coding downstream 98620 55327496 ~ 55327796 (+)
G1638780 NA other upstream 986102 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1051723 54174796 ~ 54175130 (+)
G1637730 NA other upstream 1796293 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2308375 52917337 ~ 52918478 (+)
LOC110498153 LOC106561476 other downstream 698772 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1271281 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1281053 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1597076 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1906950 57135826 ~ 57143925 (+)

Expression


Co-expression Network