si:ch211-15d5.11 (LOC106563256)


Basic Information

Item Value
gene id si:ch211-15d5.11
gene name LOC106563256
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55375535 ~ 55403366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955112.1
AAAGACTCCTCAATCTCCGGCACTGGAGGATGGATGAAATGGGCGGAGCGTATATGCTCAACTTTTTGCTGTTGTCTGGTGATATCACAAAACATAACACCGGGCGTAATATGAAGCTTTCCGAAATCACTCGCTTTCGATCAACATTCCGGGCAATCTTTTTGACAGGCACGATTACAGGAGCTTAATAAGCATGAAGACTGAACGGAGGGATGCCAGCAGAGCCCCTCAACCTACCAGAATATTGCTGTTGTCAACATCACAGTAGTCGCCGATAGGTCCCTGAGAAGGCCTTCTTGCAAACCCTCGGAGCCATGGAACATAAACTACAACAGAGGGACAAAAACAGGCCCAGCTACTTTGGCAACGTCAAGACCAGACTGGGGTCCAAGCTCCCTCCTGGTGTTGCTCAGCCCCCCGGCTTCATCGCCGGCCCCTGGGAGACAGGGCCTCAGACCGGCCCAACCAAGGAGGCCAGGGACAGCGGTCAGTCCCACCGTGCCGTGGGGCGTCCCTTTGACCACGTCCGCCACATCCGGAACCCCCAACTGCGCCGGTATTACCTCCAAGAAGCTACATGGGTACCAGAGCGCGCCACAGCTAAATCCAGGGAAGAGGGTCAACCATCTGATGACAAAGCAGACTGTATGGCCCACCATGAAGACACTGTGTTCAGTGTCACCTCCCAGTACAGTAGCCTGGGAGATCAGACCAAGCTGAACAGgcatctctccacctcctcctccctcatctcccgGGAGCACCTCCGCGTTCCCAAGAGTAAAGGCTCTGGCCAAGGCTCACCTCCCGTGGCGACGCACCCTGACCCCGACCTCAGGCTGGAGCCAGAGTTGGACACTGACCCAGGGCTTTCTCCGGCCCCATCGCCCAGCCCTCACTCCCCGTCACCGGACACAGAGTATGATAAGTTACTGGATGTGGAGGCAGTGCCAATGCCTGATGGACAGATCTGCCTACTGGCCCTCCCACCTGAGTGTTCCCTGGGGGAGGGGCCAGCGGCCATGCCGTACCTCAAGCTCTTCTGCCGCTACATCACTGACCGCAAGggTGTGGTTTCTGGTATCTTGCTGGTGACGTCCAATAAGATGTTCTTTGACCCTTGTAAGACCCACCCGTTGGTGATAGAGCACGGCTGTGAGGAGTACCTGCTGTCCTGCTCAGTGGACAGCCTGGCCTCGGTCTCCTTCTACTCTGACATCTCCCATGTGCACTTCAACTCCTCCACACACAGGTGGAATGGAACTAAAAACATACAGAAAACTggctccaaaactgtcaagatGCTCGAGCAGGGTGGGAGGCGAAGCAGCAGTAGCCCTCCACACCACAAGGGGGAGACTGTCCCAGCACTGGTGTCTGCTGCTACATCAGAGCTGAGGTCTGCCCTGGCTCTGAGCCTGGTCCAGGGGTtctctgaggaggagaggagcagtgaCATGGCTGAGTGGCAGCTGGAGGGGAAGGGTAGTCCGCTGGAAGAGCTGGCTGTGCAGTCATCCAGGACTGTGGGAGGAGCTGTGTTGAGCAGTGCTGCCACCTTCTGTTGTGGTGGACAAGaggcagcagggacagggaataaaGTGAGGATGGAGCTGGTGGACAGAGAGGGTACAAAGAAGCAGCAGTCTGTGAGGAATCAGACACCAGgcCCCTCTAGACTGTCTTCAGGGACTTCTGGAGGTCTGGTGTTTGTCAGGCTGCGACTCCAGCAATCCACTGGGAAGAAGAAGGGTGTGGCTGCAGGCTTGCTGCTGGGGACAAACAAAACCTTACCCCGGAGGGACTCCTGGTTCGCCTTCTCCCAGGAGAGCTCAGATGAGCTGTATGCCTACATGAACCACTGGAGGCCTGGCCTGTGCATGCTGGAGGGAGGGTCGGAGGAGGGCGATGAGGAGGAGTTTGTACTGGTtgaagacagagaagaggaggagaaggaagaagaaCAGGAGGTGTCCAAGAACCATGGGCGGACTGGGGAGGACTGGGAGCTGGTGACAGTGGAGGATGGTAGAGGGAGACTCCCCCTGGACATGGACAAAGATCCAGAGGGACTGTGTGAGATCGTAGCCCAGAGTCGCATCTTAGACGCATCGCTTGTCAGAGAGCTCTCAGTGGAACTGCCACCCAGGACAGTGGGCCACACGTGGCAGCTGGCTTACAGCACGTCTCGTCACGGCTCCAGCCTCAAGTCCCTCTACCGGAGGCTGAAAGGCAGCGACTCGCCTATACTCATGGTCATCAAGGACTCACTTAATCAGGTGTTTGGGAgcttcctctctcaccctctgagGCCAAGCGAGACCTTCTACGGCACCGGAGAGACATTCCTCTTCATGCTGCTTCCTCGCTTCAAGTGTTTCAAGTGGACTGGAGAAAACTCCTTCTTCATAAAGGGAGACCTGGACTCTTTTGCTATCGGAGGAGGAAGtGGTCACTTTGGCTTGTGGCTGGATGAGATGCTGTACCTGGGCAGGAGTAGCCCCTGTTACACTTTCAACAACTGCTGCCTCTCGGAAAGAGACGACTTCCACGTCATGGAGCTGGAGGTGTGGACATTCTGGTGAAGACATGAACTCAACTCACCTCGCCTAGCAACACATACTGACTCTCTCTGgctgtccaatcactgcattaaACAGGACTCTAGAAACCATATATTCTAGTACAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955112.1 True 2689 mRNA 0.56 16 55375535 55403366

Neighbor

gene id symbol gene type direction distance location
LOC118941490 NA coding upstream 146659 55226853 ~ 55228876 (+)
LOC110498133 LOC106563926 coding upstream 236507 55137415 ~ 55176085 (+)
orc3 orc3 coding upstream 378961 54987738 ~ 54996574 (+)
LOC110498129 LOC106564756 coding upstream 388493 54974692 ~ 54987042 (+)
LOC110498128 LOC106610688 coding upstream 405679 54968308 ~ 54969856 (+)
rlf LOC106563209 coding downstream 25080 55428446 ~ 55444908 (+)
zmpste24 LOC106563167 coding downstream 51388 55454754 ~ 55459560 (+)
atp5if1b LOC106563115 coding downstream 62542 55465908 ~ 55467811 (+)
rpl13a rpl13a coding downstream 65541 55468907 ~ 55472622 (+)
LOC118941555 NA coding downstream 67522 55470888 ~ 55470969 (+)
G1640210 NA non-coding upstream 20631 55354567 ~ 55354904 (+)
G1640199 NA non-coding upstream 33386 55341860 ~ 55342149 (+)
G1640198 NA non-coding upstream 33877 55341398 ~ 55341658 (+)
G1640188 NA non-coding upstream 47739 55327496 ~ 55327796 (+)
G1640143 NA non-coding upstream 107744 55265819 ~ 55267791 (+)
G1640241 NA non-coding downstream 10414 55413780 ~ 55414008 (+)
G1640242 NA non-coding downstream 11110 55414476 ~ 55415744 (+)
G1640247 NA non-coding downstream 19027 55422393 ~ 55422719 (+)
G1640218 NA non-coding downstream 57072 55460438 ~ 55464025 (+)
G1640257 NA non-coding downstream 64565 55467931 ~ 55468192 (+)
G1638780 NA other upstream 1134784 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1200405 54174796 ~ 54175130 (+)
G1637730 NA other upstream 1944975 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2457057 52917337 ~ 52918478 (+)
LOC110498153 LOC106561476 other downstream 524282 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1096791 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1106563 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1422586 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1732460 57135826 ~ 57143925 (+)

Expression


Co-expression Network