rlf (LOC106563209)


Basic Information

Item Value
gene id rlf
gene name LOC106563209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55428446 ~ 55444908 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574749.2
GTCGGAAAACAACACGAAGAAGAAGTGGTGAGCGCACGCTGGTGCACGCGCGTCACATGAAGGGGATGCATACGCGCGGTGGCGGGGACTGAAGATGGCGGATAGTGATGTTGAACCAGAGCCCGACTGGAGTAATCGGCCTTCCAACACTGCCGAGGACACTCTCGTCGCCATGGAATGCTTGCTCACCACCTTGAGAGCGCTTGAAGCAACGCTCAGGCAACAAGACATTTCGGAAATATCATCCACCGAATATTGCGACAACTTCtgccagGCACTGATGGACTACGCTGGGAGCAGGAATTCTGTGGAACATGGTCTTCCTCTCCTGGAGGTATACTGCCTGGCCATCAACTGCTTTGCTGCTGCAAGGCCACATCTCACTGCAGACTCCGACACTGTTGCCCTGGTGTTGAAGAGACTAGCACTGAGCTGTTTTGAACTGTTGCTATCTGTGCCTGAAAACGAAATCCCTTATGAGGCCTGGGTTCAATTTCACCGCTCTGTTCAGGTGGCACATGATGCCTTGTTGGAGTATGGGAGCATAGATCTACAAGCCCTCCTCCAAATCACAGGGGAGGGTGGAGCGTGGAGTAACCCTGTCCTAAGCGCCCTTCTCACCGGTCATCCCACAACTGCAGAGGAAGTTGACGCGTACGTCTCCTTGGAGGGGGAGGGCTTCATGGAGATGCGGGTTAAACACCTGGAGAAAGTGGGGGAGGTGGCGAAGGCTGTGGTACTGGCTAAGGCCTGTGCTGAATGCCATCTTGTCTCCAACCAAACCACCTTCCGCCAGAcctatgtctctctcctctgccaacTGCTGCCGGGCGAGGAGGCCATCATGGAGATATCCAGACTGGACTGTAAGGATGTGCTGGATATTACATGCAATTTGGAGACTGAGGGGGAGGATAACACAGCCTTCATCCTGTGTACTACCTTCTTAACTCAACAGCTGCAGCAGCAGAGCCTGTACTGCTCCTGGGAGCTCACACTGTTGTGGAGTAAGCTGCAGAGAAGGATCGACCCATCTTTGGAGTCACTGCTGGAGCGTTGCCTGCAGCTAGGTGCCATTGCTAAGACTGTCTACCATCTGCTCTTCCTTGTGCGTGTCATCCGGACAGAGGCAGAGGAGCTGGGTCTGGCTTCATCTGTGGAGTTATGTGTTAAAGCACTACAGCTCCCAAAGCAAGAGGACACAGAAACGAGGATATCTGTGTGCAAAACTGTATCCTGCCTCCTACCAGACGATCTTGAGGTGTTGCGGGCCTGCCAGCTGACAGAGTTTCTCTTAGGCCTCTCTCATGTGGCCTTCAGTACCCTTCAAGAGCTCTATCTGCGGCCCGATCAGAAGTATGACCAGGAAAATGCCATTATCCCCAACTCGCTGCGGTGTGAACTGCTCCTGGCACTTAAAGCCCACTGGCCTTTCGACCCTGAATTCTGGGACTGGAAGACACTCAAGCATCAGTGCATCATGCTGCTGGGGCTTGAACCTGAGccggaggaggaagaagagaaagggagggggcaGGAGGAGGTTAGTCTTGAGCAGGATGTAAAGGAGGCGGTGGAGAAGGGATTTGTTGATATGCCAAAAGAATATGTAAATGGGACAAGTGGAAGCATTGATGGTCAGGAGAAAGATGAAGAAAATGACCGGGACAGTAAACCACCTTCAAAGCCAGATTCTGAGGGTACCTCAGAGCAGGGTTCACTGCAGAAGAAATACAAGTTCTTCTGCAAGATTTGTAAGAAATCTGTTACTGAGACTCGAATCCTTCTTCACTCTAAGAGGCATGAAGAAAACGGTGTTTCCACCTGCCCTGTCTGCCTGAAGAAGTTTAAGAGCAGAAAGGATTTTATCCCACACACCAAACTACACCTTCAGATGCCATCCAGAAGCACTCGTCAGAAGAAAAAGGACAAAAAGAGGGTTGATTTGGATAAGGAAATGGAGGAGGATGACTTGGATGACTTGGAGCCTGGTGAGATTGCCCTTGACCCATCCTTAATGCTGTACTACCAGTCCACACATGATCCTGATGTTCTGGAGCACATTCTAGAACAAGCTTCATCTGCACCCAGGAAGCCTGGTCATGAGGATAACATCACAATTGAATACATTAATGTTCATTTTGAATTGCAGAATCGTGACATATACACATGCCCTGCTACTCACTGTACAAAGACTTTTAAGCATTCCAAGTACCTGGGTGTTCACCTTAAATCAGAAGACCATGTTAGCGATGAGAACGTGAAACATTATTGTGAAATGAGAGACCGTAGGGAAAAGTGCACTTACTGTCGGCGCCACTTCATGTCTGCCTATCACCACCGCAGGCATCGGCGTGTGCACTACGGTGACCTGCCTTACATGTGTATGGTCACAGATTGTGGTGCTCGTTTCAGCACCTCCAATGAGCTTGTAACACATAAGCAGAGCCATGGCTTTCAACTTAGCTACCAGTGTGAGCTCAAAGGTTGTACTCTTTCTTTCTGTGACTTGGGGCAGGTATACCACCATGAAGCACAGCACTTTCGTGATGCAGCATATAGCTGCACTAGCCTTGATTGCAAGAAGTTCTACTTTTCTAAAAAGGAATTTGGCCGGCATTTAGCCACACACGGCATTACCTTCTCTGAGGAAGACTTTGAGGCACAGAGGAAGGCCAAAAGAAAACATCTTGACTCCATAACAGAGGATATAGCCAGCCCCAAAAAGTCGTGTGACATAAAGACTGTACTGGAGGAGGTAGTCAACGGGGAAAACAATGCTACTTTCTCTACAAGCAGTGCCTCCTCCTCACAGAGTTGCAAGGagcccaagggcacaatggcATCTGTTGCTGTGTGCTTTGATGGAAAAAAGTTCACTTGTGGTTTTGAAAGGTGTGGATTAACCTTCTCCAAAGCTAAAGATGTCCACCAACACCTAAGGTGTGTTCATCCCGATCATTTCAAGTCTGAGAATAAGGAACGCAAAAATCTTGTCAAAGAGAAGGGTTTGAAATCGAAAGGTCTAAAGATAAAAACAGAGAAGAACAACGATGACGAGAACAAACATGAACTTGCAACTTGTCTGCTAATGAAGGGGTCAAGCCAGGAAAATGCTTGTCCTATTAAGAACACAGCAACATCTCCCTCAAGCCTGGACAATGACCCTTTGAGAGAGATTTTGATTGGGCTTAGCCAGCTTAGTCTGACTCTCTCCAGCTCTACAAATGGATTTTGTGAGCCCTTCCATCCAATCTCAGGATCCACATCAAAAATATCCTGCCATCAGGGTCTTGGTACCAGGTCCCCAGTTGTGTTTTTGCAAAAGAGAGCGCAACCCGCTGTTGGCAAGAGGGTGAAACTGACATCAAACACGGAACCATCAGTAGCCCACAGTCTACCCACAGAGCAACACTTAGATGCAGACCAGGTCAGCCCCTTTGTTTTGCAAGCCTCTACTAAACCATACTTTTGTGAGCTTAATGATTGCAACTTTAGAAGTGTGACCAGCACAACCCTAATGCGCCACTACATGAACAAGCATAATTTCTCAGAAAAGAAGGCGAAAGGAATGAAGATCCTTAAATCACTGACATTTAAGCCATTTAAGTGTCACCTCTGCTTCAAATGCCATAGAGAGAAGACGGACTTGAGGGTTCATTATCTTCAGACACATAGACTTAGCGAGGCAGTTGTGGAGCAAATGAGCTGTTGGTCTAAAAAGCGGGTTGAGGGTAAACCCCCAGAACCCACCAAGCCAACAGTCTCCATAACACAACCCCCAGAACCCACCAAGCCAACCGTCTCCATAAAACAACCCCCAGAACCCACCAAGCCAACAGTCTCCTTTACACAGCCCCCAGATGACACCGAGCAAACATCCTTCTTTACACAAAAATCTCAGACCCCCACCTGGCAACACCCCTCCTGGCAGCAGAAGTACCAAAAAAAGAAAATAATGCGAcaaaatattgtacaatttgCTAAATCTGGAGACAAGCGTAAGAAATGCAGTCATGCTCCATCTGTGCAGGATCACTTCGAAGAGGAGGAAAGTGAAGACAGAGGTATGCGAAGAGGCAAAGGTGGCATTTATATGTGCAAGCACAAGGACTGTGGGGTTATTTTCTCCCACGCCTCCAGTCTTTATCGCCACCAGAAGAAGTTTCATCCGCAGGTGATGGGACATCCTTCCGTGCTTTCAGAAGACCCAGCTTTACAGAAGTTTAGGTGCAGCTACGCCAACTGTAATGCATCTTACCTCCTGAACAGTAGCTTGGTGCGACACACAGAGAGTGAGCATCCTAACCAGGCGACCAGTAGCTTGAAGCGTCACAGAAAAAGTGATCATCCTAACCAGGCGACCAGTAGTCTAAAACGTCACAGAAAAAGTGATCATCCTTACCAGGCGACCTTGTGCTGCAAGTATGACGGCTGTACAAAAGTGTTCACCCAAAGCAGTAGTCTGGAAAAACATGTACTCTCTAGCCACCTCAATTATTATGATTCACTCGTATTACGTCTCCAGAATACTCACAAGGACACGTCAGCCACTGGATGCCAAAAGAAGCTGATCATCACATCTACGCCACAGAAAGATGAAACCAAGCTACCCCTCAGGCAATCTCTAAGACACTGCCCAAAGTCTCCTGAAGATGTTAAGGCTGAAGAAACTAGTGAAGAGCAAGATGAAGATGACGTTGAAAATTTGTCAACTGAGAAGAAATCCAGAAGGTTTGAAGATATGGTATTCCGTTCCCATGAGGAGGCCTTGCAGATGTGCCAAGATCGTTGTCAACGTGAAGCCTTCCCGTGCATGGTGCAAGGTTGTGATTCTGTAGTCAAATTGATACGTAGTATGCGCCGTCACTATCTGAATTGCCACAAATTAACCAATCATGCTTTTGAATTGAATGAGGATAAGCTTGTGTTTAGTGCAGAGAAACTGGACGAGCTGATTCAGAGGAATACTGTATTATCTGCTTGCCCTGATATGACGAGGGCACCTAACGGAGTTCTGAAGATGGAGTATCAAGCAGAGCCAGATAACCCTGGTGGTCCATCTGTCCCTATGAGTCTGCACTCCATCGAAGCAGACACACTTGATGAGCATGACCCACTGGGGTTCAAAGAGGAGCCACCTGCTGAGAGGAATGTTTTGGTGGGTGCCGATGACTTGCTTTATGGAGAACCTAGTGGGCACACTGAAGAGCCTGTTACTCAAAACAGCCAAGAGGAGAGGCCAAGGCGAAAATCCTCAAACCCGCCCGCTCTTGATCTCTCTCCACCATCCTCCCTCCGATTCAGTGTTGATGAGGGCTTCATGGACAGTTCAGACAAAGATGGTGTCAAACCAACAATTTCTGTGCCATTGCCCTCCCCTCAAGCCCGCCAGCCACTTAAACGTAAGAACGAGCTCTCTGAGCTCCTTCCCATTCCAAAGGACTCCCAGCCTCACAGCCCCCCCCTTCGCACATTTGACCTGGCTGCTTATAAACCTATGGGATTCGAGTCATCTTTCCTGAAGTTCATACAGGAGAGCACTAAGGATGATGTGAGGCCCCGGGCTTCTCACTGCAACAGCCACAGGCCTGAACCACCTGTGGTGTCTGCTCGGCGGCGGGATTCCTACAGACGGAACTGTTCTGTAAAGGAGAACAGCCAGATGGGCCTCTCTACTACCCGTAGCAGGCGGGCTCGATCTTCCCCACTTCAGCCTCTTCCCAGGACAGGGGAATACACATCAGTCCAGAACTTGCGCCTCATCTTGGACAAGGCTCTGACGGGTTGTGGTGACCTAGCCATTAAGCAGCTGCAGTACCTCAGGCCCGTGGTAGTTCTTGAGAGGCCAAGGTTTTCCACCTCCTTGCTTGACCTCTTCCCCACAAAAACTAATGATAAGCTACTTCTCGACTGTTCGTAGAACTGAGTACCTTTGTCTCCAATATAAAGACTATCCCAGTGTTTTTTTTCTAATGTAATTACTACTCTGTTATCAGTATCTTTTTTTAAGTTGCCAAACTGATTAGCTCAAGTACCTTAATTGACATACAACAGATACGTGTGTAAAATGATCCTTCCCCTGATTTTTTAAAACTTCTTTAGAGTATTTGTATTACATTTTTGTCAGGTGATGAACGTtctaatgtgtatatatatatatgcgtcTTCTCACTACGAAATGAAGTTTTataaaacattttcaaatattattTAGAACGATGTAGCTCATTGTACCATTTCAATGCTATTAATTTGTCTGAAAAAAAAAGCTTTCATGGGACAGGAACATCTCATTTGCCCACTAATAACTTGAGGAAAAATGTTGTCCCCTCTGAATATTAAGACCCCTTTCTTTTTTTCAATGCAGTGGGCAGATGTGTAATGCTTTATCAGAATAATAAATGTTTGAATAGGCCCTTTCAAAAATATGAAA

Function

NR:

description
zinc finger protein Rlf

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574749.2 True 6436 mRNA 0.47 8 55428446 55444908

Neighbor

gene id symbol gene type direction distance location
si:ch211-15d5.11 LOC106563256 coding upstream 25080 55375535 ~ 55403366 (+)
LOC118941490 NA coding upstream 199570 55226853 ~ 55228876 (+)
LOC110498133 LOC106563926 coding upstream 289418 55137415 ~ 55176085 (+)
orc3 orc3 coding upstream 431872 54987738 ~ 54996574 (+)
LOC110498129 LOC106564756 coding upstream 441404 54974692 ~ 54987042 (+)
zmpste24 LOC106563167 coding downstream 9846 55454754 ~ 55459560 (+)
atp5if1b LOC106563115 coding downstream 21000 55465908 ~ 55467811 (+)
rpl13a rpl13a coding downstream 23999 55468907 ~ 55472622 (+)
LOC118941555 NA coding downstream 25980 55470888 ~ 55470969 (+)
LOC118941561 NA coding downstream 26443 55471351 ~ 55471422 (+)
G1640247 NA non-coding upstream 5727 55422393 ~ 55422719 (+)
G1640242 NA non-coding upstream 12702 55414476 ~ 55415744 (+)
G1640241 NA non-coding upstream 14438 55413780 ~ 55414008 (+)
G1640210 NA non-coding upstream 73542 55354567 ~ 55354904 (+)
G1640199 NA non-coding upstream 86297 55341860 ~ 55342149 (+)
G1640218 NA non-coding downstream 15530 55460438 ~ 55464025 (+)
G1640257 NA non-coding downstream 23023 55467931 ~ 55468192 (+)
G1640255 NA non-coding downstream 51248 55496156 ~ 55498648 (+)
G1640411 NA non-coding downstream 72738 55517646 ~ 55518062 (+)
G1640691 NA non-coding downstream 275928 55720836 ~ 55721162 (+)
LOC110498128 LOC106610688 other upstream 458836 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1187695 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1253316 54174796 ~ 54175130 (+)
G1637730 NA other upstream 1997886 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2509968 52917337 ~ 52918478 (+)
LOC110498153 LOC106561476 other downstream 482740 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1055249 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1065021 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1381044 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1690918 57135826 ~ 57143925 (+)

Expression


Co-expression Network