zmpste24 (LOC106563167)


Basic Information

Item Value
gene id zmpste24
gene name LOC106563167
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55454754 ~ 55459560 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574751.2
AGACTGGTTCAGTTTCACTGGGAACAAAATTAACTGCTGCACTGACATTTAGCATGGCAACCGCCGTTGAACGTTATCGAAGAAGAACATTTAGTATGAATGGAAACTGGATGCGAATGAGCTTGCTATCATTTTGAGTGGACTGGTGAATGCTAGTCAATTTAATCTGGGGATATAAACCATACTAAGTTATTTAAATATAAACAGTTGTATCTTCTGAATAAAGCCTGGAAGGCGTGTGAACGGGCGGCTGTTCAACCAGTGAGTCCAACTAGCAACACATGCTAGCTTGCTAACTTTAAAAAGAGACCAAGGCCAGAATAAAGATGGAAACAATACTTAACCTACCAATCGAAAATAAGATATTTTATGCTGTTCTGGTGTTCTCATGGACGGTGTATCTATGGGAGGCCTACCTTGCCTACAGACAGCGGAGAATATACAGGTTGACCATGCACGTACCACAAGAGTTGGGAAAGATCATGGACACAGATACCTTTGAGAAGTCACGCCTTTATCAACTGGACAAGAGCAACTTCAGTTTCTGGTCTGGACTGTATTCAGAAACTGAGGGGACGCTGATCCTGCTGTTTGGTGGAATCCCTTTCGTTTGGAAAGTTGCTGGGACAGTGACTGCTCGTTTTGGATTGGGTCCAGAGTATGAGATCTTCCAGTCTCTTTCGTTTCTGATACTAGCAACCCTGTTCAGTGCATTCACTGGCCTTCCCTGGAGTATCTACAACACCTTTGTTATTGAGGAGAAGCATGGCTTCAACCAGCAGACGCTGGGGTTCTTCCTAAAGGATGCTGTAAAGAAGTTTATTGTGACCCAGTGTATCTTGTTGCCTGTGACCTCACTGCTCCTCTACATCATCAAGATTGGTGGAGACTTCTTCTTCATCTACGCCTGGCTCTTCACACTGGCTGTCTCGCTTGTTCTGGTGACCATCTATGCGGACTACATTGCGCCCCTATTTGACAAGTTCACCCCTTTGCCAGAGGGTGAGCTGAAGGAAGAGATTGAAAGCATGTCGAAGTCTATCAGTTTCCCTCTCACTAAGGTCTATGTTGTAGAAGGTTCCAAGCGTTCCTCTCACAGTAACGCTTACTTCTATGGGTTCTTCAAGAACAAGCGCATAGTGTTGTTCGACACCCTGCTGGAGGACTACTCTCCCCTCAACAAGGACGGCGAGCCAGAGACTGACACACTAACCGAGGACAAATCCAAGCTCAAGaacaAGAAGCAAGGCTGCAACAATCCAGAGGTCTTGGCGGTGTTGGGCCACGAGCTTGGCCATTGGAAGTTGGGCCACACTGTGAAAAACATAGTAATCAGTCAGATGAACTCCTTCCTGTGCTTCTTCCTCTTTGCTGTGCTAATTGGACAGAAGGAGCTGTTCATGGCCTTTGGTTTCTATAACAGCCAGCCCACTTTGATTGGGTTGATGATCATATTCCAGTTCATCTTCTCCCCATACAATGAGGTCCTGTCCTTCTGTCTGACTGTCCTGAGCCGCAGGTTTGAGTTCCAGGCGGACTCCTTTGCACGGGGCATGGGTCGAGCCTCGGAGCTCTGCTCTGCACTCATCAAGCTCAACAAAGACAACCTGGGCTTCCCTGTGGCTGACTGGCTCTTTTCCATGTGGCACTactcccaccctcccctcctgGAGCGCCTACGGGCCCTGGGAAGCACCAAGCAGGACTGATGAGTCCCAAAAGGAGAGCCACGCCAGCTGCCTCTCCCAAAGGGTCTCCACATGCCTCTTCTGGCACTCTAATGTAGTCTCCCCTATTTTCCTCTCTGTTTCCCTATTTTTGTTCTCCTTTATCCCTGCCATTATGTTCCTTTTTTGGTAA

Function

NR:

description
CAAX prenyl protease 1 homolog

GO:

id name namespace
GO:0071586 CAAX-box protein processing biological_process
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K06013 STE24; STE24 endopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574751.2 True 1860 mRNA 0.48 10 55454754 55459560

Neighbor

gene id symbol gene type direction distance location
rlf LOC106563209 coding upstream 9846 55428446 ~ 55444908 (+)
si:ch211-15d5.11 LOC106563256 coding upstream 51388 55375535 ~ 55403366 (+)
LOC118941490 NA coding upstream 225878 55226853 ~ 55228876 (+)
LOC110498133 LOC106563926 coding upstream 315726 55137415 ~ 55176085 (+)
orc3 orc3 coding upstream 458180 54987738 ~ 54996574 (+)
atp5if1b LOC106563115 coding downstream 6348 55465908 ~ 55467811 (+)
rpl13a rpl13a coding downstream 9347 55468907 ~ 55472622 (+)
LOC118941555 NA coding downstream 11328 55470888 ~ 55470969 (+)
LOC118941561 NA coding downstream 11791 55471351 ~ 55471422 (+)
LOC118941554 NA coding downstream 12601 55472161 ~ 55472242 (+)
G1640247 NA non-coding upstream 32035 55422393 ~ 55422719 (+)
G1640242 NA non-coding upstream 39010 55414476 ~ 55415744 (+)
G1640241 NA non-coding upstream 40746 55413780 ~ 55414008 (+)
G1640210 NA non-coding upstream 99850 55354567 ~ 55354904 (+)
G1640199 NA non-coding upstream 112605 55341860 ~ 55342149 (+)
G1640218 NA non-coding downstream 878 55460438 ~ 55464025 (+)
G1640257 NA non-coding downstream 8371 55467931 ~ 55468192 (+)
G1640255 NA non-coding downstream 36596 55496156 ~ 55498648 (+)
G1640411 NA non-coding downstream 58086 55517646 ~ 55518062 (+)
G1640691 NA non-coding downstream 261276 55720836 ~ 55721162 (+)
LOC110498128 LOC106610688 other upstream 485144 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1214003 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1279624 54174796 ~ 54175130 (+)
G1637730 NA other upstream 2024194 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2536276 52917337 ~ 52918478 (+)
LOC110498153 LOC106561476 other downstream 468088 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1040597 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1050369 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1366392 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1676266 57135826 ~ 57143925 (+)

Expression


Co-expression Network