Gene
RNA
| Item | Value |
|---|---|
| gene id | rpl13a |
| gene name | rpl13a |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 55468907 ~ 55472622 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| rpl13a | Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in negative regulation of translation. Predicted to act upstream of or within translation. Predicted to be part of cytosolic large ribosomal subunit. Predicted to be active in ribosome. Is expressed in several structures, including blastomere; heart; liver; musculature system; and pleuroperitoneal region. Orthologous to human RPL13A (ribosomal protein L13a). |
| description |
|---|
| 60S ribosomal protein L13a |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0015934 | large ribosomal subunit | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02872 | RP-L13Ae, RPL13A; large subunit ribosomal protein L13Ae |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021574753.2 | True | 732 | mRNA | 0.51 | 7 | 55468907 | 55472622 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| atp5if1b | LOC106563115 | coding | upstream | 1096 | 55465908 ~ 55467811 (+) |
| zmpste24 | LOC106563167 | coding | upstream | 9347 | 55454754 ~ 55459560 (+) |
| rlf | LOC106563209 | coding | upstream | 23999 | 55428446 ~ 55444908 (+) |
| si:ch211-15d5.11 | LOC106563256 | coding | upstream | 65541 | 55375535 ~ 55403366 (+) |
| LOC118941490 | NA | coding | upstream | 240031 | 55226853 ~ 55228876 (+) |
| LOC110498147 | LOC106562977 | coding | downstream | 461 | 55473083 ~ 55482568 (+) |
| htr1d | LOC106562880 | coding | downstream | 206446 | 55679068 ~ 55706728 (+) |
| kdm1a | LOC106562352 | coding | downstream | 287205 | 55759827 ~ 55785721 (+) |
| LOC110498388 | LOC106561476 | coding | downstream | 379494 | 55852116 ~ 55882702 (+) |
| LOC110498153 | LOC106561476 | coding | downstream | 454981 | 55927603 ~ 55932079 (+) |
| G1640257 | NA | non-coding | upstream | 715 | 55467931 ~ 55468192 (+) |
| G1640218 | NA | non-coding | upstream | 4882 | 55460438 ~ 55464025 (+) |
| G1640247 | NA | non-coding | upstream | 46188 | 55422393 ~ 55422719 (+) |
| G1640242 | NA | non-coding | upstream | 53163 | 55414476 ~ 55415744 (+) |
| G1640241 | NA | non-coding | upstream | 54899 | 55413780 ~ 55414008 (+) |
| G1640255 | NA | non-coding | downstream | 23534 | 55496156 ~ 55498648 (+) |
| G1640411 | NA | non-coding | downstream | 45024 | 55517646 ~ 55518062 (+) |
| G1640691 | NA | non-coding | downstream | 248214 | 55720836 ~ 55721162 (+) |
| G1640697 | NA | non-coding | downstream | 255903 | 55728525 ~ 55728767 (+) |
| G1640730 | NA | non-coding | downstream | 316299 | 55788921 ~ 55794386 (+) |
| LOC110498128 | LOC106610688 | other | upstream | 499297 | 54968308 ~ 54969856 (+) |
| G1638780 | NA | other | upstream | 1228156 | 54240256 ~ 54240751 (+) |
| G1638710 | NA | other | upstream | 1293777 | 54174796 ~ 54175130 (+) |
| G1637730 | NA | other | upstream | 2038347 | 53430004 ~ 53430560 (+) |
| G1637178 | NA | other | upstream | 2550429 | 52917337 ~ 52918478 (+) |
| G1641405 | NA | other | downstream | 1027535 | 56500157 ~ 56505897 (+) |
| G1641407 | NA | other | downstream | 1037307 | 56509929 ~ 56511097 (+) |
| G1641713 | LOC106560842 | other | downstream | 1353330 | 56825952 ~ 56830309 (+) |
| G1641935 | NA | other | downstream | 1663204 | 57135826 ~ 57143925 (+) |
