LOC110498147 (LOC106562977)


Basic Information

Item Value
gene id LOC110498147
gene name LOC106562977
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55473083 ~ 55482568 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574755.2
GGTTGACCGCGAGAAAGGGGCGTGAACGAGCGCCAGAGCGGTCATTCTCCGATGTGCAAACCCAAATAAACAAGAATCACATTTCTCGGGACACTTTTGTTCACATTTGGCATTTCGTGACaattgtaactttttttttttttaaatactgggATTTGTGGAGCGGAGAATGGCAGCTGAAGTGAATGGCAGTTCTGCTCCAGTTAAGGAGGAAGACGAACCAATGGACAtaactgtaacacacacagagaactacCAGACACTCATAGACGCAGGCCTTCCACAGAAAGTGGCGGAGAGCCTGGATAAGATATTTCAGACTGGACTGGTGGCTTACGCTGACCTGGACGAGAGAGCCATCGACGCCCTGAGGGAGTTCAATGAGGAGGGAGCCCTGTCAGTGTTACAGCAGTTCAGGGAGAGTGACCTGTCACATGTGCAGAACAAAAGTGCATTTCTCTGTGGTGTGATGAAGACATACCGACAGCGAGAAAAGCAAGGAAGTAAAGTTCAAGAATCCACAAAGGGTCCTGATGAGACTAAGATAAAGGCTCTTCTGGAAAGAACAGGTTACACTTTGGACGTCACCACAGGACAGAGGAAGTATGGGGGGCCTCCACCTGACGAGGTGTACTCAGGGGCCCAGCCTGGAATCGGAACAGAGGTATTTGTTGGCAAGATCCCCAGAGACTTGTATGAGGATGAGCTGGTGCCTCTGTTTGAGAAAGCCGGGCCCATTTGGGACCTGCGTCTAATGATGGACCCCCTCCTTTCGGGTCAGAACAGAGGATATGCCTTCATCACCTTCTGCAATAAAGATGCTGCCCTAGAGGCCGTCAAGCTTtgtGATAATTATGAAATCCGGTCGggcaaatacctgggtgtctgcaTCTCTGTCGCAAACAATCGGCTGTTTGTTGGGTCAATTCCAAAGAACAAGACAAGAGAAAGCATATTGGAAGATTTCAGCAAAGTCACAGAGGGCCTCGTGGAGGTGATACTCTACCACCAGCCAGATGATAAAAAGAAGAACCGTGGCTTCTGCTTCTTAGAATACGAGGACCACAAAACTGCGGCCCAGGCCCGTCGCCGCCTCATGAGTGGCAAGGTGAAGGTGTGGGGGAACCCTGTTACTGTTGAGTGGGCAGATCCAGTAGACGAACCGGACCCAGAGATTATGGCAAAGGTAAAGGTGCTGTTTGTGAGGAACCTGGCCACACCGGTGACAGAGGAGCTCCTAGAGAAAACGTTCTCCCAGTTTGGGAAGTTGGAGCGGGTCAAGAAGCTGAAAGACTATGCCTTTGTGCACTTTGAGGACAGAGATGCTGCCGTGAAGGCAATGCAACAAATGAATGGCAAAGAATTGGAAGGCGAGGAGATAGAGATTGTTCTGGCAAAGCCTCCGGACAGGAAGAGGAAAGAGCGGCAGGCCCAGAGACAGCCAACTAGGACCACAGGATATGATGATTACTACTATTATCCTGCTCCACGCATGCCGCCTCCCATGCGAGGCAGGGGCCGAGGTGGGAGAGGTGGCTATGCCTACCCTCCAGACTACTACGGTTACGAGGACTACTACGATGATTACTACGGGGGTGGTTACGACTACCATGACTACCGAGGTGGCTACGACGACCCTTACTACGGGGGATACGATGATGTCTACGTGCCGAGAGGAAGGGGGGGCAGGGTGAGTCGAggtgccccccctccccctagaGGCCGAGGAGCACCACCCCCTCGTGGCAGAGGTGGCTACGTCCAAAGGGGGGCTCCTATGGGTGTACCGAGGGGAAGCCGTGGGAGCCGGGGAGGTCCGCCCCAGCAGAGGGGCCGCGGCATCAGAGGGGCCAGGGGAAACCGCGGGGACAACTTGGGCGGGAAGAGGAAGGCTGACGGTTACAACCAACCGGACTCCAAGCGCCGGCAGACCAACAACCAGAACTGGGGCTCCCAACCCATTGCCCAGCAACCCCTGCAACAAGGTGGCGACTACTCTGGTAACTATGGTTACAATAATGACAACCAGGAGTTTTACCAAGATTCTTATGGGCACCAATGGAAGTAGACAAAACATGAACGGATTGGGCTTTGACAGCAACCTTTGATTGGCTGTGTGTATATATCACCCTTCACATTCAAAAGAAAtagaaacaaaataaaaaatgaatcaaAATGCATAAATAACATTAGAAATATGGATTTGTTGCACTACAGTACCAATATGGAGCAAAATATGAATGTACATACATAAGCTTGCTTAATAATTTGTGCTAATCCTTTTTTGCTTTGCTTGTGGCTACTTGGGACATTTTTTaccattattttattatttttttaaatttaagatTTTTTTGTTTAGCTTTTTTAAGCTGGCATTTACAGGAAAAATTGGACGATCATAaaaaaagagaagagaaaaaTTCTTTGAGAAAGCATTTGCAATCATGAGAATCGTTCAGTGACTGGCCAGCAACCCATTCCCAGACCCCTCTCCCCATTGGACATTTTCCCTCCCAGATTTCTGATAGGTAGGCATAGGACTTTGCTTGTACATAAAGGCTTTAAACTGAAAGCTTTATTTTCAGTTTTGTTGCAGAGGTGGGGGAAAAAGGAGAGGAAAATTGCACTTTTTCATGTACCGGAATAGTTACGTAAAAGTTGTATGTTAAGCATTCGTAGAAGTAGACAAACTGTGTTTTTCTAAACGTATTACTACAGCTCTCTCAAATTTGCCCTTTTAGATAATGGGTCTGGCAAAACCTTAATCGCCAAGACAATTTGCTCTTTGATGTGTTTGTATTTATAAAAATGTTCTTGTTACATTTCAATAAAACTCAACCATACTTCATTCAATTATCAGCAATTTCAAA

Function

NR:

description
heterogeneous nuclear ribonucleoprotein R isoform X2

GO: NA

KEGG:

id description
K13161 HNRNPR; heterogeneous nuclear ribonucleoprotein R

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574755.2 True 2873 mRNA 0.48 11 55473083 55482568

Neighbor

gene id symbol gene type direction distance location
rpl13a rpl13a coding upstream 461 55468907 ~ 55472622 (+)
LOC118941554 NA coding upstream 841 55472161 ~ 55472242 (+)
LOC118941561 NA coding upstream 1661 55471351 ~ 55471422 (+)
LOC118941555 NA coding upstream 2114 55470888 ~ 55470969 (+)
atp5if1b LOC106563115 coding upstream 5272 55465908 ~ 55467811 (+)
htr1d LOC106562880 coding downstream 196500 55679068 ~ 55706728 (+)
kdm1a LOC106562352 coding downstream 277259 55759827 ~ 55785721 (+)
LOC110498388 LOC106561476 coding downstream 369548 55852116 ~ 55882702 (+)
LOC110498153 LOC106561476 coding downstream 445035 55927603 ~ 55932079 (+)
LOC118941493 LOC106561950 coding downstream 631601 56114169 ~ 56432709 (+)
G1640257 NA non-coding upstream 4891 55467931 ~ 55468192 (+)
G1640218 NA non-coding upstream 9058 55460438 ~ 55464025 (+)
G1640247 NA non-coding upstream 50364 55422393 ~ 55422719 (+)
G1640242 NA non-coding upstream 57339 55414476 ~ 55415744 (+)
G1640241 NA non-coding upstream 59075 55413780 ~ 55414008 (+)
G1640255 NA non-coding downstream 13588 55496156 ~ 55498648 (+)
G1640411 NA non-coding downstream 35078 55517646 ~ 55518062 (+)
G1640691 NA non-coding downstream 238268 55720836 ~ 55721162 (+)
G1640697 NA non-coding downstream 245957 55728525 ~ 55728767 (+)
G1640730 NA non-coding downstream 306353 55788921 ~ 55794386 (+)
LOC110498128 LOC106610688 other upstream 503473 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1232332 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1297953 54174796 ~ 54175130 (+)
G1637730 NA other upstream 2042523 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2554605 52917337 ~ 52918478 (+)
G1641405 NA other downstream 1017589 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1027361 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1343384 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1653258 57135826 ~ 57143925 (+)

Expression


Co-expression Network