htr1d (LOC106562880)


Basic Information

Item Value
gene id htr1d
gene name LOC106562880
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55679068 ~ 55706728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574758.2
GTGAACGCACACGCACAGATTATGCAGAGTATGTTATGGACGCATTTCATCTTTGATGCATCATTTTCTTCAAGGCTGCATGGATACACTTTATCATGAAACTCGTTGAGGTTTTACTAATTTACGCGAGAGCAATGAATCAATCCACAGCGCATCAGCACAGGGGTTGGTAATCCCTCTTCCGAATGGGAGCGTCGACAACTCATGCTGTAGACTCTGTGGCATGTACTGGAGCTCGTATTGGTAATTAAACAGTACGGGACGAAGAGACTGGTGCTATATTTCTCAATTTGGAAAGTGTAGCTTCAGTCGGTTTGTTTGGGGAGTTATTCAAGCCGAGAAGTGTTTTTATTGGAAAGTATTCGTATACTACTTTTTCTGAGGTTTGAAGGGGAAAGATATCGAAATATCTGTCAATGGGTTTCAGTTCGAAAAAGAGGATGCTTCGCTATACATGAACTACAAACATTGGGACCACTCTAAAGTCTTGTGAAACGCAGTATGGACACCTTTGGAAACACCACAACATTTAGATGCCTGCTGTTATCTTTCAGCGCAACAAAATCTTTCAATTTTCGAATTGGACGTGCGTAATGGACATTTCGCGTGTAACTTTGTAGGGATCTGGAGACTCATTTGTTAGATTACCATTCACTGCTCATATGAGGGCGAAAATAGGAAATTATCCTTGTGGCAAAATTGAAAACCATGGTTGTCATGCTGTAATAGAAGCCTGGAATAAGCTGTGCAGTACTATTCCCCTCTGGACCTCAAACCTGAATGCTTAACTGACCAACAAAGCTTTGACAGGAAAAAAGTTAACACACACTGGAAATCAATACAACACATGCTGTGCTTCGTCTCACTGGGAGTCTGCAAACGCCTTGGCCTTTATCTCATTGAGTTGCGAATTTCTAAGGCAGAGACAAAAACATATGGCATGAAGAAGGGATATTGACTTGTTGTCCATGACTGGACCGGTTGAAAAGGACTCCCCACCTGATGTGGATCATGTTAACATTCTAGCTCACTCTCAACATCAACATGGCTGGACCGCCCAGGCTTTGACTCTGAAACCAAATGAAATAACCCCTGGTTCAGCTTTAAGCTAGAACAGAGCGAGCCATCCCTGTGTATTACTATCATCTCTGAGTGTGGACTCACTGAGGGTTATTGAAGAGGATGAGACCATGAAAGCAGCAGTTGATAGGGAGCCGTGGTCTGGGGTGTTGTGCTCGGCCTGGCTGGAGTGGAGATAAGAGCTTGGGCGAGCGAGAAAGCAGAGGTTTGATGAGACCAGAGCAGAATACAAATCAGCGTCTGCCGTCCCTCCGCCGGACTTCAGCGTCAAACCAATATTAGTGTGTCTACTGAATTAATAATGCCAACAGTTGTGCATTGAAAGGTACGAGTATAACCAAAATCTATAATATAAAACTAAATAGCAGTCATCACTTTTGAGACGATCAAAACGGAGATAAACAAATAACCCAGTGTGTCTTCAAGACTGAAATAAGGGATAAAGGATCCATCGCGTCCCATGGATACGTGTGACAACCAAAAGTGACATCCATCGATGCAGCCCTCTTTACCATGCGGAGAAGACAACGTGAAGCGTAGGCTCTGATCGATTGAGGTGATGTGCCTCATCTAGACCTGGAACAAAGGGTTACAGGGGAACGGCGAGATGGATCAGGATAATAGCTCCATTGATTCAATCTTCACCAATGCCACAGAGAGACCCAAAACTTCAGAGGCACACTGGGACGAGGCCATTCTCCTAGGTCTGCAGATCTCCCTGTCGGCCATCCTGGCCATCATCACCCTGGCCACCGTATTGTCCAACGCCTTTGTTATTGCCACCATCTTCCTGACCCGGAAGCTGCACACGCCAGCCAATTTTCTGATCGGTTCGCTAGCCGTGACAGATCTACTGGTGTCCATCCTGGTCATGCCTATCAGCATCGTGTACACGGTGAGTAAGACCTGGTCCCTGGGGCAGATCGTCTGCGACATCTGGCTGTCATCAGATATCACCTTTTGCACCGCCTCCATCCTGCACCTGTGTGTCATTGCGCTGGACCGCTACTGGGCCATCACTGATGCCCTGGAGTACTCCAAGCGCCGGACGATGCGTCGAGCGGGCCTGATGATAGCGGTGGTGTGGGtgatctccatctctatctctatacCGCCACTCTTCTGGAGGCAGGCCAAGGCCAATGAGGAAGTGATGGAGTGCCTGGTAAACACAGACCAGATCTCCTACACGCTCTACTCCACCTTTGGGGCCTTCTACGTGCCCACCGTGCTGCTGATCATCCTCTATGGCCGGATCTACGTGGCCGCCCGCTCGCGCATCTTCAAGACTCCAGTGTCGTCCGGCAAGCGTTTCACCACGGCCCATCTCATCCAGACGTCAGCCGgctcctccctctgctccatCAACTCTTCCGCCTCCAATCAGGAAAGCCACCTGCAACCTGGAGGGGGAACCagcggaggtggaggaggaggcagaggtggGTCGCCTCTCTTCAATAGCGTGAAGGTGAAGCTGGCAGACAGCGTGCTGGAGAGGAAGCGTCTGTGCGCCGCCCGGGAGAAGAAGGCCACCAAGACGCTGGGCATCATCCTGGGAGCCTTCATCGTGTGCTGGCTGCCTTTCTTTGTGGGTACCCTGGTACTGGCCATCTGCAAAGAATGCTGGTTCCACCCAGTGCTCTTCGACGTGTTCACCTGGCTTGGCTACCTGAACTCGCTCATCAATCCCGTCATCTACACCGCCTTCAATGACGAGTTCAAACTGGCCTTCCACAAACTCATCAAGTTCAAGAGATGCTACTGAGGGAATGCGAGGATTGAACATTCAAAATTTAAATCCATAACCTATTCTCTTGCCTTACTTAGTAAATACCGGTATGATAATATAGGGCCTATTCATAGAAACACTGTACTGTTGCATTAGTTCATGTTGTAAACACACATGCTCATTGTGTTTGGTCTCTGTACATTTTTCTGTACATTGGAACTTCATTGACTGGCTTGTGAGGTGCCACAGCTCTTTCAGATATTTCCTTCATACAGATGTATGCATGCATTTCTAAAAGAAGAGAGAGTAAAACATATTCAGACTACAAAACTAATTATAAATGAGAGTTTGGGTTTGTATATTACAGACCCCAAAAGAACAGACTTATCATACATTGAGACAAATGAATGAGACTACGCAGTATGAGACTGGGATCTCCTTTGGATGGTAGACATGAGGGGATTGATCCATGGATTATAACTGAGAAGCGGATTATAAACCCCCATCGTACTGGAAAAGCCATAGCATGTTGTCACAGAAATGTCACATTACAGAGGCTCATCGTCCATAACACGTCTGTGgtacagtacaatagagacaTATATAAAGATTAAGTCTTACGCTCTTTATGTGTATGCGTTTGTTTCTGTGTGGAGGAGTTGTCAC

Function

NR:

description
5-hydroxytryptamine receptor 1D-like

GO:

id name namespace
GO:0007210 serotonin receptor signaling pathway biological_process
GO:0006939 smooth muscle contraction biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0040012 regulation of locomotion biological_process
GO:0042310 vasoconstriction biological_process
GO:0050795 regulation of behavior biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574758.2 True 3478 mRNA 0.47 2 55679068 55706728

Neighbor

gene id symbol gene type direction distance location
LOC110498147 LOC106562977 coding upstream 196500 55473083 ~ 55482568 (+)
rpl13a rpl13a coding upstream 206446 55468907 ~ 55472622 (+)
LOC118941554 NA coding upstream 206826 55472161 ~ 55472242 (+)
LOC118941561 NA coding upstream 207646 55471351 ~ 55471422 (+)
LOC118941555 NA coding upstream 208099 55470888 ~ 55470969 (+)
kdm1a LOC106562352 coding downstream 53099 55759827 ~ 55785721 (+)
LOC110498388 LOC106561476 coding downstream 145388 55852116 ~ 55882702 (+)
LOC110498153 LOC106561476 coding downstream 220875 55927603 ~ 55932079 (+)
LOC118941493 LOC106561950 coding downstream 407441 56114169 ~ 56432709 (+)
LOC118941492 LOC106612417 coding downstream 543885 56250613 ~ 56254784 (+)
G1640411 NA non-coding upstream 161006 55517646 ~ 55518062 (+)
G1640255 NA non-coding upstream 180420 55496156 ~ 55498648 (+)
G1640257 NA non-coding upstream 210876 55467931 ~ 55468192 (+)
G1640218 NA non-coding upstream 215043 55460438 ~ 55464025 (+)
G1640247 NA non-coding upstream 256349 55422393 ~ 55422719 (+)
G1640691 NA non-coding downstream 14108 55720836 ~ 55721162 (+)
G1640697 NA non-coding downstream 21797 55728525 ~ 55728767 (+)
G1640730 NA non-coding downstream 82193 55788921 ~ 55794386 (+)
G1640755 NA non-coding downstream 119279 55826007 ~ 55826803 (+)
G1640789 LOC106562077 non-coding downstream 176152 55882880 ~ 55885747 (+)
LOC110498128 LOC106610688 other upstream 709458 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1438317 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1503938 54174796 ~ 54175130 (+)
G1637730 NA other upstream 2248508 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2760590 52917337 ~ 52918478 (+)
G1641405 NA other downstream 793429 56500157 ~ 56505897 (+)
G1641407 NA other downstream 803201 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1119224 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1429098 57135826 ~ 57143925 (+)

Expression


Co-expression Network