LOC110498388 (LOC106561476)


Basic Information

Item Value
gene id LOC110498388
gene name LOC106561476
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55852116 ~ 55882702 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110498388
ATGAACCCCTGGAACTGGACTGGAGAGGACCCTATGAACCCCTGGAACTGGGccggagagatgagggaggactCATGTGAGAACAGCGGGCCGGAGAGGAGGGAGGACTCATGTGAGAACAGCGGGCCGGAGAGGAGGGAGAACTCATGTGAGAACAGCGGGCCGGAGAGGAGGGAGGACTCATGTGAGAACAGCGGGCCGGAGAGGAGGGAGAACTCATTATTCTCACAGAGGGAGTTCCTTGCTTTAGCAGAACCAACAGTGGAGTCGACCATGGGGATGCAAGAGGACTTAGCAGTGACCAGGACAGTGAACTTATCGACAGTCGGTAAAATAACCTTTCTGGACTCAGACTTCCGTTACACACTCTTCCCAGTGTTTTACGGTGTTGTGTTCGTACTTGGTCTGATAGCCAACAGTTAGTTACGTGCTGTTCGTGATGCAGCGCATGCAAGACACCAAGGCCATGAATGAGATCCGCATCTACATGGCCAACCTGACTGTTGCCGACCTCCTCTTCGTGTGCGCCCTCCCCTTCTGGATTGGCTACTACCACCACCGCGGTGACTGGCGCTACAGCGACTTCCTGTGCCGCGTCACCGGTGTGTTCTTCTTCATCAACACCTACTGCTCCATCCTCTTCCTCGCCGCCATCAGCGTCAACCGTTACTGGGCCATCACGCGCCCGCTGGATGCCACCTCGTCTGACCATTGGCGCCGCGGGGTGGCCATCACGGCGGTCATCTGGGCGCTCACTCTGTCCATGTCCATGCCGCACTTCTTTGAAACTGGCATCCAGGTGGACGACGGCAACGTATCACGCTGCTTTGAGAGCTACCACGACAAGACTGACGACCAGAAGCGGACTGTGGCCACCACTCATCATCGTGGAGTGCCTCGTCTTGGTCTTCTTCCTCGTAGTAGTCTGTAACCTGCTCATTGCCCGGGCCCTGCTCGCCCCAGTCCCCTACCCAGCATCGGGGCTCCAGTTCATACATACCCCGGGGGGTGAAGGACCAGGCCCTGCAGATGCTGTGAGCCGTGGTGGGGGTGTTCGTGGTGTGCTTCCTCCCCCACCCTGTGGTCCAGGGCCCCTGGACTCTGGCTGTACTGGAGATCAAGGAGGGCTGGGGCAGAATGGACTGGGGCCAGCGAACCAGGCAGTGGCTTAACGACGCCCACCAGGTCACCTTGATGCTGATGGGGCTCAACTGCCTCCTGGACCCTGTGGTGTACTGCTTCGCCACCAGGAGGTTCTGCCTGTACATCAAGGACAATCTGAAAAAGATGGGGAGGGGCAAAGGATGCTCGGAAACAGCCATCACACACATTTCTATGGTGGAGTGCAAGAATGTGAGCCAGCGGCTCCATAGTGAACAGCAGCAGCTGAAGGTTTAAATCTCTAGATTACATGATATTGTAGATATTGTGTCTAATGCTAATGCTGTTGTTAGTAACCACATCCTCAGGATGCTTCATTCCATCACACCCACACCTAACAATGAACACATAGTGCAGAACATGCACTCTGCTATGTAGCCTCATGTTCATTCAGACACATCACATGAACAGAtgcaccaccacacagccccacCCAGAGTATGGTTCCCCTCTAGATTTCCTTCCTGTAGGGATTTGTCCTGGCCACTGTGCCAGCTATAATCAGTGCTTTAAAGAATCTTTGGACCATTGATTCTTTGTTTTCACATTTCAGATGTACTGTACATTGTATCTCACAATGTATCTCACACTTTGATATTGTGACTTCAATTTAATCACGTTTCTTCCTGTTCTTCTAGTGTAATCAGAGAAGAGAAGCAGACATTTTATAGGGAACAGGAGCTTCTATAAAGGATTGCAAAATAGCTCTACAAACTCAGTCCCAAGCCACTAGACTAGATCCTTAGATAACATGGAtatcaaattacattttaaatatcacatgcgccgaacacaaccGAACACAACAATAGTCCTATCACTGTTGGAGCCTTCTAAATTGGGTGCTGAACAATAGCTCTATAAACTCAGTCCCAAGCCACTAGACTAGATGGTTAGATAAAATGTATAGTCAGATTGTCCTATCACTGTTTGAGCCTTCTAAATTGGGTGCTGAACAATAgcaattcataaaaaaaaaatccttgttCTTGAGCACCTAATATGGACATATATTCACACATAAAAATGAGGTTTTCAGGATGCTGGATGTCTGTCAAGTTCATGCATGTTGTGATAAACTAAGCTTTGTAATTGTGAAACTGTAATTGTGAAACTAAGAATTGCATTGATTTTAGCCTTACATGGTCTTCACCACTTATGGAATTGCAAAATGTTCATGTGTGGTGAGATGTGAAACTGTATTTGTTTTGCAATTTAATTTTGTAACAAAGCAAAGACACATACTGGGAGCTTTTTTTAAGTATGTGAAGCATCGCTATCCccctgggcacagatgtcagttcaacgtctagtatTGAttaacatttggttgagttgtcaactaacgttgaaattacgtggaaacaacattgattcaaccagtttttgcccagtgggattaTTGTTATTGTAAAGAATAATCTTCACAATCCTTTTATGAGGCTGCCAGCTACTGAAGTAT

Function

NR:

description
platelet-activating factor receptor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110498388 True 2623 mRNA 0.48 2 55852116 55882702

Neighbor

gene id symbol gene type direction distance location
kdm1a LOC106562352 coding upstream 66395 55759827 ~ 55785721 (+)
htr1d LOC106562880 coding upstream 145388 55679068 ~ 55706728 (+)
LOC110498147 LOC106562977 coding upstream 369548 55473083 ~ 55482568 (+)
LOC118941554 NA coding upstream 379874 55472161 ~ 55472242 (+)
LOC118941561 NA coding upstream 380694 55471351 ~ 55471422 (+)
LOC110498153 LOC106561476 coding downstream 44901 55927603 ~ 55932079 (+)
LOC118941493 LOC106561950 coding downstream 231467 56114169 ~ 56432709 (+)
LOC118941492 LOC106612417 coding downstream 367911 56250613 ~ 56254784 (+)
LOC110498155 LOC106561796 coding downstream 561821 56444523 ~ 56584678 (+)
LOC118941494 NA coding downstream 651368 56534070 ~ 56538629 (+)
G1640755 NA non-coding upstream 25313 55826007 ~ 55826803 (+)
G1640730 NA non-coding upstream 57730 55788921 ~ 55794386 (+)
G1640697 NA non-coding upstream 123349 55728525 ~ 55728767 (+)
G1640691 NA non-coding upstream 130954 55720836 ~ 55721162 (+)
G1640411 NA non-coding upstream 334054 55517646 ~ 55518062 (+)
G1640789 LOC106562077 non-coding downstream 178 55882880 ~ 55885747 (+)
G1640786 NA non-coding downstream 50033 55932735 ~ 55934404 (+)
G1640832 NA non-coding downstream 85128 55967830 ~ 55968118 (+)
G1640841 NA non-coding downstream 107968 55990670 ~ 55992248 (+)
G1640835 NA non-coding downstream 123836 56006538 ~ 56006852 (+)
LOC110498128 LOC106610688 other upstream 882506 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1611365 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1676986 54174796 ~ 54175130 (+)
G1637730 NA other upstream 2421556 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2933638 52917337 ~ 52918478 (+)
G1641405 NA other downstream 617455 56500157 ~ 56505897 (+)
G1641407 NA other downstream 627227 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 943250 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1253124 57135826 ~ 57143925 (+)

Expression


Co-expression Network