LOC110498153 (LOC106561476)


Basic Information

Item Value
gene id LOC110498153
gene name LOC106561476
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55927603 ~ 55932079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574766.2
AGTACACCTAGCCGGAGTTGTCAGACTCACGCATCAGTTCTTCATGGTCGATTCATTTCAGGAGTTCATATTGTTTCTGGAAACGTTATTGTAGTATGTATATTCGCGCACATGTATTAGGCTATAGAGATGTTTACGATGTAGCCTAACATACGCTGGTTTCAAGATAACCTAATAGCGTTTatctagaacacacacagaaatacagaaCGAAACGAGGAAGGAGCCACGCGCTCTGAGGGAGTTCCTTGCTTTAGCAGAACCAACAGTGGAGTCGACCATGGAGATGGAAGAGGACATGACAGTGAACACGACAGTGAACATATCGACAGTCGGTAAAATAACCTTTCTGGACTCTGAGTTCCGTTACACCCTCTTCCCAGTGTTTTACGGTGTTGTGTTCGTCCTTGGTCTGATAGCCAACAGTTACGTGCTGTTCGTGCTGCAGCGCCTGCGCAACGCCAAGGCCATGAGCGAGATCCGCATCTACATGGCCAACCTGACTGTTGCCGACCTCCTCTTCGTGTGCGCCCTCCCCTTCTGGATTGGCTACTACCACCACCGCGGTGACTGGCGCTACGGCGACTTCCTGTGCCGCGTCACCGGCGCGTTCTTCTTCATCAACACCTACTGCTCCATCCTCTTCCTCGCCGCCATCAGCGTCAACCGTTACTGGGCCATCACGTGCCCGCTGGATGCCGCCTCGTCTGACCATTGGCGCCGCGGAGTGGCTGTCACCATGGTAATCTGGGTGCTCACTCTGTCCATGTCCGTGCCGTACCTCTTGGAGACGGGCATCCAGGTGGACGACGGCAACGTGTCGCGCTGCTTTGAGGGCTACCACGACAAGACTGACGACGAGAAGCGGACTGTGGCCACCACCCACCTCATCATTGTGGGGTGCTTCATCTTGGTCTTCTTCCTCGTAGTAATCTGTAACCTGCTCATCGCCCGTGCCCTGCTCACCCAGTCCCCTACCCAGCATCGGGGCTCCAGTTCATCCCAGCTCCGGGGGGTGAAGGGCCAGGCCCTGCATATGCTGTGTGCCGTGGTGGGGGTGTTCGTTGTGTGCTTCCTCCCACACCACGTGGTCCAGGGCCCCTGGACTCTGGCTGTACTGGAGATCAAGGAGGGCTGGGGCAGAATGGACTGGGGCCAGCGAACCAGGCAGTGGCTTAACGACGCCCACCAGGTCACCTTGATGCTGATGGGGCTCAACTGCCTCCTGGACCCTGTGGTGTACTGCTTCGCCACCAGGAAGTTCCGCCTGTACATCAAGGACAATCTGAAAAAGATGGGGAGGGGCAAAGGATGCTCGGAAACAGCCATCACACACATTTCTATGGTGGAGTGCAAGAATGTGAGCCAGCGGCTCCATAGTGAACAGCAGCAGCTGAAGGTTTAAATCTCTAGATGACATGATATTGTAGATATTGTGTCTAATGCTAATGCTGTTGTTAGTAACCACATCCTCAGGATGCTTCATTCCATCACACCCACACCTAACAATGAACACATAGTGCAGAACATGCACTCTGCTATGTAGCCTCATGTTCATTCAGACACATCACATGAACAGAtgcaccaccacacagccccacCCAGAGTATGGTTCCCCTCTAGATTTCCTTCCTGTAGGGATTTGTCCTGGCCACTGTGCCAGCTATAATCAGTGCTTTAAAGAATCTTTGGACCATTGATTCTTTGTTTTCACATTTCAGATGTACTGTACATTGTATCTCACAATGTATCTCACACTTTGATATTGTGACTTCAATTTAATCACGTTTCTTCCTGTTCTTCTAGTGTAATCAGAGAAGAGAAGCAGACGTTTTATAGGGAACAGGAGCTTCTATAAAGGATTGCAAAATAGCTCTACAAACTCAGTCCCAAGCCACTAGACTAGATCCTTAAATAAAATGGAtatcaaattacattttaaatatcacatgtgctgaatgcaacaggtgtaggtagaccttacagtgaattgcttacttacaagcccttaaccaacaatagtCCTACCACTGTTGGAGCCTTCTAAATTGGGTGCTGAACAATAGCTGGTCGTGAGCAAGGAATAATAAAAATCCTTGTTCTTGAGCACCTAATATGGACACATATTAATAACAATGAGCTTTTTAGGATGCTGGCTCTCCGTAAAGTTCATGCATTTTGTGAAAAGCTAACCTTTGTAATGAAATGAAACTGTAATTGCCAAATGAGCTATGCAGGATTGCGTTGATTTTAGCCTACAGATTATTTTAGCCTACTCTCACATGTGGTACGATGTGAAATTGTATACGTTTTGCAATTTTTGTAAGATTGCAAATGAAATACTGTGAGGCAAGAAGTACTTTCGGTCACACTTTTATTTGGACAGTCTGGATAACCCATCTAGAGATTCTGTACATACTATGAataaactatctgttgataagaaATTGCTTGCTAAGGTTACGCTTATGGTTAGAATAAGTGTTAgcttaagggttaaggttaggataagggttatgtttaagattagggttaa
>TU1876918
GGTCGATTCATTTCAGGAGTTCATATTGTTTCTGGAAACGTTATTGTAGTATGTATATTCGCGCACATGTATTAGGCTATAGAGATGTTTACGATGTAGCCTAACATACGCTGGTTTCAAGATAACCTAATAGCGTTTatctagaacacacacagaaatacagaaCGAAACGAGGAAGGAGCCACGCGCTCTGAGGGAGTTCCTTGCTTTAGCAGAACCAACAGTGGAGTCGACCATGGAGATGGAAGAGGACATGACAGTGAACACGACAGTGAACATATCGACAGTCGGTAAAATAACCTTTCTGGACTCTGAGTTCCGTTACACCCTCTTCCCAGTGTTTTACGGTGTTGTGTTCGTCCTTGGTCTGATAGCCAACAGTTACGTGCTGTTCGTGCTGCAGCGCCTGCGCAACGCCAAGGCCATGAGCGAGATCCGCATCTACATGGCCAACCTGACTGTTGCCGACCTCCTCTTCGTGTGCGCCCTCCCCTTCTGGATTGGCTACTACCACCACCGCGGTGACTGGCGCTACGGCGACTTCCTGTGCCGCGTCACCGGCGCGTTCTTCTTCATCAACACCTACTGCTCCATCCTCTTCCTCGCCGCCATCAGCGTCAACCGTTACTGGGCCATCACGTGCCCGCTGGATGCCGCCTCGTCTGACCATTGGCGCCGCGGAGTGGCTGTCACCATGGTAATCTGGG

Function

NR:

description
PREDICTED: platelet-activating factor receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574766.2 False 2536 mRNA 0.47 2 55927603 55932079
TU1876918 True 707 TUCP 0.52 2 55927648 55930295

Neighbor

gene id symbol gene type direction distance location
LOC110498388 LOC106561476 coding upstream 44901 55852116 ~ 55882702 (+)
kdm1a LOC106562352 coding upstream 141882 55759827 ~ 55785721 (+)
htr1d LOC106562880 coding upstream 220875 55679068 ~ 55706728 (+)
LOC110498147 LOC106562977 coding upstream 445035 55473083 ~ 55482568 (+)
LOC118941554 NA coding upstream 455361 55472161 ~ 55472242 (+)
LOC118941493 LOC106561950 coding downstream 182090 56114169 ~ 56432709 (+)
LOC118941492 LOC106612417 coding downstream 318534 56250613 ~ 56254784 (+)
LOC110498155 LOC106561796 coding downstream 512444 56444523 ~ 56584678 (+)
LOC118941494 NA coding downstream 601991 56534070 ~ 56538629 (+)
LOC110498162 LOC106560907 coding downstream 918826 56850905 ~ 56862683 (+)
G1640789 LOC106562077 non-coding upstream 41856 55882880 ~ 55885747 (+)
G1640755 NA non-coding upstream 100800 55826007 ~ 55826803 (+)
G1640730 NA non-coding upstream 133217 55788921 ~ 55794386 (+)
G1640697 NA non-coding upstream 198836 55728525 ~ 55728767 (+)
G1640691 NA non-coding upstream 206441 55720836 ~ 55721162 (+)
G1640786 NA non-coding downstream 656 55932735 ~ 55934404 (+)
G1640832 NA non-coding downstream 35751 55967830 ~ 55968118 (+)
G1640841 NA non-coding downstream 58591 55990670 ~ 55992248 (+)
G1640835 NA non-coding downstream 74459 56006538 ~ 56006852 (+)
G1640860 NA non-coding downstream 96023 56028102 ~ 56028323 (+)
LOC110498128 LOC106610688 other upstream 957993 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1686852 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1752473 54174796 ~ 54175130 (+)
G1637730 NA other upstream 2497043 53430004 ~ 53430560 (+)
G1637178 NA other upstream 3009125 52917337 ~ 52918478 (+)
G1641405 NA other downstream 568078 56500157 ~ 56505897 (+)
G1641407 NA other downstream 577850 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 893873 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1203747 57135826 ~ 57143925 (+)
G1642062 NA other downstream 1342974 57275053 ~ 57276777 (+)
rpl13a rpl13a coding upstream 455026 55468907 ~ 55472622 (+)

Expression


Co-expression Network