LOC118941493 (LOC106561950)


Basic Information

Item Value
gene id LOC118941493
gene name LOC106561950
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 56114169 ~ 56432709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118941493
tctaggttggGACCGCTGGCAGTGGGGGCCTTCCAGGAGAGGCCAAGCCCACTGCGTTCTGCAAGTTCTACGAGCGAGGAGACTTCCCCATCGCTCTGGAGCATAACACCAAGGGAAACCAAATCGCATGGAAGGTGCAGATGGAGAAACTTGACTACCACCATTACCTGTCTCTGTTCTTCGACGGGCTGTGTGAGACGGTGCACCCCTACGACTTCTTCACCCGCCTGGAGGTCCACGACATACTGGAGCACGGGGGCACCAAGATCCTGCCAGTCATCCCCCAACTCATCATCTCAATCAAGACCAGCCTCTTGCTGCGACAAGAACACACGGTCTGCACCATGTTGAAGATGCTGCAGCACCTGGTGGCGTCTGGAGAGGCCCTGGTACCTTACTACAGACAGATCCAACCTATCCTCATCATCTTCAAGAACATGAACATCAACTCGGGGGACGGCCTTGACTACAGCCAGCAGAAGAGGGAGAACATCAGAGAGCTGATCTAGGAGACCCTGGAGGTGTTTGAGCACTATGTGGGCGAGGACGCTTTCATCAACATTAAATACTTGGTGCCAACCTACGAGTCCTGCATGCTCAACTGAATGGATGGACACAGTTGCAACCAGCCAACATCATTAACTCACTCTCAACCTTTCAACCACCCAACATCATTAAATCACCCTTCAACTCTCAACCACCCAACATCATTAACTCTCCCTCAACCCTTCAACCACCCAACATCATTAACTCACCCTCAACCACCCAACATCGTTAACTCACcctcaaccacccaacatcaTTAACTTCACCCTGAACCCTTCAACCACCCAACATCATTAACTCACcctcaaccacccaacatcaTTAACTCACCCTCAAACCTTCAACCACCCAACATCATTAACTCACCCTCAACCACCCAACATCGTTAACTCACcctcaaccacccaacatcaTTAACTTCACCCTGAACCCTTCAACCACCCAACATCATTAACTCACcctcaaccacccaacatcaTTTACTCACCCTCAACCACTCAACATCATTAACTCACcctcaaccacccaacatcaTTAACTCaccctcaaccacccaacaccgTTAACTCACCCTCAACCACCCAACATCGTTAACTCACCCTCAACCACCCCACCTTGATGcagccctctctacactacctatGTGACCCATTATATTCCTGACTGCAAGTCATTATTATTACCTGTCTGTGTCGATTAGAACATCTACAACTTCCTTTGGTCTACTAGCTCTAGCTAATACTTTTAATTATGTTCCTGTGAATGAGAGTCCCTCCATGTTTATTTGACCCCGTGGCCACTCAAAAACAGCTTTATATACCGTATCAACTGTTGAAAACAGTCATTATGCAGCTGAATCCTACGAGATAATTGTCCACTTAAAATGAGTTTTGACCAAATGATGACCGTACTGTATATCCTTGTATGTCCTATCCACTGCATTTGTTGTtcttctcctctaatcagggactgatttaaaaCTGACTCACCAAGTGGGTGCAaataattatcaggtagaacaaaaacacatcagtacTCCGGACCTCATAGGGTAATGTATAAATATCCCTGCCAAATATCATAGCAACAGGTA
>TU1877389
gtgtgtgtgtgtttcagctctGGAAGAGAAACTCTCAACTCTACACTGGGTGAATGACAAGAACACACGGTCTGCACCATGTTGAAGATGCTGCAGCACCTGGTGGCGTCTGGAGAGGCCCTGGTACCTTACTACAGACAGATCCAACCTATCCTCATCATCTTCAAGAACATGAACACAAGCCACAACAGAGCCCAGTGTCTGCAGCTGGAGCCTGGACAGAGCGACGGTGGGTGGAATGGGG

Function

NR:

description
PREDICTED: parkin coregulated gene protein isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118941493 False 1639 mRNA 0.53 5 56114169 56432709
TU1877389 True 244 lncRNA 0.53 3 56281081 56314320

Neighbor

gene id symbol gene type direction distance location
LOC110498153 LOC106561476 coding upstream 182090 55927603 ~ 55932079 (+)
LOC110498388 LOC106561476 coding upstream 231467 55852116 ~ 55882702 (+)
kdm1a LOC106562352 coding upstream 328448 55759827 ~ 55785721 (+)
htr1d LOC106562880 coding upstream 407441 55679068 ~ 55706728 (+)
LOC110498147 LOC106562977 coding upstream 631601 55473083 ~ 55482568 (+)
LOC110498155 LOC106561796 coding downstream 11814 56444523 ~ 56584678 (+)
LOC118941494 NA coding downstream 101361 56534070 ~ 56538629 (+)
LOC110498162 LOC106560907 coding downstream 418196 56850905 ~ 56862683 (+)
LOC110498163 LOC106610662 coding downstream 625825 57058534 ~ 57062178 (+)
LOC110498164 LOC106609486 coding downstream 642818 57075527 ~ 57080042 (+)
G1640864 NA non-coding upstream 71928 56041887 ~ 56042241 (+)
G1640860 NA non-coding upstream 85846 56028102 ~ 56028323 (+)
G1640835 NA non-coding upstream 107317 56006538 ~ 56006852 (+)
G1640841 NA non-coding upstream 121921 55990670 ~ 55992248 (+)
G1640832 NA non-coding upstream 146051 55967830 ~ 55968118 (+)
G1641407 NA non-coding downstream 77220 56509929 ~ 56511097 (+)
G1641412 NA non-coding downstream 91510 56524219 ~ 56526253 (+)
G1641415 NA non-coding downstream 109465 56542174 ~ 56542556 (+)
G1641423 NA non-coding downstream 161709 56594418 ~ 56600443 (+)
G1641422 NA non-coding downstream 162634 56595343 ~ 56611541 (+)
LOC110498128 LOC106610688 other upstream 1144559 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1873418 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1939039 54174796 ~ 54175130 (+)
G1637730 NA other upstream 2683609 53430004 ~ 53430560 (+)
G1641405 NA other downstream 67448 56500157 ~ 56505897 (+)
G1641713 LOC106560842 other downstream 393243 56825952 ~ 56830309 (+)
G1641935 NA other downstream 703117 57135826 ~ 57143925 (+)
G1642062 NA other downstream 842344 57275053 ~ 57276777 (+)
LOC118941492 LOC106612417 coding upstream 26297 56250613 ~ 56254784 (+)
G1641228 NA non-coding upstream 4579 56276141 ~ 56276502 (+)
G1641221 NA non-coding upstream 10784 56270045 ~ 56270297 (+)
G1640968 NA non-coding upstream 16121 56264759 ~ 56264960 (+)
G1640952 NA non-coding upstream 53675 56227153 ~ 56227406 (+)
G1640942 NA non-coding upstream 66395 56214210 ~ 56214686 (+)

Expression


Co-expression Network