LOC118941492 (LOC106612417)


Basic Information

Item Value
gene id LOC118941492
gene name LOC106612417
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 56250613 ~ 56254784 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955122.1
tctTGCTCCTATGTGGGACGTCAGCGTCCCACATAGGCTAACTTCCGGTGAAATAGCATAGCACAAAGATACTAAATGCACAAATCGTAATGTTAAACTttcttgtaaatacatgtatctaacatcatttaaaagcttaatttCCTCTTAATCCAACcaccatgtcagatttttaaaatgcttttcagcgaaagcaatcTTACGATAATCTGACGACAGCGCGccacacacacaagtattacAAGCATTTTCCATCCAAACATTAGCGTCACAAAAAGCCAGAAATAGCACTAAAATAATcaattacctttgaagatcttcttcttttGGCAATACAAAAGGTCCAATCTTCACAATAAATGGTTGCTTTGTTCGATTAAATCATGTTTCCATGCATAAAACGACACATTTTGTAAAAGGCTTGTGTCCTGAATTCCGTATCCTTCGACGTTCAACCAGACATGGGATGCAATCAGTCACACAGCATTGACGTTatctagtcatggttggtttctGTGAAATCCTTTGTTTGTTAGTAACACAACGACACCTTGTTAGGTGCGTATTGACCGAAAGGAGGTGATTTGAACCCAGCAAACAATGACCTGATTACGCGCCAATGATCTCACCTGTGCATCTTTGAATGACTGTATTTCTGCCCAATCACCACTGATCCTCTTGAAATCTTGCTTGGTAGATAGCCAATGGGCTTAGGTAAATGGAAATAGCAATTGTTTGTATCAGGGAAGACCAGCTCTTGACCGAAACTCGAGCGTAACGCAGCCATTCGCCATTGGAATTTCTACCAGAAGGAGCCATTTTCTTTGCGCAACGCAGTATTTAGTCAAGATAATTTTCCGCTCTTTTATTGAAGTAATTATGGCGAGTAAAGCTGTAAAAGCAAAGGCAAAGTCCAAGTATACGGATCTCCAAGAGATTATTTGCGAGATTGAACGAGAAAGTGACACAGAAATCCCAGATGATCTATCAGATTGTGCGTCAAGTGTGGACAGCAACTTTGAGTACATGTTTCTGCGTGGTGAGGATGCCATTCTCGATTGTCCCAGTCCCTCTGATTCTGATTGGGAGCCCCCACTGAAAGGAGCTGGACCATCTAGCCGGACCCCTGCTGTCTCCGGCTCCACACCTACCCCTGCCCTGCAAGGTGTGAAGTCTGTGACAAAGAAGCGGAGGTGGGGAAGGGCTAAACCTGcaatcagagaggaggagggtcgTTGGCACTCTGTGCTGGAGGAGGATGTGTTGCCTACACCTCCAGTATTCAGACCGAAGAGGCCAACAGGACCTCAGCTGGACATGACCTCTAAGTACAGCCCCATTCAACTTTTTCAGCTGTTTTTCACCTCGGCAGTTGTTGATTCCTTGGTGTCGAACACAAACAAGTATGGTGCTAAGAAGCAGGCAGGcaagaaagagggatggaagcCCATTGCCATTTCAGATTTTTTTGGGTTCATGTCCATGGTCATTTACATGGGTATTGTGAAGCTAAAAACCCTGAAAGACTACTGGAAAACTGCTTCCCTCTATCAACTGCCTTTCCCATCCACGGTCATATCATGCAAAAGGTTTCTGACAATCTCAGGGGCGCTTCATAtcagtgacccagaagttgaTGAGGACAACGAGAAGAAGAGAGGCACAGCTAGGTTTGATAGGCTGTGCAAAATAAAACCTCTCTACCCCAGCATTGTTGAGGCTTGCAAAACCTATTTTCAGCCTGCCCAGAACCTTTCcatagatgagaggatggtagctTCAAAAGCCCGAATTGGCCTAAAACAGTACATGCGCAACAAACCAACTAAATGGGGTTACAAActgtttgttttggctgattcGGTGTGTGCATACACatgcaatttttttatttatgagGGGAAGAACAGTTTTGCGACCGGTAATGGACTTAGTTATGACTCTGTTATGCAGTTATTAGATTTTCAACTGCTGGGGAAGGGCTACAAACTTTTTGTGGACAACTTTtacacaagccctaccctgtttACAGAGCTGAGGAAGCGGGATGtgtgggcttgtggcaccattcggCCCAATAGAGTGGGCTTTCCAAAAACCAAGGTGAATGACATGCCTAAGCGGGCTGAGCGGGGTACCATGAGATGGATCCGTGAAGATGGCCTGCTCTTTGTGAAGTGGATGGACACCAGAGAGGTGGTCATGTGCTCCAGtatccacaagtccttcagtggaGATCACGTCGTCAGGCGTGTGAAGGACGCTGCTGGGGCATGGACCACCAAGAATGTCCCCATTCCTGGAGCAATCAAGGACTACAACAAAAGCATGGGAGGTGTAGACCTCTCGGATGCGCTTATTGGATACTACAACGTTCTCCACAAGACAATGAAGTGGTACAAGACATTTTTTTATCATTTCgttgacattgctgtggtgaacgccttcatcctccagaaggaaatggcTCAGAGCTGTGGACatccccccatctcacagctagccttcagggagctgctcatccatgagcttgctagctacagcaagTCCACTGTAGCACCTTCTGTCCCCTCTACGTCTGGCCCCTCTGCTCCAACCAGTAgtgttcacctgcccagattcatCTCTGCAGGCATGAATGTGCCTCAGGGCAAAAAGGGCACAATAGGGAGACGTCGTTGTGTCCTCtgtcacaggaaatgccccatcacctgcaccagcTGTTCAGTAACCCtgtgctttacagcagaaagagactgctattggGCATGGCATCAGAAgaacaatattgtgtagaggactgagggtcttcacaaTATTGTACATTGTACATTGTACATTGAATGTGTGTAAATAGTTTACCCTTGTTATTTGAAAATGtttcaaatgttcattttttgGGTTTTTTTTGTGGGGTGGTATGTTAGAATGGCATTTGAGTGTTTTGTATATAGTAATTTACTTCAATGTATCACTGTGCCAAAtaggccacttgggtacatttgggcaccttgtgtgggacacctgggtgactacatgctcaatgtcatgtagctcactcatTCCTGAAGATATCTTTCTAAAACTTTTTTCAAATACTGTTGCCATCTTATGTTCTCCATTTCTACCacccccagcatcctatctgtatgtgTGGATGTTCTTGTTCAGTTGAAAGATGATGCAGcaacaataaaaacagaaaacGAATGTtaatttccttgtattttcttctaccagatctatggtgttctattctcctacattcaattcacatttacacaaaattcagagtgtttcctt

Function

NR:

description
piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955122.1 True 3303 mRNA 0.44 2 56250613 56254784

Neighbor

gene id symbol gene type direction distance location
LOC110498153 LOC106561476 coding upstream 318534 55927603 ~ 55932079 (+)
LOC110498388 LOC106561476 coding upstream 367911 55852116 ~ 55882702 (+)
kdm1a LOC106562352 coding upstream 464892 55759827 ~ 55785721 (+)
htr1d LOC106562880 coding upstream 543885 55679068 ~ 55706728 (+)
LOC110498147 LOC106562977 coding upstream 768045 55473083 ~ 55482568 (+)
LOC110498155 LOC106561796 coding downstream 189739 56444523 ~ 56584678 (+)
LOC118941494 NA coding downstream 279286 56534070 ~ 56538629 (+)
LOC110498162 LOC106560907 coding downstream 596121 56850905 ~ 56862683 (+)
LOC110498163 LOC106610662 coding downstream 803750 57058534 ~ 57062178 (+)
LOC110498164 LOC106609486 coding downstream 820743 57075527 ~ 57080042 (+)
G1640952 NA non-coding upstream 23207 56227153 ~ 56227406 (+)
G1640942 NA non-coding upstream 35927 56214210 ~ 56214686 (+)
G1640940 NA non-coding upstream 38999 56208706 ~ 56211614 (+)
G1640929 NA non-coding upstream 61250 56173493 ~ 56189363 (+)
G1640923 NA non-coding upstream 105115 56145276 ~ 56145498 (+)
G1640968 NA non-coding downstream 9975 56264759 ~ 56264960 (+)
G1641221 NA non-coding downstream 15261 56270045 ~ 56270297 (+)
G1641228 NA non-coding downstream 21357 56276141 ~ 56276502 (+)
LOC118941493 LOC106561950 non-coding downstream 26297 56114169 ~ 56432709 (+)
G1641407 NA non-coding downstream 255145 56509929 ~ 56511097 (+)
LOC110498128 LOC106610688 other upstream 1281003 54968308 ~ 54969856 (+)
G1638780 NA other upstream 2009862 54240256 ~ 54240751 (+)
G1638710 NA other upstream 2075483 54174796 ~ 54175130 (+)
G1637730 NA other upstream 2820053 53430004 ~ 53430560 (+)
G1641405 NA other downstream 245373 56500157 ~ 56505897 (+)
G1641713 LOC106560842 other downstream 571168 56825952 ~ 56830309 (+)
G1641935 NA other downstream 881042 57135826 ~ 57143925 (+)
G1642062 NA other downstream 1020269 57275053 ~ 57276777 (+)

Expression


Co-expression Network