LOC110498162 (LOC106560907)


Basic Information

Item Value
gene id LOC110498162
gene name LOC106560907
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 56850905 ~ 56862683 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574772.2
ccagttgcccatccctggtctaagTCAATATAGCTACTTTCCTAATTATGAGACAATCTCCGCGTTTCTATTGTAACAATTATTACAATATGTTAAATGTCTGTTTTTCATATAGATCGTTTACCTGCATCATATAGTTCCTCCATGCCGTTGAGGGGCGCATGTTCGTCATAAATAAACGCCATCGATAAACCCAGGAGCTCAGCCATGTTGAAGAAGTCTCAGCGCTGAGAGAGCTGCATCCCGCCATTGTGTAGATTATATGCTCTGTAGAGAGACAGGGACTCTTGACTAACTCTCAATATACATTTCATACACCCTGCCACTTAAAGAAATAACAAAAAATTCTAATACAAAAAAGGCTCCAGGGAGAAAGACATGTCAGCCAGCAGCCTTCTTGAACAGAGACCGAAAGGCCAAGGAAACAAAGTGCAAAACGGAGCTGTGACCCAAAAGGATACTTTGAATGATGATGAGTTTGAGCCTTACCTGAACCCTCAGGCCAGACAGAGCAATGCCTATACGGCCATGTCGGACTCCTACATGCCCAGTTACTACAGCCCATCCATAGGATTCTCTTACTCCTTGAACGAGGCAGCATGGTCCACCGGGGGAGATCCTCCCATGCCTTACCTGACCTCATATGGACAGCTGAGCAACGGGGAGCACCACTTCCTGCCTGACCCCATGTTCGGCCAGCCAGGCCCGCTGGGCAGCAACCCCTTCTTGGGCCAGCACAGTTTCAACTTCTTTCCCAGCAGTATGGACTTCTCTGCCTGGGGCAACAACAGCTCTCAGGGACAGTCTTCGCAGAACTCTGGCTACAGCAGTAGCTATGCCTACGCACCCAGCTCGCTAGGGGGTGCCATGATCGACGGACAGTCCCCCTTTGCCCAGAACGAGCCCCTCAACAAGGCACCTGGCATGAACAGCTTGGACCAGGGCATGGCTGGACTTAAGATTGGTGGCGGTGCAGGGGACATGGGGGCCCCAAAGGTGGTGGGCTCTGGCCTCCCCAGGGGATCCCTAGGCCACAGCCAGGTTTCTGGTGGAGCTCCCAGCATGCCACTGCCCCCCGTGTCCATCGCCCCCGCTAAGCCCGCCTCCTGGGCGGACATTGCCAGCAAGCCGGCCAAGCCGCAGCCCAAGCTGAAAACCAAGGGTGGCATAGCGGGGACCAACCTGCCCCCTCCGCCCATCAAACACAACATGGACATTGGCACTTGGGACAACAAGGGGACCATGCCTAAAGCGTCCACCCCCCAGCAGGCGCCGCTCCCCAGCAACGGGCAGCCGCCCAACCAGGCCTCACCTCAGCCCGGCACCATGGCCGGAGGGACCCCGCAACTGCCCCTCAGCAATGGACAGTTGGTGGCCTCTTCGGCCCAGCTGGGGCAGCACCAATTCCCCCCCAACGGGCAGCAGGGCATGGGGGGGCAGCTTCAGCTTTCCCAGGGCCCCCCGCCCACCACCCTGCCATCTCAGCCCACCCGCTGGGTCCCTCCACGGAACCGTGCCAACGGCTTTGGGGATGCCGTGGGTGGGGCGGGGCAGTCGCCCCCCAACTCGGGCGTGGGTGGGGTGCTGGTGCTCTCGGAGCCCCACCCGGTGCTGGAGAAGCTGCGCCTGGTCAACAACTACAACCCCAACGACTTTGACTGGAATCTCAAGCAGGGCCGTGTGTTCATCATCAAGAGCTACTCCGAGGACGACATCCACCGCTCCATCAAGTACAACATCTGGTGCAGCACGGAGCACGGCAACAAGCGGCTGGACGCCGCCTACCGCTCTCTGGGCGCCAAGGGCCCCCTCTACCTGCTCTTCAGCGTCAACGGCAGTGGCCACTTTTGTGGCGTGGCGGAGATGCGCTCGCCCGTGGACTACAACACCTGCGCCGGCGTGTGGTCGCAGGACAAGTGGAAGGGGCGTTTTGACGTGCGCTGGATCTTCGTTAAGGACGTTCCCAACAGCCAGCTACGGCACATCCGCCTGGAGAACAACGAGAATAAGCCAGTGACCAACTCGCGGGACACACAGGAGGTGCCTCTGGACAAGGCACGGCAGGTGCTGAAGATCATCGCCGGCTACAAGCACACCACCTCCATCTTTGACGACTTCTCCCACTACGAGAAGCGCcaagaggaggaggactgtgtgaAAAAGGTGGAGGTCCAGGGTAGCGAGCCGTACCCCAGTAACCCCAACCCCAGCAGGAGTCATTACAGACTTCAGGAACGCCAAGGACGTGTCAAGTAACAGTCACTGCTTTGGGCAAAAGACTGCAATGGCCCCTCTTTTCCCTTTCTACCCCCATCACATTCAGATATTTCAAGAAATTCTAAAATGGGGCAAAAAAAATTAACCAaggacacacaaaaaaaaaaaacgaaatgaAGACTTTCTTGATTTCTTTTTACTTTAAAAGACTGACTTTGAACCTGTAGTAAAATAAAAAGAAATTATTATTCATAGGACTAAAACTTTGATGCATAGCATCCTTAGGTGAATCTCCCCACCCCCCCATTCCACTACATATGCTTTTTTTTTCTTACTCCCCCCTGCCCCGCCTGTTTTTACAGTCTGAAAACAAGTCTGTAATTCTTCTCATGCAAAATAATAGTGGACATTTTTTTGGTGTCATCTACTACGGCTACTATTAGTGGACAGAAGTCCAGGCGGGTCATTATGTAAACCACCTCCTCCAGTGGGAGATTAAATCATCCAATCAGgacgcggggggggggggggtctcctcaGTGGATATTTGTTGTAGTGGGTCCTGTCATCAGTTCCTTCAAGAAGTTTCTTTTTCATATGCTTCCATCTGTTTATAAAAAAAGAACTAAAACAAATGATCGAGATGACCTTGTTTATTTTTTGTGTTGGGCAGAGTGTATGGGGGGCGGGGGTtaaggttggggggggggggggggggggtgaaagcaACAAGATTTGTTACGTTTAGCCTTGGTCATTGTATAATTTTATGTACAATTGTACAAAATTGGGCTGTTTGCAGACTTCAGAACTTATTTGCCCTTTTTTTCTTGGACTGGTTTATTAATGTTTTTATTGGCTGCTTCCCTCCTGCCATTTTTGTTTCCTCTTCCTCCCGTTTTCTTAAAGACCGCGCCGACGCGAGTGGCCTTGCCCCCCCATTCTTTCTATTGATCAGTTCGAAGTAATAAACGTTGTATACTCAGCAAGAACTCGTGTGCATTCCCCTTGTTTGACTGTAAACACTTTTCATGCTGTGTGCATCCCCTTTTCAGATTATTAGTTTTTATTAAgggtaaatgttttatttggtaAGGAAGCCATATTaccccaaacccccccccccccccccccccccccacacacacacacttaattctACCCCAAACATCCCTCTTTTACTACTAACCACTACTGTCTCTTTCCACTGCCTGCTCTACCATAACACCACCACCCTTGCAGAATGTCAATGTTGGTGAAAACACTACTGGCTTTTCTCtgtggtataataataataataaagtcaATCTTGC
>TU1877945
CAAGATTTGTTACGTTTAGCCTTGGTCATTGTATAATTTTATGTACAATTGTACAAAATTGGGCTGTTTGCAGACTTCAGAACTTATTTGCCCTTTTTTTCTTGGACTGGTTTATTAATGTTTTTATTGGCTGCTTCCCTCCTGCCATTTTTGTTTCCTCTTCCTCCCGTTTTCTTAAAGACCGCGCCGACGCGAGTGGCCTTGCCCCCCCATTCTTTCTATTGATCAGTTCGAAGTAATAAACGTTGTATACTCAGCAAGAACTCGTGTGCATTCCCCTTGTTTGACTGTAAACACTTTTCATGCTGTGTGCATCCCCTTTTCAGATTATTAGTTTTTATTAAgggtaaatgttttatttggtaAGGAAGCCATATTaccccaaacccccccccccccccccccccccccacacacacacacttaattctACCCCAAACATCCCTCTTTTACTACTAACCACTACTGTCTCTTTCCACTGCCTGCTCTACCATAACACCA
>TU1877946
CAAGATTTGTTACGTTTAGCCTTGGTCATTGTATAATTTTATGTACAATTGTACAAAATTGGGCTGTTTGCAGACTTCAGAACTTATTTGCCCTTTTTTTCTTGGACTGGTTTATTAATGTTTTTATTGGCTGCTTCCCTCCTGCCATTTTTGTTTCCTCTTCCTCCCGTTTTCTTAAAGACCGCGCCGACGCGAGTGGCCTTGCCCCCCCATTCTTTCTATTGATCAGTTCGAAGTAATAAACGTTGTATACTCAGCAAGAACTCGTGTGCATTCCCCTTGTTTGACTGTAAACACTTTTCATGCTGTGTGCATCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574772.2 False 3530 mRNA 0.52 6 56850905 56862683
TU1877945 False 501 lncRNA 0.43 1 56862100 56862600
TU1877946 True 317 lncRNA 0.41 1 56862100 56862416

Neighbor

gene id symbol gene type direction distance location
LOC110498155 LOC106561796 coding upstream 266227 56444523 ~ 56584678 (+)
LOC118941494 NA coding upstream 312276 56534070 ~ 56538629 (+)
LOC118941493 LOC106561950 coding upstream 418196 56114169 ~ 56432709 (+)
LOC118941492 LOC106612417 coding upstream 596121 56250613 ~ 56254784 (+)
LOC110498153 LOC106561476 coding upstream 918826 55927603 ~ 55932079 (+)
LOC110498163 LOC106610662 coding downstream 195851 57058534 ~ 57062178 (+)
LOC110498164 LOC106609486 coding downstream 212844 57075527 ~ 57080042 (+)
LOC110511273 LOC106609620 coding downstream 223610 57086293 ~ 57088604 (+)
LOC110517953 LOC106609620 coding downstream 226386 57089069 ~ 57096631 (+)
LOC118941495 LOC106609620 coding downstream 236758 57099441 ~ 57102342 (+)
G1641718 NA non-coding upstream 15287 56834989 ~ 56835618 (+)
G1641712 NA non-coding upstream 25963 56824111 ~ 56824942 (+)
G1641701 NA non-coding upstream 46496 56804066 ~ 56804409 (+)
G1641697 NA non-coding upstream 49764 56800834 ~ 56801141 (+)
G1641694 NA non-coding upstream 53585 56797054 ~ 56797320 (+)
G1641747 NA non-coding downstream 33215 56895898 ~ 56897188 (+)
G1641749 NA non-coding downstream 36194 56898877 ~ 56906795 (+)
G1641755 NA non-coding downstream 58299 56920982 ~ 56921219 (+)
G1641756 NA non-coding downstream 60137 56922820 ~ 56923311 (+)
G1641768 NA non-coding downstream 94530 56957213 ~ 56957483 (+)
G1641713 LOC106560842 other upstream 20596 56825952 ~ 56830309 (+)
G1641407 NA other upstream 339808 56509929 ~ 56511097 (+)
G1641405 NA other upstream 345008 56500157 ~ 56505897 (+)
LOC110498128 LOC106610688 other upstream 1881295 54968308 ~ 54969856 (+)
G1641935 NA other downstream 273143 57135826 ~ 57143925 (+)
G1642062 NA other downstream 412370 57275053 ~ 57276777 (+)
G1642565 NA other downstream 793666 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 1301794 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 1430653 58293310 ~ 58298259 (+)
G1641732 NA non-coding upstream 1454 56860205 ~ 56860646 (+)

Expression


Co-expression Network