LOC110498163 (LOC106610662)


Basic Information

Item Value
gene id LOC110498163
gene name LOC106610662
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57058534 ~ 57062178 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469781.2
GAGCGGCGCGTTGGAGCGGGTGAATGGATGACGTCGGGAGACTGGCGCCAGGCTGTCTGGGACGGGCGCGTTAGATCAACACAGCTGGGGTGGAATAGGACACACAGCTGGGCGAGGGTACATTCCTCCACAAAACACGATTGTGAGAAAAAGGAAAATAAGACCAAATAGGAACAGAGGGGACAcggtttgacaaaaaaaaaatgcaggAGTTAAAAAGAAAGAGAAGAATATGCAACTTATTTTGAGTTAGGGTTCATCCCGAATTGTATTCACAATAACATAACCGAATGTTGTTCTCCTCTGTCATGGTTAACTGCAGATTTCATATTTGTTTggatttcgtttttttttttatctttattttatttgacattaAAAAGAAAAAATAAGATGAATTGATAGTGGTATAGACAAAGTCCAGCTAGGCATATACAACAGAGTTTCTTATTTCTTATGATAATAATATGATTAGCTAATAATAACAAGTTCAAAACTGTTATTCACAATGAAGGGAGTTTGCACTTTCAAGAACTCATGTATGGCATTCAACTGTTTGGATAACTTATCTAGGCTTCTTGAATCTATTGCTAATGAAAATGACTGTTGTATCCCTATCCTCCTAGCCTACATCTTTTGGGTGAAGAAATGTGAAAACCATTACTTTTTATAAGGCTTATAATTACAGGATTTTCAAGCttatcttctctgtctgtctgcctgcctgccgctTGACAAGTCTTAAAATCATGTGATGCCAAAAGAGGTAGAAAAATGATTCCTGACGCCAGAATGTCTGCAACGTCATGAGAGGAACACGTTGGCGTGAAACCCGTAACGGTAACGTGTGGCTTCAATTTGATAAAGGAAGAAGATCCAGAGAGTCTATGTCAGTGAGCAAAACAGACATATTTACGTCTATTAACCAAGTTGAATGTTTCTTGTTGGATAGTTTATGTATTCAGTGCTCACCAAAATTATGTTTTCTTGATTGTAGCCTAATATCTGAAATGAGGTGGGTAATTGCCCATAGGATTGACTAGCATCATTGCTTGAATTTCTCATTCCATCTGCCCCCACCCCTACCTCGCCCCGGTAGGTGACGTTTGAACAGCCAATCATAAACCCCGAGCTTCTCAGAACAACCAGGAAGTCTCTACAGTGGCTAATCAGAGCACGAGGGTGTATTTATTTGTGAGAATGGGCGGCGACTGACTAACAAGGGTGTATAAAGCCATCCTCACACCCACACCGAAGTACTGTAGCTGGTTGTTGCCTTAGCGTCTCACTTTATTTCACATTGATTAACTAATTGTAGGCTACTTTAAAAACATGAAAGCCATCAGTCCTATGAGATCTGTCAGAAGCTGCTACGAAGCTGTCCGCTGCATTTCGGATCAGAGTCTCTCCATCACCCGGAATAAGCCATCTATGGAGGAATCCGTGGGCGCGCTGTGCGATATGAATGACTGCTACTCCAAACTGAAGGAGCTGGTACCGAGCATCCCACAGAACAAGTCCGTCAGCCAAGTGGAAATTCTGCAACACGTTATCGACTACATATTCGACCTACAAATCGCGTTGGAAGACGAGTCTTCAGCGACAACCACGCCTGATTTGGTGCTGTCACTAAAGAATGCAGACCTTGCACGCAATTTCTCCCAAGAAGATGGACGGTTGTGCCGTTAAAGAGGAGGAATAGGCCTATAACGTCCATAAATGGTGCAGAGAAACACATCTCCAATTCACTCTGGGCAAGAGGGCCAGAAAGAAGGTCTGGGATAGGTATTTAGAGTGGGAGAGAAGAGGACTCTTTAGTTCTCAGATCTGGGTAAGAGGGCCAGAAagaaggtctgggacaggtattTAGAGTGGGAGAGAAGAGGACTCTTTAGTTCTCAGATCTGGGCAAGAGGACAAGAGGGCAAGAAagaaggtctgggacaggtattTAGAGTGGGAGAGAAGAGGACTCTTTAGTTctcagatggatggatggatcacCCTCTTGTTTTCTGTTCTCTTGTCAGCAGAAGTGACATAAACAACACACACCAAAGCAGAAAAATATTTGAATTGACTctgtttctgtccctctccctgtctctctctctctctacttgttcCTCTCAGTTGTGGTTTTGTATCCCTCTGAATGTATCGATACATCAAGCTTTGTTGATTTATCTTTTTGTGTTACATTCCAAACCAAACCTTTTGGATTGACCTTCCAATATTTtgttacaaccccccccccaatccttcctcccttccctcctctcctagcCAGTCCTAAAACTCTATCACTTAattctctcttcatatcctctgTTATCTTATAATTTGAAGGTTTTCAGAACTTGGTCAAATTGTGTAAAGATCTAATTTGGTCACTGTGAACTCTGAAAGAGATGGGTTAAATGAGTTTGGTCTTGTGCGGGGGTCCTTGGATATAATCACAACTCTGTAATAGAGTtgattgtaaatgtttgtagggATTGTTTATTtctacggacaatgtcaaataaTTGCTGAGTTTTataaacttttttttcttttttaaaaatcaaaGTCTGGGTTGTATGTACGTTCTTATGTAATAAAATGAAGAAATGTCGTGAACGTTC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469781.2 True 2627 mRNA 0.41 3 57058534 57062178

Neighbor

gene id symbol gene type direction distance location
LOC110498162 LOC106560907 coding upstream 195851 56850905 ~ 56862683 (+)
LOC110498155 LOC106561796 coding upstream 473856 56444523 ~ 56584678 (+)
LOC118941494 NA coding upstream 519905 56534070 ~ 56538629 (+)
LOC118941493 LOC106561950 coding upstream 625825 56114169 ~ 56432709 (+)
LOC118941492 LOC106612417 coding upstream 803750 56250613 ~ 56254784 (+)
LOC110498164 LOC106609486 coding downstream 13349 57075527 ~ 57080042 (+)
LOC110511273 LOC106609620 coding downstream 24115 57086293 ~ 57088604 (+)
LOC110517953 LOC106609620 coding downstream 26891 57089069 ~ 57096631 (+)
LOC118941495 LOC106609620 coding downstream 37263 57099441 ~ 57102342 (+)
LOC118941496 LOC106609620 coding downstream 40794 57102972 ~ 57105777 (+)
G1641904 NA non-coding upstream 47615 57010330 ~ 57010919 (+)
G1641893 NA non-coding upstream 66401 56991885 ~ 56992133 (+)
G1641883 NA non-coding upstream 72124 56986189 ~ 56986410 (+)
G1641879 NA non-coding upstream 75240 56982843 ~ 56983294 (+)
G1641878 NA non-coding upstream 76123 56982208 ~ 56982411 (+)
LOC118941498 LOC106609620 non-coding downstream 7673 57069851 ~ 57167057 (+)
LOC110498166 LOC106609620 non-coding downstream 56532 57113265 ~ 57136895 (+)
G1641933 NA non-coding downstream 99101 57161279 ~ 57162259 (+)
LOC110498389 LOC106612499 non-coding downstream 133959 57176839 ~ 57196955 (+)
G1642100 NA non-coding downstream 210274 57272452 ~ 57272747 (+)
G1641713 LOC106560842 other upstream 228225 56825952 ~ 56830309 (+)
G1641407 NA other upstream 547437 56509929 ~ 56511097 (+)
G1641405 NA other upstream 552637 56500157 ~ 56505897 (+)
LOC110498153 LOC106561476 other upstream 1128239 55927603 ~ 55932079 (+)
LOC110498128 LOC106610688 other upstream 2088924 54968308 ~ 54969856 (+)
G1641935 NA other downstream 73648 57135826 ~ 57143925 (+)
G1642062 NA other downstream 212875 57275053 ~ 57276777 (+)
G1642565 NA other downstream 594171 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 1102299 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 1231158 58293310 ~ 58298259 (+)

Expression


Co-expression Network