LOC110498164 (LOC106609486)


Basic Information

Item Value
gene id LOC110498164
gene name LOC106609486
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57075527 ~ 57080042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021574774.2
CCCATTTACTTCCTGAAAGGCATACTACTTGTAGTTTACCACCACACGGTCTCATCGTTTCGACAGACAGGAAGTCAAACTTAATCCATCAATATTTAGAAATGAAAACTCTGTTTCTGCTACACATCTGTTGGCTGGAAATCATCACAGGAAACAGAGTGGAAACTTCAGTGGACCAGTATGGGTTGAAGGGGGATTCAATATGTCTGGCTGTTGCAGAACCTGAGATTCTCAAGGGACTTAAATGGAAGACGGGCAGTGATATAATAGTTGATGATGAAGAGATCTCTCCTAAATACAAGGAAAAGGTGGATTATAACTCTGTGAACCATTCTCTGTGTATAAAGAATCTGTTGAACACAGACAGTAGAATGTACATAATAAGTGCAATTAACCAGAGAGACTGGACATATTCAACTACCACATACAGACTAAAGGTGATGGATCATGTTCCCAAACCAGTCTTGGATGTCACATCTCTCTTCAACACAAATGTGGGACTCTGTGACGTCACAGTGAACTGTTCTGTTAAAGATGGCTGGATGTTGTCTGTCTGTGGCTGGGGACAGTGTACACTGTCACAACAGTTAATGTCTCTGTCTGAGGTCAACATCATCATCTCCAATGGGAACGGGACTATCCAATGCTCCAGCAGCAACTACGTCAGCACACAGACCATCTATCAACCCATGAAGGACTGTATTGGTGAGAAGGAAGCCAAAGCTTCAGCATTATCAGTCAGGACCATTGCGGCCAATATTGTTCGATCAGTGATTGTCTGTGTTGGATTGGCTGTCACCATAATGGCCATTAACAAGATCAGCAGATGGATATCCTCAAAAGAAGATGACTCAACTCAGGAAGTCATCGTTGAAGTCGCTGACACCACAGTGAATGTTTCAGCAGAGGTGAGGCCAGAACCACTGGGCCCTCCTGAGGTAAAAAAACACTTTACAGAAATGTGCAGAAACCAGGACAGCAACACTGAATGGACTACACCCAGACCAGCATTTTGTATGATAAGACTGTAATACCACGGGACAAATATTGAACACATTTAAATTAGTATTATCTGCAGTGTATATTTGCTTAAAGGGAGAGCCGTGTCGGGTCAACTTCCACAACAACTAAGAGCATTGAAGCATGAGGCTAAACTCTGCATGTTTTGATGTGAAGCACACCCTACACATGAACATATACTCTGCGAGTACAATGTCTTGCTCTGCGCTTATCTACAAATTCTGTGGTTCATTCTGCTGGTCGTGGCAACGTCATATCGCTATGTCTCAGTTTAACGCAACTAGTGTTTTGGAATATTGAATATCACACTTCGGTTGTGTTTTTGGAATGCTGAATGTCACATTTGTGTTTTTGGAATGGTGAATGTCAAACTTAAGTTCTTGTTTTTACCCCCAAAAATGAATAAATGATGAATTGAATCAATGAACTGAAATAAATGATTAATTGAACCATCACTGTTCAAATTCAATATTACACAGTCAATACAATGCCTTGTGGAATTGCTCCACATCCTGTCTAATTAAAAATAGTACCGGTTTCTGAACTTGACCTTGTGGTTAAGGCTGCTGCCTTGGTTTATGTAGATTTTCCCTGCCTGTGTTGGTACGAGTCCTGGCACCTACCGGACCTACTCTGTACCTCCTTCTCTCGGTCTCCCCTTCATTTTATATGTGTCTCTGTCATTGAAAAACATTAAAATACTTTCTGTAAAATACAGGAGAGTTGTAACggcattcttcctcctcttctgaggaggagcagcgagaaggatcggaggaccaatgcg

Function

NR:

description
uncharacterized protein LOC110498164 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021574774.2 True 1807 mRNA 0.42 5 57075527 57080042

Neighbor

gene id symbol gene type direction distance location
LOC110498163 LOC106610662 coding upstream 13349 57058534 ~ 57062178 (+)
LOC110498162 LOC106560907 coding upstream 212844 56850905 ~ 56862683 (+)
LOC110498155 LOC106561796 coding upstream 490849 56444523 ~ 56584678 (+)
LOC118941494 NA coding upstream 536898 56534070 ~ 56538629 (+)
LOC118941493 LOC106561950 coding upstream 642818 56114169 ~ 56432709 (+)
LOC110511273 LOC106609620 coding downstream 6251 57086293 ~ 57088604 (+)
LOC110517953 LOC106609620 coding downstream 9027 57089069 ~ 57096631 (+)
LOC118941495 LOC106609620 coding downstream 19399 57099441 ~ 57102342 (+)
LOC118941496 LOC106609620 coding downstream 22930 57102972 ~ 57105777 (+)
LOC110498166 LOC106609620 coding downstream 33223 57113265 ~ 57136895 (+)
G1641904 NA non-coding upstream 64608 57010330 ~ 57010919 (+)
G1641893 NA non-coding upstream 83394 56991885 ~ 56992133 (+)
G1641883 NA non-coding upstream 89117 56986189 ~ 56986410 (+)
G1641879 NA non-coding upstream 92233 56982843 ~ 56983294 (+)
G1641878 NA non-coding upstream 93116 56982208 ~ 56982411 (+)
G1641933 NA non-coding downstream 81237 57161279 ~ 57162259 (+)
LOC110498389 LOC106612499 non-coding downstream 116095 57176839 ~ 57196955 (+)
G1642100 NA non-coding downstream 192410 57272452 ~ 57272747 (+)
G1642060 NA non-coding downstream 197285 57277327 ~ 57278371 (+)
G1641713 LOC106560842 other upstream 245218 56825952 ~ 56830309 (+)
G1641407 NA other upstream 564430 56509929 ~ 56511097 (+)
G1641405 NA other upstream 569630 56500157 ~ 56505897 (+)
LOC110498153 LOC106561476 other upstream 1145232 55927603 ~ 55932079 (+)
LOC110498128 LOC106610688 other upstream 2105917 54968308 ~ 54969856 (+)
G1641935 NA other downstream 55784 57135826 ~ 57143925 (+)
G1642062 NA other downstream 195011 57275053 ~ 57276777 (+)
G1642565 NA other downstream 576307 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 1084435 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 1213294 58293310 ~ 58298259 (+)

Expression


Co-expression Network