LOC110511273 (LOC106609620)


Basic Information

Item Value
gene id LOC110511273
gene name LOC106609620
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57086293 ~ 57088604 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005037776.1
aCCCACAAGGCTACTTGCCTCTCCTGAAACCACCTACTTTGGCCGAGAACCAATCAACAGAATCAGGGCAGAACCTTCAGTGGACCAGCATGGGTTGAAGGGGGGTTCAATATGTCTGGTTGTTCCAGAACCTCCTGAGATGATCAAAGGACTTCAATGGAGGAAGGACAGTGATGTAATATTTGGAGACAAAGAGATCTCTCCTAAATACAAGGATAAGGTGGACTATAACAATGATAACCATTCTCTGTGTATTAAGAATCTAATGGAAACTGACAGTGGAATTTACATGGTAAACTACAGGAAACATTGGAAACAATCAACTACTACATATAGACTGTTAGTGGAGGATCATGTTCCCAAACCAGTCATGGATGTCACATCTCTCAACACAAGTGTGGGACTCTGTGATGTCACAGTGAACTGTTCAGTTAAAGATGGCTggatgttgtctgtctgtgacaGCGGTCAGTGTACACTGTCACAACAGTCTCCGTCACTAACCGGTGGTAACATGACCATCTCCGTATTGACTGGAAGGATCCAATGCACCAGCAGCAACCACGTCAGCACACAGACCATCTCTCAACCCATGGAGGACTGTAGTGGTAATGTGAAAGCCTCAGTGTTACCAGTTGGCACCATTGTGGGCTGTGTTACTGGTATATTACTCCTAGTTGCTGTGTTACTTGGTGTTGGATACATCAAACATACCAGAAGACAGAAAATCCCTAAAGAACAAAGTCCACTAGAAGAGGTCATTGTTCCAAGAGTTTACAACTCAGTGAAGACCTCACCAGGGAGAGAAGAACCACAGCATCTCCTTACCAGAACCACAGCCCTGTCCTGACCAGAACCACAGCACTCTCCTGTCCAGAACCACATCACTCTCCTGTCCAGAAccacatatatatacatttttatattccaTTTCATGGAAGTTTCTTTATCCATGAAATGAAGTGGGTGGAGAACAAACCCCTCTTCACATTGTTACAGATAGAATTGAACCATTATTTTGAAATGATCAGTAAAAGTGGAAATACAAAAAAGCAATATGTATCATAAAATGTTTTGACAAACTGAAAATGTATCTTGACATGTAGTACCCGTCTGTTAGTTCTTCTCACTGGTGGATTTGGTGGTATCCTGTATAGCTTCCTGCATTTACTCCCAGCAAGCACAAAACCCTTCATAGAGTTGGTccatactgactgtctctgtcatttTGAGGGAAAACACCTGCTCCAGATCAGTGAAGGAGAGGTTTTGTTGCATGTTTATCCATATTTCGTTGATATGCCAAACCGAGAGAACAACAACAGAAATTACTTTGCAGGAATTGGCGTGTTTACTGTGATTTGATGAATATACGGGACAAGGGAGGTCCCGTATGGGACAAACCAATTTAGCCCAATATAAGAGCCATCCCGGCTAATACGGGACAGTTGCCAACCCTATTTGACGTTTTCAAATTAAACTCTCATTTAACGTg

Function

NR:

description
uncharacterized protein LOC110517953

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005037776.1 True 1495 mRNA 0.43 5 57086293 57088604

Neighbor

gene id symbol gene type direction distance location
LOC110498164 LOC106609486 coding upstream 6251 57075527 ~ 57080042 (+)
LOC110498163 LOC106610662 coding upstream 24115 57058534 ~ 57062178 (+)
LOC110498162 LOC106560907 coding upstream 223610 56850905 ~ 56862683 (+)
LOC110498155 LOC106561796 coding upstream 501615 56444523 ~ 56584678 (+)
LOC118941494 NA coding upstream 547664 56534070 ~ 56538629 (+)
LOC110517953 LOC106609620 coding downstream 465 57089069 ~ 57096631 (+)
LOC118941495 LOC106609620 coding downstream 10837 57099441 ~ 57102342 (+)
LOC118941496 LOC106609620 coding downstream 14368 57102972 ~ 57105777 (+)
LOC110498166 LOC106609620 coding downstream 24661 57113265 ~ 57136895 (+)
LOC118936466 LOC106609620 coding downstream 52906 57141510 ~ 57144118 (+)
G1641904 NA non-coding upstream 75374 57010330 ~ 57010919 (+)
G1641893 NA non-coding upstream 94160 56991885 ~ 56992133 (+)
G1641883 NA non-coding upstream 99883 56986189 ~ 56986410 (+)
G1641879 NA non-coding upstream 102999 56982843 ~ 56983294 (+)
G1641878 NA non-coding upstream 103882 56982208 ~ 56982411 (+)
G1641933 NA non-coding downstream 72675 57161279 ~ 57162259 (+)
LOC110498389 LOC106612499 non-coding downstream 107533 57176839 ~ 57196955 (+)
G1642100 NA non-coding downstream 183848 57272452 ~ 57272747 (+)
G1642060 NA non-coding downstream 188723 57277327 ~ 57278371 (+)
G1641713 LOC106560842 other upstream 255984 56825952 ~ 56830309 (+)
G1641407 NA other upstream 575196 56509929 ~ 56511097 (+)
G1641405 NA other upstream 580396 56500157 ~ 56505897 (+)
LOC110498153 LOC106561476 other upstream 1155998 55927603 ~ 55932079 (+)
LOC110498128 LOC106610688 other upstream 2116683 54968308 ~ 54969856 (+)
G1641935 NA other downstream 47222 57135826 ~ 57143925 (+)
G1642062 NA other downstream 186449 57275053 ~ 57276777 (+)
G1642565 NA other downstream 567745 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 1075873 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 1204732 58293310 ~ 58298259 (+)

Expression


Co-expression Network