LOC118941495 (LOC106609620)


Basic Information

Item Value
gene id LOC118941495
gene name LOC106609620
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57099441 ~ 57102342 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955130.1
TatttttagtttagttttatACATTTACATCCCGCACTGAATGTAAACCAGGGCGGAAATCAGTTCCGGCGGCTTCGCGCATGCGCGATTCATTTTCAGTCTGGAcgcggaggggtgaacatctcctctGACTGCTGCGAGAGGACTGGGCCGCatgtgagtgctttgggacggtgtggggcccacggcagcacccgctgctcgttgagaagagtaagaacgatacgtgctttcacgtcagtctccaataacaccagaaaaagtcgcTAGATTTGTCGCTAGTCGCTTTTTTGAAAAAGTCtcgctagaggggtctgaatactcgctaaatatagcgacaaagtcgctaagttggcaacactgcccaCATTAGCTAAACATGAATATACTATAACCACATTTCATATGCGTGTATTACTAGCACAGATGTAAACATAATCAGATAAGAGAGATCGGTTCCCAATTTAGCCTTAACATTAAGGTCTAACGTTAACTTACACAGcgacaactgccttgttcaggggcagaacgacagatgtttaccttgtcagcccgggGATTTGATGTCGTTTACCGGCCCAACGCTGTAACCCACAAGGCTACTTGCCTCTCCTGAAACCACCTACTTTGGCCGAGAACCAATCAACAGAATCAGGGCAGAACCTTCAGTGGACCAGCATGGGTTGAAGGGGGGTTCAATATGTCTGGTTGTTCCAGAACCTCCTGAGATGATCAAAGGACTTCAATGGAGGAAGGACAGTGATGTAATATTTGGAGACAAAGAGATCTCTCCTAAATACAAGGATAAGGTGGACTATAACAATGATAACCATTCTCTGTGTATTAAGAATCTAATGGAAACTGACAGTGGAATTTACATGGTAAACTACAGGAAACATTGGAAACAATCAACTACTACATATAGACTGTTAGTGGAGGATCATGTTCCCAAACCAGTCATGGATGTCACATCTCTCAACACAAGTGTGGGACTCTGTGATGTCACAGTGAACTGTTCAGTTAAAGATGGCTggatgttgtctgtctgtgacaGCGGTCAGTGTACACTGTCACAACAGTCTCCGTCACTAACCGGTGGTAACATGACCATCTCCGTATTGACTGGAAGGATCCAATGCACCAGCAGCAACCACGTCAGCACACAGACCATCTCTCAACCCATGGAGGACTGTAGTGGTAATGTGAAAGCCTCAGTGTTACCAGTTGGCACCATTGTGGGCTGTGTTACTGGTATATTACTCCTAGTTGCTGTGTTACTTGGTGTTGGATACATCAAACATACCAGAAGACAGAAAATCCCTAAAGAACAAAGTCCACTAGAAGAGGTCATTGTTCCAAGAGTTTACAACTCAGTGAAGACCTCACCAGGGAGAGAAGAACCACAGCATCTCCTTACCAGAACCACAGCCCTGTCCTGACCAGAACCACAGCACTCTCCTGTCCAGAACCACATCACTCTCCTGTCCAGAAccacatatatatacatttttatattccaTTTCATGGAAGTTTCTTTATCCATGAAATGAAGTGGGTGGAGAACAAACCCCTCTTCACATTGTTACAGATAGAATTGAACCATTATTTTGAAATGATCAGTAAAAGTGGAAATACAAAAAAGCAATATGTATCATAAAATGTTTTGACAAACTGAAAATGTATCTTGACATGTAGTACCCGTCTGTTAGTTCTTCTCACTGGTGGATTTGGTGGTATCCTGTATAGCTTCCTGCATTTACTCCCAGCAAGCACAAAACCCTTCATAGAGTTGGTccatactgactgtctctgtcatttTGAGGGAAAACACCTGCTCCAGATCAGTGAAGGAGAGGTTTTGTTGCATGTTTATCCATATTTCGTTGATATGCCAAACCGAGAGAACAACAACAGAAATTACTTTGCAGGAATTGGCGTGTTTACTGTGATTTGATGAATATACGGGACAAGGGAGGTCCCGTATGGGACAAACCAATTTAGCCCAATATAAGAGCCATCCCGGCTAATACGGGACAGTTGGCAACCCTATTTGACGTTTTCAAATTAAACTCTCATTTAACGTgtgaaa

Function

NR:

description
uncharacterized protein LOC110517953

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955130.1 True 2089 mRNA 0.44 5 57099441 57102342

Neighbor

gene id symbol gene type direction distance location
LOC110517953 LOC106609620 coding upstream 2810 57089069 ~ 57096631 (+)
LOC110511273 LOC106609620 coding upstream 10837 57086293 ~ 57088604 (+)
LOC110498164 LOC106609486 coding upstream 19399 57075527 ~ 57080042 (+)
LOC110498163 LOC106610662 coding upstream 37263 57058534 ~ 57062178 (+)
LOC110498162 LOC106560907 coding upstream 236758 56850905 ~ 56862683 (+)
LOC118941496 LOC106609620 coding downstream 630 57102972 ~ 57105777 (+)
LOC110498166 LOC106609620 coding downstream 10923 57113265 ~ 57136895 (+)
LOC118936466 LOC106609620 coding downstream 39168 57141510 ~ 57144118 (+)
LOC118941498 LOC106609620 coding downstream 61431 57069851 ~ 57167057 (+)
LOC110498389 LOC106612499 coding downstream 74497 57176839 ~ 57196955 (+)
G1641904 NA non-coding upstream 88522 57010330 ~ 57010919 (+)
G1641893 NA non-coding upstream 107308 56991885 ~ 56992133 (+)
G1641883 NA non-coding upstream 113031 56986189 ~ 56986410 (+)
G1641879 NA non-coding upstream 116147 56982843 ~ 56983294 (+)
G1641878 NA non-coding upstream 117030 56982208 ~ 56982411 (+)
G1641933 NA non-coding downstream 58937 57161279 ~ 57162259 (+)
G1642100 NA non-coding downstream 170110 57272452 ~ 57272747 (+)
G1642060 NA non-coding downstream 174985 57277327 ~ 57278371 (+)
G1641713 LOC106560842 other upstream 269132 56825952 ~ 56830309 (+)
G1641407 NA other upstream 588344 56509929 ~ 56511097 (+)
G1641405 NA other upstream 593544 56500157 ~ 56505897 (+)
LOC110498153 LOC106561476 other upstream 1169146 55927603 ~ 55932079 (+)
LOC110498128 LOC106610688 other upstream 2129831 54968308 ~ 54969856 (+)
G1641935 NA other downstream 33484 57135826 ~ 57143925 (+)
G1642062 NA other downstream 172711 57275053 ~ 57276777 (+)
G1642565 NA other downstream 554007 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 1062135 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 1190994 58293310 ~ 58298259 (+)

Expression


Co-expression Network